View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5872_low_1 (Length: 483)
Name: NF5872_low_1
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5872_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 40418893 - 40418430
Alignment:
| Q |
1 |
aaggattaacatcatagtgcatctttgtcataaaaggaaaaaactgcaatatgcacctccttcaacagcagttccatgtgtctgcatattaggtttgtgg |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| |
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| T |
40418893 |
aaggattaacatcatagtgcatctttttcataaaaggaaaaaactgcaatatgcacctccttcaacaacagttccacatgtctacatattaggtttgtgg |
40418794 |
T |
|
| Q |
101 |
acgtctgtggccaacttttaccttacatggctcaaactgcaacacgattacgagctacttcaacgcactagaacctcttcacaatgatgcgtctgaagta |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40418793 |
acgtctgtggccaacttttaccctacatggctcaaactgcaatacgattacgaactacttcaacgcactagaacctcttcacaatgatgcgtctgaagta |
40418694 |
T |
|
| Q |
201 |
tttcgatagtaataggcctgcaagacaaacaataacccaaaccaaagctttaacgactcatgcagcatccgaacacacgtaatagagaaatccatctatc |
300 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40418693 |
tttcgatagtaaaaggcctgcaagataaacaataacccaaaccaaagctacaacaactcatgcagcatccgaacacacgtaatagagaaacccatctatc |
40418594 |
T |
|
| Q |
301 |
atcatattaaatacaatgatgacgatagatggtatcatgtttccccgattgagatatgatattataacataaacaacaacaaaagtagtattcaaaatta |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40418593 |
atcatattaaatacaatgatgacgacagatggtatcatgtttccccgattgagatatgatattacaacataaacaacaacaaaagtagtattcaaaatta |
40418494 |
T |
|
| Q |
401 |
tcaaaaagtagataaaaagctctcctgctggtgtggttgcaatggttctcttcaaactatcagc |
464 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40418493 |
tcaaaaagtagataaaaaactctccagctggtgtggttgcaatggttctcttcaaactatcagc |
40418430 |
T |
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