View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5872_low_4 (Length: 360)
Name: NF5872_low_4
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5872_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 52627105 - 52627363
Alignment:
| Q |
1 |
ttgtataaaatgtaactgagatgtgtgtggtgttggaatcaaaa-gggagaacaaataatataaaagtaaaaaactatatatacaccagttttgtcattg |
99 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52627105 |
ttgtataaaacgtaactgagatgtgtgtggtgttggaatcaaaaagggagaacaaataatataaaagtaaaaaactatatatacaccagttttgtcattg |
52627204 |
T |
|
| Q |
100 |
gatcacttcaaaaaccaacaatcggtatattnnnnnnntattgctttgnnnnnnnnaacaaccatcacatatatatgatagtttaaactaagattgatat |
199 |
Q |
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| T |
52627205 |
gatcacttcaaaaaccaacaatcggtatattaaaaaaatattgctttgttttttttaacaaccatcac----atatgatagtttaaaccaaaatcgatat |
52627300 |
T |
|
| Q |
200 |
tataagttttcaaccatgaaattgaatgtaacttacctttatcaaacatatgctgaattatat |
262 |
Q |
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||||||||||||||||| ||| |||| ||||||| |||||||||||||||| |||||||||| |
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| T |
52627301 |
tataagttttcaaccatcaaagtgaaagtaacttgactttatcaaacatatggtgaattatat |
52627363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 52631459 - 52631523
Alignment:
| Q |
263 |
attttccttagctttgaaaactatgtcattccttcattccacataactcaaacacaacataaacc |
327 |
Q |
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| T |
52631459 |
attttccttagctttgaaaactatgtcattccttcattccacataactcaaacacaacataaacc |
52631523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 324
Target Start/End: Complemental strand, 24838587 - 24838436
Alignment:
| Q |
172 |
atatgatagtttaaactaagattgatattataagttttcaaccatgaaattgaatgtaacttacctttatcaaacatatgctgaattatatattttcctt |
271 |
Q |
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| T |
24838587 |
atatgagagtttaacccaagattgacattataagctttcaaccaccaaaatgaatgtaatttgactttatctaacatctgatgaattgtgt--tttcctt |
24838490 |
T |
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| Q |
272 |
agctttgaaaactatgtcattcct-tcattccacataactcaaacacaacataa |
324 |
Q |
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| T |
24838489 |
agccttaaaaactctatttttcctctcattccacataacccaaacacaacataa |
24838436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 324
Target Start/End: Original strand, 18186768 - 18186919
Alignment:
| Q |
172 |
atatgatagtttaaactaagattgatattataagttttcaaccatgaaattgaatgtaacttacctttatcaaacatatgctgaattatatattttcctt |
271 |
Q |
| |
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|||||| ||||||||| |||||||| |||||||| ||||||||| ||| |||||||||||| ||||||| ||||| || ||||| | | |||||||| |
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| T |
18186768 |
atatgagagtttaaaccaagattgagattataagctttcaaccaccaaaatgaatgtaacttgactttatcgaacatctggtgaat--tgtgttttcctt |
18186865 |
T |
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| Q |
272 |
agctttgaaaactatgtcattcc-ttcattccacataactcaaacacaacataa |
324 |
Q |
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||| |||||| || | | ||||| ||||||||||||||||||||||||||||| |
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|
| T |
18186866 |
agccttgaaacctctattattccgctcattccacataactcaaacacaacataa |
18186919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 324
Target Start/End: Original strand, 15142955 - 15143106
Alignment:
| Q |
172 |
atatgatagtttaaactaagattgatattataagttttcaaccatgaaattgaatgtaacttacctttatcaaacatatgctgaattatatattttcctt |
271 |
Q |
| |
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|||||| ||||||||| |||||||| |||||||| ||| ||||| ||| |||||||||||| ||||||| ||||| | ||||| | | ||||||| |
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| T |
15142955 |
atatgagagtttaaaccaagattgacattataagcttttaaccaccaaaatgaatgtaacttgactttatctaacatctcgtgaat--tgtggtttcctt |
15143052 |
T |
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| Q |
272 |
agctttgaaaactatgtcattcc-ttcattccacataactcaaacacaacataa |
324 |
Q |
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|| ||||||||| ||| ||||| || |||||||||||||||||||||||||| |
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| T |
15143053 |
ggccttgaaaactctgttattccgctccttccacataactcaaacacaacataa |
15143106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 28350268 - 28350205
Alignment:
| Q |
170 |
atatatgatagtttaaactaagattgatattataagttttcaaccatgaaattgaatgtaactt |
233 |
Q |
| |
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|||||||| ||||||||| || ||||| ||||||||||||||||||| ||| |||||||||||| |
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| T |
28350268 |
atatatgagagtttaaaccaaaattgacattataagttttcaaccatcaaaatgaatgtaactt |
28350205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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