View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5872_high_8 (Length: 250)
Name: NF5872_high_8
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5872_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 215937 - 216176
Alignment:
| Q |
1 |
cggtaatggtccttataacttccattttgtgcttctgtgtaaaatgtaatttgnnnnnnnatggtttactataatcatttagcttagttacaacacttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
215937 |
cggtaatggtccttataacttccattttgtgcttctgtgtaaaatgtaatttgtttttttatggtttactacaatcatttagcttaggtacaacacttga |
216036 |
T |
|
| Q |
101 |
attcttgcgctagtacttttttgataagcatattttcttcaattttaattgatggcacagtcatgattaagctatgttgctaatagtgccgtgatcgcgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
216037 |
attcttgcgctagtacttttttgataagcatattttcttcaattttaattgatggcacagtcatgattaagctatgttgctaatagtgccatgatcgcgc |
216136 |
T |
|
| Q |
201 |
actatagcagtttaacggagcagttttagggtcttctgtg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
216137 |
actatagcagtttaacggagcagttttagggtcttctgtg |
216176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University