View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5872_low_5 (Length: 322)
Name: NF5872_low_5
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5872_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 32876751 - 32876953
Alignment:
| Q |
1 |
ccatgttttaagtctgttagaatcggtttctgactgacgccaaaatgcagttttcttgcagtgatttatattaataaattttggttaaatacctataaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32876751 |
ccatgttttaagtctgttagaatcggtttctgactgacgccgaaatgcagttttcttgcagtgatttatattaataaattttggttaaatacctataaat |
32876850 |
T |
|
| Q |
101 |
cttccgatcttannnnnnnnnnnaaagaatcaaactttcgagtactatgttttttggtgaatactttcgagaacta-tttttgtttaaagaacttttgag |
199 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| |
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| T |
32876851 |
cttccgatctttttttttttttaaaagaatcaaactttcgagtactatgttttttggtgaatactttcgagaactattttttttttaaagtacttttgag |
32876950 |
T |
|
| Q |
200 |
aac |
202 |
Q |
| |
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||| |
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|
| T |
32876951 |
aac |
32876953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 32887319 - 32887510
Alignment:
| Q |
1 |
ccatgttttaagtctgttagaatcggtttctgactgacgccaaaatgcagttttcttgcagtgatttatattaataaattttggttaaatacctataaat |
100 |
Q |
| |
|
|||||||| |||| ||||||| | |||| |||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||| |
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| T |
32887319 |
ccatgtttcaagtttgttagagtaagtttttgaccgacgccaaaatgcagttttcttatagtgatttatatcaataaattttggttaaatatgtattaat |
32887418 |
T |
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| Q |
101 |
cttccgatcttannnnnnnnnnnaaagaatcaaactttcgagtactatgttttttggtgaatactttcgagaacta-tttttgtttaaagaactt |
194 |
Q |
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|||| |||| | ||||||||||||||| |||| |||| |||||||||||||||||| |||||||| ||||| |||||||||||| |
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| T |
32887419 |
cttctgatcct---tttttttttaaagaatcaaactttggagtgctatattttttggtgaatacttttgagaactattttttttttaaagaactt |
32887510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 558362 - 558318
Alignment:
| Q |
25 |
ggtttctgactgacgccaaaatgcagttttcttgcagtgatttat |
69 |
Q |
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||||||||||||| ||||||||||| |||||||| ||||| |||| |
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| T |
558362 |
ggtttctgactgatgccaaaatgcaattttcttgtagtgagttat |
558318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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