View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5872_low_6 (Length: 302)
Name: NF5872_low_6
Description: NF5872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5872_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 30583183 - 30583459
Alignment:
| Q |
19 |
gatccttcaatcaaattgcacaaggatactattctatcaaatcacactcatgga-aacttgttgaacaagtaactgttataacttataaccgaattagcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30583183 |
gatccttcaatcaaattgcacaaggattctattctatcaaatcacactcatggataacttgttgaacaagtaactgttataacttataaccgaattagcc |
30583282 |
T |
|
| Q |
118 |
taaccatcggagttagtaagagctttcccgtcatttctaactaactagctaactaactaagagctttctcatattgctctatgattcctctatatgaatt |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30583283 |
taaccatcggagttagcaagagctttcccgtcatttctaactaactagctaactaactaagagctttctcatattgctctatgattcctctatatgaatt |
30583382 |
T |
|
| Q |
218 |
ctatctatctcaacacagacaaaaaggaaaataaccgaaaagaaagagtatataactaaaattttgtccagatctgt |
294 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30583383 |
ctatctatctcaacatagacaaaaaggaaaataactgaaaagaaagagtatataactaaaattttgtccagatctgt |
30583459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University