View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5872_low_13 (Length: 227)

Name: NF5872_low_13
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5872_low_13
NF5872_low_13
[»] chr3 (8 HSPs)
chr3 (1-224)||(36002465-36002688)
chr3 (44-179)||(36023603-36023737)
chr3 (69-179)||(23351901-23352011)
chr3 (69-174)||(23439874-23439979)
chr3 (69-180)||(23386234-23386345)
chr3 (69-180)||(23404608-23404719)
chr3 (69-174)||(23472409-23472514)
chr3 (116-180)||(23463239-23463303)
[»] chr4 (1 HSPs)
chr4 (119-180)||(12896971-12897032)
[»] chr2 (2 HSPs)
chr2 (44-180)||(16121612-16121747)
chr2 (44-180)||(16337421-16337556)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36002688 - 36002465
Alignment:
Q  1 catatatttgattatgaaatatgtatggcaacattggctaatataattattattttaaaatttgttattcagggaactgaagttgtggaagttatatttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||    
T  36002688 catatatttgattatgaaatatgtatggcaacattggctaatataattattattttaaattttgtttttcagggaactgaagttgttgaagttatatttt 36002589  T
Q  101 tcgatatttgtgactttggggatctatacttgagctctgcttcctttaaaagcatgaccaacttaagatatcttcatatccttaatagttgacataatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36002588 tcgatatttgtgactttggggatctatacttgagctctgcttcatttaaaagcatgaccaacttaagatatcttcatatccttaatagtttacataatat 36002489  T
Q  201 atttctgacaaatggaagaaatga 224  Q
    ||||||||||||||||||||||||    
T  36002488 atttctgacaaatggaagaaatga 36002465  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 36023737 - 36023603
Alignment:
Q  44 taattattattttaaaatttgttattcagggaactgaagttgtggaagttatatttttcgatatttgtgactttggggatctatacttgagctctgcttc 143  Q
    ||||||||||| |||| |||||| || ||||||| |||||||| ||||| ||  | ||||| ||||  ||  || | ||||||||||||| ||||| |||    
T  36023737 taattattattctaaa-tttgttttttagggaaccgaagttgttgaagtcatcatattcgacatttcagaaattagagatctatacttgacctctgattc 36023639  T
Q  144 ctttaaaagcatgaccaacttaagatatcttcatat 179  Q
    |||||||||||||||||||||||||| |||||||||    
T  36023638 ctttaaaagcatgaccaacttaagatgtcttcatat 36023603  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 179
Target Start/End: Complemental strand, 23352011 - 23351901
Alignment:
Q  69 tcagggaactgaagttgtggaagttatatttttcgatatttgtgactttggggatctatacttgagctctgcttcctttaaaagcatgaccaacttaaga 168  Q
    ||||||||||||||||||||||| |||| | ||||||| |   ||  ||||||||||||||||||  |||| |||||||||||| ||||| |||||||||    
T  23352011 tcagggaactgaagttgtggaaggtataatattcgatagtacagaagttggggatctatacttgaagtctgattcctttaaaaggatgacaaacttaaga 23351912  T
Q  169 tatcttcatat 179  Q
    |||||| ||||    
T  23351911 tatcttgatat 23351901  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 23439979 - 23439874
Alignment:
Q  69 tcagggaactgaagttgtggaagttatatttttcgatatttgtgactttggggatctatacttgagctctgcttcctttaaaagcatgaccaacttaaga 168  Q
    ||||||||||||||||||||||| |||| | ||||||| |   ||  ||||||||||||||||||  |||| |||||||| ||| ||| | |||||||||    
T  23439979 tcagggaactgaagttgtggaaggtataatattcgatactacggaagttggggatctatacttgaagtctgattcctttagaaggatggcaaacttaaga 23439880  T
Q  169 tatctt 174  Q
    ||||||    
T  23439879 tatctt 23439874  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 23386345 - 23386234
Alignment:
Q  69 tcagggaactgaagttgtggaagttatatttttcgatatttgtgactttggggatctatacttgagctctgcttcctttaaaagcatgaccaacttaaga 168  Q
    ||||||||||||||||||||||| |||| | || |||| |   ||  ||||||||||||||||||  |||| |||||||| ||| ||||| || ||||||    
T  23386345 tcagggaactgaagttgtggaaggtataatattggatagtacggaagttggggatctatacttgaagtctgattcctttagaaggatgacaaatttaaga 23386246  T
Q  169 tatcttcatatc 180  Q
    |||||| |||||    
T  23386245 tatcttaatatc 23386234  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 23404719 - 23404608
Alignment:
Q  69 tcagggaactgaagttgtggaagttatatttttcgatatttgtgactttggggatctatacttgagctctgcttcctttaaaagcatgaccaacttaaga 168  Q
    ||||||||||||||||||||||| |||| | ||||||| |   ||  |||||||| | |||||||  |||| |||||||| ||| ||||| |||||||||    
T  23404719 tcagggaactgaagttgtggaaggtataatattcgatagtacggatgttggggatatttacttgaagtctgattcctttagaaggatgacaaacttaaga 23404620  T
Q  169 tatcttcatatc 180  Q
    |||||| |||||    
T  23404619 tatcttaatatc 23404608  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 23472514 - 23472409
Alignment:
Q  69 tcagggaactgaagttgtggaagttatatttttcgatatttgtgactttggggatctatacttgagctctgcttcctttaaaagcatgaccaacttaaga 168  Q
    |||||||||| |||||| ||||| |||| | ||||||| |   ||  ||||||||||||||||||  |||| |||||||| ||| ||||| |||||||||    
T  23472514 tcagggaactaaagttggggaaggtataatattcgatagtacggaagttggggatctatacttgaagtctgattcctttagaaggatgacaaacttaaga 23472415  T
Q  169 tatctt 174  Q
    ||||||    
T  23472414 tatctt 23472409  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 23463303 - 23463239
Alignment:
Q  116 ttggggatctatacttgagctctgcttcctttaaaagcatgaccaacttaagatatcttcatatc 180  Q
    |||||||| | |||||||  |||| |||||||| ||| ||||| || ||||||||||||||||||    
T  23463303 ttggggatatttacttgaagtctgattcctttagaaggatgacaaatttaagatatcttcatatc 23463239  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 12896971 - 12897032
Alignment:
Q  119 gggatctatacttgagctctgcttcctttaaaagcatgaccaacttaagatatcttcatatc 180  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  12896971 gggatctatacttgagctctgattcatttaaaaacatgaccaacttaagatatcttcatatc 12897032  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 16121747 - 16121612
Alignment:
Q  44 taattattattttaaaatttgttattcagggaactgaagttgtggaagttatatttttcgatatttgtgactttggggatctatacttgagctctgcttc 143  Q
    |||||||||||  ||| |||||| ||||||||||||| | ||| ||||||||| | || |||| || | |  |||| ||| |||||||||||||    ||    
T  16121747 taattattattcaaaattttgtt-ttcagggaactgatgctgttgaagttatactatttgatacttctaaaattggtgatgtatacttgagctccagatc 16121649  T
Q  144 ctttaaaagcatgaccaacttaagatatcttcatatc 180  Q
    |||| | ||||||| |||||||||||  |||||||||    
T  16121648 ctttgagagcatgatcaacttaagattacttcatatc 16121612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 16337421 - 16337556
Alignment:
Q  44 taattattattttaaaatttgttattcagggaactgaagttgtggaagttatatttttcgatatttgtgactttggggatctatacttgagctctgcttc 143  Q
    |||||||||||  ||| |||||| ||||||||||||| | ||| ||||||||| | || |||| || | |  |||| ||| |||||||||||||    ||    
T  16337421 taattattattcaaaattttgtt-ttcagggaactgatgctgttgaagttatactatttgatacttctaaaattggtgatgtatacttgagctccagatc 16337519  T
Q  144 ctttaaaagcatgaccaacttaagatatcttcatatc 180  Q
    |||| | ||||||| |||||||||||  |||||||||    
T  16337520 ctttgagagcatgatcaacttaagattacttcatatc 16337556  T

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