View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5872_high_3 (Length: 378)
Name: NF5872_high_3
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5872_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 360
Target Start/End: Original strand, 23552162 - 23552513
Alignment:
| Q |
9 |
gagatgaactacatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtgttgatgatgtgagacttcagtttcaggatggaga |
108 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| |
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| T |
23552162 |
gagaggaaccacatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtgttgatgatgagagacttgagttttaggatggaga |
23552261 |
T |
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| Q |
109 |
ccttgttgtattctctgaagttcatggtatgaaagagttgaatgacagaaagccaagaaagattaaaaatgctagagcatattcattcactcttgaagaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23552262 |
ccttgttgtattctctgaagttcatggtatgaaagagttgaatgaccgaaagccaagaaagattaaaaatgctacagcatattcattcactcttgaagaa |
23552361 |
T |
|
| Q |
209 |
gacaccacaaactatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccacaggttttgaacttcaaacctgtaagggaagcactcaatg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23552362 |
gacaccacaaactatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccacaggttttgaacttcaaacctctaagggaagcactcaatg |
23552461 |
T |
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| Q |
309 |
atccaggtgaatttcttcttagcgatctttctaagtttgaccgctcacctct |
360 |
Q |
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| T |
23552462 |
atccaggcaaatttcttcttagcgatttttctaagtttgaccgcccacctct |
23552513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 30834438 - 30834087
Alignment:
| Q |
9 |
gagatgaactacatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtgttgatgatgtgagacttcagtttcaggatggaga |
108 |
Q |
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|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| |
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| T |
30834438 |
gagaggaaccacatactggaataattgcgtccattagcaatgacaaccctgctctagtttcttgtgttgatgatgagagacttgagtttcaggatggaga |
30834339 |
T |
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| Q |
109 |
ccttgttgtattctctgaagttcatggtatgaaagagttgaatgacagaaagccaagaaagattaaaaatgctagagcatattcattcactcttgaagaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30834338 |
ccttgttgtattctctgaagttcatggtatgaaagagttgaatgacggaaagccaagaaagattaaaaatgctagagcatattcattcactcttgaagaa |
30834239 |
T |
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| Q |
209 |
gacaccacaaactatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccacaggttttgaacttcaaacctgtaagggaagcactcaatg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30834238 |
gacaccacaaactatggtgcctatgaaaaaggtggtattgtcacacagtccaaacaaccacaggttttgaacttcaaacctctaagggaagcactcaatg |
30834139 |
T |
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| Q |
309 |
atccaggtgaatttcttcttagcgatctttctaagtttgaccgctcacctct |
360 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
30834138 |
atccaggcgaatttcttcttagcgatttttctaagtttgaccgcccacctct |
30834087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 360
Target Start/End: Complemental strand, 30815422 - 30815076
Alignment:
| Q |
14 |
gaactacatactggaataattgcgtccatcagcaatgacaaccctgctctagttacttgtgttgatgatgtgagacttcagtttcaggatggagaccttg |
113 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |||||||||| |||||||||| |
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| T |
30815422 |
gaaccacatactggaataattgcatccatcagcaatgacaaccctgctgtagtatcttgtgttgatgatgagagacttgagtttcaggacggagaccttg |
30815323 |
T |
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| Q |
114 |
ttgtattctctgaagttcatggtatgaaagagttgaatgacagaaagccaagaaagattaaaaatgctagagcatattcattcactcttgaagaagacac |
213 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30815322 |
ttgtgttctctgaagttcatggtatgaaagagttgaatgacggaaagccaagaaagattaaaaatgctagagcatattcattcactcttgaagaagacac |
30815223 |
T |
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| Q |
214 |
cacaaactatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccacaggttttgaacttcaaacctgtaagggaagcactcaatgatcca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30815222 |
cacaaactatggtgcctatgaaaaaggtggtattgtcacacaggccaaacaaccaaaggttttgaacttcaaacctctaagggaagcactcaatgatcca |
30815123 |
T |
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| Q |
314 |
ggtgaatttcttcttagcgatctttctaagtttgaccgctcacctct |
360 |
Q |
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|| |||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
30815122 |
ggcgaatttcttcttagcgatttttctaagtttgaccgcccacctct |
30815076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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