View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5872_low_12 (Length: 227)
Name: NF5872_low_12
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5872_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 51483206 - 51483041
Alignment:
| Q |
19 |
cttctgatattaatacctcttatttcacccacttgttttgtgcatttgctgaccttgatactgctaccaaccaagtcaccatttctcctgcaaacgcagc |
118 |
Q |
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| T |
51483206 |
cttctgatattgatccctcttatttcacccacttgttttgtgcatttgctgaccttgatactgctaccaaccaagtcaccatttctcctgcaaacgcagc |
51483107 |
T |
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| Q |
119 |
aagattctcaaccttcacccaaactgttcaggcaaaaagtagttcagtgaaaacccttctatcaat |
184 |
Q |
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| T |
51483106 |
aagattctcaaccttcacccaaactgttcaggcaaaaagtagttcagtgaaaacccttctatcaat |
51483041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 51457984 - 51457821
Alignment:
| Q |
20 |
ttctgatattaatacctcttatttcacccacttgttttgtgcatttgctgaccttgatactgctaccaaccaagtcaccatttctcctgcaaacgcagca |
119 |
Q |
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| T |
51457984 |
ttctgacattgatccctcttatttcacccacttgttttgtgcatttgcagaccttgattctaataccaaccaagtcaccatttcttctgcaatcgcagct |
51457885 |
T |
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| Q |
120 |
agattctcaaccttcacccaaactgttcaggcaaaaagtagttcagtgaaaacccttctatcaa |
183 |
Q |
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| T |
51457884 |
agtttctcaaccttcactgaaaccattcaggcaaagagtcgttcagtgaaaacccttttatcaa |
51457821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 51468298 - 51468134
Alignment:
| Q |
20 |
ttctgatattaatacctcttatttcacccacttgttttgtgcatttgctgaccttgatactgctaccaaccaagtcaccatttctcctgcaaacgcagca |
119 |
Q |
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| T |
51468298 |
ttctgacattgatccctcttatttcacccacttgttctgtgcatttgctgaccttgattctaataccaaccaagtcaccatttcttctacacacgcagct |
51468199 |
T |
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| Q |
120 |
agattctcaaccttcacccaaactgttcaggcaaaaagtagttcagtgaaaacccttctatcaat |
184 |
Q |
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|| |||||||||||||| |||| ||||| |||| |||| ||| ||||| || ||| ||||||| |
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| T |
51468198 |
agtttctcaaccttcactgaaaccattcagtcaaagagtaattcggtgaagacgcttttatcaat |
51468134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 48424711 - 48424547
Alignment:
| Q |
20 |
ttctgatattaatacctcttatttcacccacttgttttgtgcatttgctgaccttgatactgctaccaaccaagtcaccatttctcctgcaaacgcagca |
119 |
Q |
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|||||| ||| || ||||||||||||| |||||||| ||||||||||||||||||||| || ||||||||||||||| |||||| ||||||||||||| |
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| T |
48424711 |
ttctgacattgatccctcttatttcacacacttgttctgtgcatttgctgaccttgattctaataccaaccaagtcactatttcttctgcaaacgcagct |
48424612 |
T |
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| Q |
120 |
agattctcaaccttcacccaaactgttcaggcaaaaagtagttcagtgaaaacccttctatcaat |
184 |
Q |
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|| |||||||||||||| |||| | |||||||| |||||||| |||||||| ||| ||||||| |
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| T |
48424611 |
agtttctcaaccttcactgaaacaatccaggcaaagagtagttcggtgaaaactcttttatcaat |
48424547 |
T |
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