View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5873-Insertion-1 (Length: 889)

Name: NF5873-Insertion-1
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5873-Insertion-1
NF5873-Insertion-1
[»] chr5 (30 HSPs)
chr5 (8-889)||(4634759-4635649)
chr5 (364-889)||(22488344-22488873)
chr5 (362-886)||(24411998-24412512)
chr5 (362-886)||(30445333-30445847)
chr5 (362-886)||(30454705-30455219)
chr5 (362-886)||(30459763-30460277)
chr5 (362-886)||(18568207-18568722)
chr5 (362-859)||(24421458-24421931)
chr5 (360-859)||(24278842-24279350)
chr5 (360-859)||(24382864-24383372)
chr5 (362-551)||(22158423-22158610)
chr5 (363-551)||(22129272-22129459)
chr5 (85-156)||(11978964-11979035)
chr5 (262-359)||(20252649-20252746)
chr5 (83-148)||(17697388-17697453)
chr5 (66-148)||(17947136-17947218)
chr5 (83-148)||(41768184-41768249)
chr5 (83-148)||(43463677-43463742)
chr5 (66-117)||(20427495-20427546)
chr5 (65-139)||(27529693-27529767)
chr5 (67-148)||(6023639-6023720)
chr5 (368-417)||(13581818-13581867)
chr5 (368-417)||(13588557-13588606)
chr5 (368-417)||(13589450-13589499)
chr5 (83-124)||(21823892-21823933)
chr5 (73-148)||(21273105-21273181)
chr5 (380-428)||(35728940-35728988)
chr5 (281-336)||(27529457-27529512)
chr5 (280-358)||(9195624-9195702)
chr5 (87-156)||(478947-479016)
[»] scaffold0233 (1 HSPs)
scaffold0233 (362-859)||(26638-27138)
[»] chr2 (30 HSPs)
chr2 (362-889)||(31710966-31711487)
chr2 (360-889)||(24023242-24023775)
chr2 (374-889)||(14272213-14272743)
chr2 (29-156)||(45702531-45702658)
chr2 (82-156)||(33036310-33036384)
chr2 (29-156)||(45469506-45469633)
chr2 (62-148)||(13139141-13139227)
chr2 (262-358)||(3251197-3251293)
chr2 (86-148)||(355173-355235)
chr2 (68-146)||(26403641-26403719)
chr2 (83-124)||(17007502-17007543)
chr2 (83-124)||(17065051-17065092)
chr2 (83-156)||(37326526-37326599)
chr2 (83-148)||(40903455-40903520)
chr2 (73-148)||(5663998-5664073)
chr2 (66-146)||(1841966-1842046)
chr2 (66-158)||(3251401-3251493)
chr2 (83-119)||(16936843-16936879)
chr2 (65-146)||(22870367-22870448)
chr2 (289-361)||(10235939-10236011)
chr2 (82-138)||(39529773-39529829)
chr2 (68-148)||(42051547-42051627)
chr2 (62-117)||(13353145-13353200)
chr2 (280-359)||(45702324-45702403)
chr2 (50-117)||(45717975-45718042)
chr2 (374-424)||(27421450-27421500)
chr2 (98-147)||(23479782-23479831)
chr2 (52-117)||(26245804-26245869)
chr2 (83-156)||(27270331-27270404)
chr2 (173-218)||(27336009-27336054)
[»] chr7 (26 HSPs)
chr7 (362-889)||(15172471-15173006)
chr7 (362-889)||(15201897-15202432)
chr7 (362-889)||(4118925-4119449)
chr7 (362-886)||(7592171-7592690)
chr7 (361-563)||(7590189-7590390)
chr7 (66-156)||(7288130-7288220)
chr7 (82-156)||(6457744-6457818)
chr7 (89-156)||(9601531-9601598)
chr7 (89-156)||(9829102-9829169)
chr7 (66-148)||(27292881-27292963)
chr7 (66-148)||(44232496-44232578)
chr7 (281-358)||(3942628-3942705)
chr7 (66-148)||(641565-641647)
chr7 (65-139)||(3942851-3942925)
chr7 (86-148)||(48778895-48778957)
chr7 (83-156)||(17195273-17195346)
chr7 (87-156)||(38430411-38430480)
chr7 (82-154)||(12463671-12463743)
chr7 (367-417)||(2206849-2206899)
chr7 (68-154)||(20367887-20367973)
chr7 (83-124)||(8751135-8751176)
chr7 (89-154)||(13063094-13063159)
chr7 (60-148)||(19322881-19322969)
chr7 (283-359)||(38431865-38431941)
chr7 (577-606)||(7590393-7590422)
chr7 (215-352)||(21416637-21416774)
[»] chr4 (43 HSPs)
chr4 (362-889)||(37058240-37058774)
chr4 (362-889)||(15843398-15843932)
chr4 (356-886)||(3242791-3243310)
chr4 (362-886)||(54690417-54690932)
chr4 (362-886)||(54699848-54700363)
chr4 (362-886)||(3917236-3917750)
chr4 (362-886)||(26811680-26812192)
chr4 (362-886)||(26821147-26821659)
chr4 (362-504)||(39128573-39128714)
chr4 (168-358)||(18870796-18870986)
chr4 (26-156)||(18871014-18871144)
chr4 (66-156)||(22196285-22196375)
chr4 (50-156)||(51071967-51072073)
chr4 (85-156)||(17188635-17188706)
chr4 (283-358)||(28067079-28067154)
chr4 (68-155)||(17402514-17402601)
chr4 (94-156)||(39867006-39867068)
chr4 (73-156)||(37871997-37872080)
chr4 (172-219)||(53100353-53100400)
chr4 (66-148)||(5320244-5320326)
chr4 (368-406)||(23443847-23443885)
chr4 (83-156)||(36653033-36653106)
chr4 (50-138)||(10040061-10040149)
chr4 (65-117)||(17535999-17536051)
chr4 (62-150)||(22741263-22741351)
chr4 (371-407)||(23621971-23622007)
chr4 (68-156)||(53481511-53481599)
chr4 (280-359)||(17188429-17188508)
chr4 (89-156)||(32320763-32320830)
chr4 (62-155)||(6355192-6355285)
chr4 (83-148)||(12727096-12727161)
chr4 (29-138)||(46610679-46610788)
chr4 (84-156)||(9897847-9897919)
chr4 (368-412)||(17239022-17239066)
chr4 (83-135)||(28066875-28066927)
chr4 (62-113)||(16698705-16698756)
chr4 (280-359)||(39867195-39867274)
chr4 (368-406)||(16491047-16491085)
chr4 (66-148)||(23805169-23805251)
chr4 (92-137)||(10358395-10358440)
chr4 (83-144)||(19498958-19499019)
chr4 (83-156)||(39061007-39061080)
chr4 (83-148)||(48639407-48639472)
[»] scaffold0040 (2 HSPs)
scaffold0040 (362-886)||(31311-31832)
scaffold0040 (361-859)||(9189-9700)
[»] chr6 (18 HSPs)
chr6 (362-886)||(18419722-18420236)
chr6 (362-889)||(23896117-23896628)
chr6 (368-437)||(12172458-12172527)
chr6 (66-154)||(12334891-12334979)
chr6 (75-156)||(15171432-15171513)
chr6 (75-156)||(15180204-15180285)
chr6 (65-156)||(15161427-15161518)
chr6 (75-156)||(15471900-15471981)
chr6 (90-156)||(12608225-12608291)
chr6 (83-148)||(2855468-2855533)
chr6 (83-156)||(12913599-12913672)
chr6 (83-124)||(16478977-16479018)
chr6 (83-148)||(17738949-17739014)
chr6 (83-124)||(18488383-18488424)
chr6 (66-114)||(3298057-3298105)
chr6 (87-117)||(6345468-6345498)
chr6 (100-158)||(32186465-32186523)
chr6 (67-116)||(10748055-10748104)
[»] chr3 (33 HSPs)
chr3 (362-886)||(28352225-28352739)
chr3 (362-886)||(28368157-28368671)
chr3 (362-886)||(28375975-28376489)
chr3 (362-886)||(28383797-28384311)
chr3 (360-889)||(38529638-38530163)
chr3 (362-481)||(24814515-24814629)
chr3 (173-358)||(7581554-7581739)
chr3 (82-156)||(14091490-14091564)
chr3 (630-859)||(4951018-4951250)
chr3 (362-445)||(27168318-27168401)
chr3 (59-331)||(20356672-20356944)
chr3 (66-148)||(12214158-12214240)
chr3 (173-303)||(28624371-28624501)
chr3 (83-148)||(53504511-53504576)
chr3 (172-219)||(462758-462805)
chr3 (65-155)||(30827844-30827934)
chr3 (44-117)||(1231467-1231540)
chr3 (226-306)||(34830023-34830103)
chr3 (213-305)||(55367241-55367332)
chr3 (29-148)||(15243986-15244105)
chr3 (66-117)||(25049774-25049825)
chr3 (66-117)||(29807458-29807509)
chr3 (66-156)||(19566184-19566274)
chr3 (278-335)||(20115489-20115546)
chr3 (87-148)||(32517874-32517935)
chr3 (68-148)||(298768-298848)
chr3 (265-353)||(30188373-30188461)
chr3 (371-403)||(54623281-54623313)
chr3 (60-150)||(462647-462737)
chr3 (368-406)||(32876778-32876816)
chr3 (86-148)||(39051039-39051101)
chr3 (83-148)||(15028763-15028828)
chr3 (83-148)||(42830021-42830086)
[»] scaffold0001 (1 HSPs)
scaffold0001 (362-859)||(412469-412952)
[»] scaffold0028 (2 HSPs)
scaffold0028 (362-886)||(94935-95450)
scaffold0028 (362-886)||(104376-104891)
[»] chr8 (27 HSPs)
chr8 (361-886)||(7789582-7790094)
chr8 (362-558)||(20709831-20710027)
chr8 (50-156)||(1010748-1010854)
chr8 (362-470)||(15833168-15833275)
chr8 (83-156)||(15014285-15014358)
chr8 (66-155)||(29977998-29978087)
chr8 (82-147)||(39920663-39920728)
chr8 (83-156)||(8445597-8445670)
chr8 (87-148)||(25720044-25720105)
chr8 (83-147)||(8305968-8306032)
chr8 (20-117)||(25320634-25320731)
chr8 (62-117)||(13447662-13447717)
chr8 (41-148)||(31462190-31462297)
chr8 (83-117)||(24425564-24425598)
chr8 (62-148)||(25108945-25109031)
chr8 (66-148)||(42451906-42451988)
chr8 (83-148)||(21312453-21312518)
chr8 (242-335)||(36025122-36025215)
chr8 (65-117)||(1682168-1682220)
chr8 (50-138)||(3774829-3774917)
chr8 (62-114)||(5252608-5252660)
chr8 (92-148)||(9741510-9741566)
chr8 (89-136)||(23448173-23448220)
chr8 (280-358)||(15014070-15014148)
chr8 (289-350)||(442380-442441)
chr8 (175-220)||(16683020-16683065)
chr8 (100-153)||(23942874-23942927)
[»] scaffold0482 (2 HSPs)
scaffold0482 (362-886)||(2706-3217)
scaffold0482 (361-500)||(1819-1955)
[»] chr1 (21 HSPs)
chr1 (409-859)||(15810514-15810973)
chr1 (66-156)||(36983970-36984060)
chr1 (60-156)||(50817219-50817315)
chr1 (66-156)||(15174552-15174642)
chr1 (362-520)||(41001268-41001425)
chr1 (62-150)||(43914142-43914230)
chr1 (280-358)||(43913925-43914003)
chr1 (362-410)||(15811268-15811316)
chr1 (66-148)||(33569652-33569734)
chr1 (83-156)||(34548044-34548117)
chr1 (83-156)||(48241173-48241246)
chr1 (68-156)||(42910071-42910159)
chr1 (371-406)||(25880968-25881003)
chr1 (289-359)||(3856273-3856343)
chr1 (74-148)||(32303968-32304042)
chr1 (173-306)||(751449-751582)
chr1 (262-358)||(42910234-42910330)
chr1 (173-220)||(17540265-17540312)
chr1 (71-114)||(31912940-31912983)
chr1 (86-148)||(14206184-14206246)
chr1 (262-327)||(20987764-20987829)
[»] scaffold0309 (1 HSPs)
scaffold0309 (66-154)||(551-639)
[»] scaffold0155 (2 HSPs)
scaffold0155 (83-156)||(32949-33022)
scaffold0155 (262-359)||(32742-32839)
[»] scaffold0533 (2 HSPs)
scaffold0533 (75-156)||(725-806)
scaffold0533 (173-358)||(522-706)
[»] scaffold0693 (1 HSPs)
scaffold0693 (68-156)||(285-373)
[»] scaffold0247 (1 HSPs)
scaffold0247 (371-406)||(23562-23597)
[»] scaffold0015 (1 HSPs)
scaffold0015 (65-156)||(5973-6064)
[»] scaffold0021 (1 HSPs)
scaffold0021 (368-406)||(176416-176454)
[»] scaffold0300 (1 HSPs)
scaffold0300 (83-156)||(8204-8277)
[»] scaffold0153 (1 HSPs)
scaffold0153 (83-124)||(23609-23650)
[»] scaffold0101 (1 HSPs)
scaffold0101 (368-406)||(43086-43124)
[»] scaffold0281 (1 HSPs)
scaffold0281 (359-406)||(23137-23186)


Alignment Details
Target: chr5 (Bit Score: 677; Significance: 0; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 8 - 889
Target Start/End: Original strand, 4634759 - 4635649
Alignment:
Q  8 actcgattgacgtcttgaaacaataaattcctgtccttcggaggtcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttcct 107  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||| |||||||||||||||    
T  4634759 actcgattgacatcttgaaataataaattcctgtcctttggaggtcgtctcatacttttgaaatttgtcatgtcatctattccgatttactttctttcct 4634858  T
Q  108 tcttcaaggcacctacatatataatttcttccattgaatctttatttaagagannnnnnnggg---atgtgaggattttaggaaaattgcttgggtcgac 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||   |||||||||||||||||||||| |||||||||||    
T  4634859 tcttcaaggcacctacatatataatttcttccattgaatctttatttaagagatttttttggggggatgtgaggattttaggaaaattccttgggtcgac 4634958  T
Q  205 tgggactctatttgttcaccaaaggtgtatggagggctgggggcgaggaagctgcgtgaatttaatattgcgtttttagggaattggtgttggaggatgt 304  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  4634959 tgagactctatttgttcaccaaaggtgtatggagggctgggggcgaggaagctgcgcgaatttaatattgcgtttttagggaagtggtgttggaggatgt 4635058  T
Q  305 tgttagataagggagggttatggtatcgagtccttaaggctaggtacggggaggttgtgttgagacaaaatccttatttgatgttttaaagattacaaac 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4635059 tgttagataagggagggttatggtatcgagtccttaaggctaggtacggggaggttgtgttgagacaaaatccttatttgatgttttaaagattacaaac 4635158  T
Q  405 atattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttcatgagaatgaactgagaacgttctggcaaaaacgatgaaaatg 504  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4635159 atattacatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttcatgagaatgaattgagaacgttctggcaaaaacgatgaaaatg 4635258  T
Q  505 aaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgttttaataaatgtctattgggccataagaaaagctttaagccca 604  Q
     || |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4635259 gaacagtacatcaaaagtgaacaagtctgcacagcaagaaaacatggctgattatgttttaataaatgtctattgggccataagaaaagctttaagccca 4635358  T
Q  605 tttggaaaagaaagcccattaatatctcatggttaagatcacatgacttatttaagcatgatatcactaaagcaaaaggacatgacatcatcagcagtgg 704  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     
T  4635359 tttggaaaagaaagcccattaatatctcatggataagatcacatgacttatttaagcatgacatcactaaagcaaaaggacatgacatcatcagcagtgc 4635458  T
Q  705 gcaacaagttatacagctcattacagctggttctctcacgcgcaagcaagcaacagtgttttcaaagccaagcaaatcagaaagaacattatgag-acgt 803  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |||| || |    
T  4635459 gcaacaagttatacaactcattacaactggttctctcacgcgcaagcaagcaatagtgctttcaaagccaggcaaatcagaaagaacattttgagaacat 4635558  T
Q  804 tctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc-aaaacgcgtc--acagctccattttctcccttgatc 889  Q
    ||| |||||||| |||||| ||||| |||||||||||||||||||||||||||| ||||||| ||  ||||||| ||||||||||||||||    
T  4635559 tctagctattttaaagaagaaaagaaaaatcaattgagactttggacaactatcaaaaacgcatccaacagctctattttctcccttgatc 4635649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 364 - 889
Target Start/End: Original strand, 22488344 - 22488873
Alignment:
Q  364 ttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttcat 463  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  22488344 ttgagacaaaattcttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgttttg-tgagaatttgtttcat 22488442  T
Q  464 gagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgttt 563  Q
    ||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  22488443 gagaatgaactgagaacgttctggcaaaaactatgaaaatggaacagtacatcaaaagtgaacaagtctgcacagcaagaaagcatggctgattatgttt 22488542  T
Q  564 taataaatgtctattgggccataagaaaagctttaagcccatttggaaaagaaagcccattaatatctcatggttaagatcacatgacttatttaagcat 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||| | |||||||||| |||||||||||||    
T  22488543 taataaatgtctattgggccataagaaaagctttaagcccatttggaaaagtaagcccattaatcactcatggat-agatcacatggcttatttaagcat 22488641  T
Q  664 gatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagcaagcaacagtgt 763  Q
    || |||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||| ||||| | |||||||||||||||||     
T  22488642 gacatcactaaagcaaaaggacatgacatcatcagcattaggcagcaagttatacagctcattacagctggttatctcatgtgcaagcaagcaacagtgc 22488741  T
Q  764 tttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc-aaaa 859  Q
    ||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||    
T  22488742 tttcaaagccaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaaaaa 22488841  T
Q  860 cgcgtc--acagctccattttctcccttgatc 889  Q
    || |||  ||||||| ||||||||||||||||    
T  22488842 cgtgtccaacagctctattttctcccttgatc 22488873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 362 - 886
Target Start/End: Original strand, 24411998 - 24412512
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  24411998 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 24412097  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||| ||| |||||        
T  24412098 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcttggctgatt---- 24412193  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  24412194 --------atgtctattgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 24412279  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  24412280 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaaca 24412379  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  24412380 gtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 24412479  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  24412480 aaaacgtgtccaacagctctattttctcccttg 24412512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 362 - 886
Target Start/End: Complemental strand, 30445847 - 30445333
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  30445847 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 30445748  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||| | || ||||||||||||| |||||||| |||||||||||||||| ||| |||||        
T  30445747 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaaaggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcttggctgatt---- 30445652  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  30445651 --------atgtctattgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 30445566  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  30445565 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaaca 30445466  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggcta-ttttaagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||||||| || ||||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||| |||||     
T  30445465 gtgctttcaaagtcaggcaaatcagaaagaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatca 30445366  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  30445365 aaaacgtgtccaacagctctattttctcccttg 30445333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 362 - 886
Target Start/End: Complemental strand, 30455219 - 30454705
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  30455219 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 30455120  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||| | || ||||||||||||| |||||||| |||||||||||||||| ||| |||||        
T  30455119 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaaaggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcttggctgatt---- 30455024  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  30455023 --------atgtctattgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 30454938  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  30454937 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaaca 30454838  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggcta-ttttaagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||||||| || ||||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||| |||||     
T  30454837 gtgctttcaaagtcaggcaaatcagaaagaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatca 30454738  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  30454737 aaaacgtgtccaacagctctattttctcccttg 30454705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 362 - 886
Target Start/End: Complemental strand, 30460277 - 30459763
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  30460277 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 30460178  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||| | || ||||||||||||| |||||||| |||||||||||||||| ||| |||||        
T  30460177 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaaaggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcttggctgatt---- 30460082  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  30460081 --------atgtctattgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 30459996  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  30459995 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaaca 30459896  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggcta-ttttaagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||||||| || ||||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||| |||||     
T  30459895 gtgctttcaaagtcaggcaaatcagaaagaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatca 30459796  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  30459795 aaaacgtgtccaacagctctattttctcccttg 30459763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 362 - 886
Target Start/End: Original strand, 18568207 - 18568722
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  18568207 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 18568306  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| ||| |||||||||||| ||| |||||||||    
T  18568307 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgctcagcaagaaagcttggctgattatgt 18568406  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttgg-aaaagaaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    ||             ||||||||||||||||||||||||||||||||| |||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  18568407 tt-----------acttgggccataagaaaagctttaagcccatttggaaaaataaagcccattaa------atggataagatcacatggcttacttaag 18568489  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||| |  ||||||| |||||||||||||||||||| ||||| |||||||| ||||||||    
T  18568490 catgacatcactagagcaaaaggacatgacatcatcagaagtggactgcaagttacacagctcattacagctggttatctcatgcgcaagcaaagcaaca 18568589  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggcta-ttttaagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||||||| || ||||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||||||| |||||||||||||| |||||     
T  18568590 gtgctttcaaagtcaggcaaatcagaaagaacattctgagaacgttctggctatttttaagaagaaaagagaaatcaaatgagactttggacagctatca 18568689  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  18568690 aaaacgtgtccaacagctctattttctcccttg 18568722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 362 - 859
Target Start/End: Original strand, 24421458 - 24421931
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  24421458 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 24421557  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||| ||| |||||        
T  24421558 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcttggctgatt---- 24421653  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  24421654 --------atgtctattgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 24421739  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  24421740 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaaca 24421839  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgagacgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatcaa 857  Q
    ||| |||| ||| || |||||||||||||||||          ||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||    
T  24421840 gtgctttctaagtcaggcaaatcagaaagaaca----------ttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatcaa 24421929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 360 - 859
Target Start/End: Complemental strand, 24279350 - 24278842
Alignment:
Q  360 tgtgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtt 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||  |||| ||||||||||||    
T  24279350 tgtgttgagacaaaatccttatttgatgttttaaagattacaaacatgttatatttatttaatcttgttatctactaattc-attttgtgagaatttgtt 24279252  T
Q  460 tcatgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattat 559  Q
    ||||||||||| |||||||||||| ||||| | | || |||| ||||| |||||||||||  | || |||| |||||| |  | |||||||| |||| ||    
T  24279251 tcatgagaatgtactgagaacgttttggcatatatgaagaaattgaaacagtacatcaaagataaataagtctgcacaacgtgtaagcatggctgataat 24279152  T
Q  560 gttttaataaatgtctattgggccataagaaaagctttaagcccatttggaa-aagaaagcccatt--------aatatctcatggttaagatcacatga 650  Q
     |||||| |||||||| ||||| ||||||||||| ||| | |||||||||||     |||||||||        |||| |||||||  |||| |||||      
T  24279151 attttaagaaatgtctcttgggacataagaaaagatttcaacccatttggaagctttaagcccattagaaataaaataactcatggaaaagagcacatag 24279052  T
Q  651 cttatttaagcatgatatcactaaagcaaaaggac-atgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaa 749  Q
     ||||| | |||||| ||||||||||| ||||||| ||||||| || |||| ||||||||||| || |||| |||||||| ||||| |||||| || |||    
T  24279051 tttattaaggcatgacatcactaaagc-aaaggacaatgacat-attagcattgggcaacaag-taaacagttcattacaactggtactctcatgcacaa 24278955  T
Q  750 gcaagcaacagtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt--aagaagaa-agagaaatcaattgagactttg 845  Q
    |||||||||| ||    |||||  | |||||||||| | |||||| |||| ||||||||||||||||  |||||||| ||||||||||| ||||| ||||    
T  24278954 gcaagcaacaatgcaagcaaagttaggcaaatcagacacaacatt-tgagaacgttctggctatttttaaagaagaagagagaaatcaactgagattttg 24278856  T
Q  846 gacaactatcaaaa 859  Q
    |||| |||||||||    
T  24278855 gacagctatcaaaa 24278842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 360 - 859
Target Start/End: Original strand, 24382864 - 24383372
Alignment:
Q  360 tgtgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtt 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||  |||| ||||||||||||    
T  24382864 tgtgttgagacaaaatccttatttgatgttttaaagattacaaacatgttatatttatttaatcttgttatctactaattc-attttgtgagaatttgtt 24382962  T
Q  460 tcatgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattat 559  Q
    ||||||||||| |||||||||||| ||||| | | || |||| ||||| |||||||||||  | || |||| |||||| |  | |||||||| |||| ||    
T  24382963 tcatgagaatgtactgagaacgttttggcatatatgaagaaattgaaacagtacatcaaagataaataagtctgcacaacgtgtaagcatggctgataat 24383062  T
Q  560 gttttaataaatgtctattgggccataagaaaagctttaagcccatttggaa-aagaaagcccatt--------aatatctcatggttaagatcacatga 650  Q
     |||||| |||||||| ||||| ||||||||||| ||| | |||||||||||     |||||||||        |||| |||||||  |||| |||||      
T  24383063 attttaagaaatgtctcttgggacataagaaaagatttcaacccatttggaagctttaagcccattagaaataaaataactcatggaaaagagcacatag 24383162  T
Q  651 cttatttaagcatgatatcactaaagcaaaaggac-atgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaa 749  Q
     ||||| | |||||| ||||||||||| ||||||| ||||||| || |||| ||||||||||| || |||| |||||||| ||||| |||||| || |||    
T  24383163 tttattaaggcatgacatcactaaagc-aaaggacaatgacat-attagcattgggcaacaag-taaacagttcattacaactggtactctcatgcacaa 24383259  T
Q  750 gcaagcaacagtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt--aagaagaa-agagaaatcaattgagactttg 845  Q
    |||||||||| ||    |||||  | |||||||||| | |||||| |||| ||||||||||||||||  |||||||| ||||||||||| ||||| ||||    
T  24383260 gcaagcaacaatgcaagcaaagttaggcaaatcagacacaacatt-tgagaacgttctggctatttttaaagaagaagagagaaatcaactgagattttg 24383358  T
Q  846 gacaactatcaaaa 859  Q
    |||| |||||||||    
T  24383359 gacagctatcaaaa 24383372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 362 - 551
Target Start/End: Complemental strand, 22158610 - 22158423
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||  ||||| ||||||||||||||    
T  22158610 tgttgagacaaaatccttatttgatattttaaagattacaaacatatta-atttatttaatcttgttatctactaatt-ttttttgtgagaatttgtttc 22158513  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatgg 551  Q
    ||||||||||| |||||||||| ||| | | |||| | ||   ||||||||||||||||||  ||||||  |||||  ||||||||||||    
T  22158512 atgagaatgaattgagaacgttatggaatatacgaagcaaccaaaatagtacatcaaaagtatacaagtcagcacaagaagaaagcatgg 22158423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 363 - 551
Target Start/End: Complemental strand, 22129459 - 22129272
Alignment:
Q  363 gttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttca 462  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| | |||| ||| |||||||||||    
T  22129459 gttgagacaaaatctttatttgatgttttaaagattacaaacatattaaatttatttaattttgttatctactaatttg-ttttgtgacaatttgtttca 22129361  T
Q  463 tgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatgg 551  Q
     ||||| ||||||| |||||| ||| | | | || | |||  ||||||||||||||||||  ||||||  |||||  ||||||||||||    
T  22129360 cgagaacgaactgataacgttatggaatatatgaagcaaacaaaatagtacatcaaaagtatacaagtcagcacaagaagaaagcatgg 22129272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 11978964 - 11979035
Alignment:
Q  85 tcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||||||||||| || ||||||||||||||    
T  11978964 tcttccggtttactttctttccttcttcatggcacccacatgtataatttcttctatcgaatctttatttaa 11979035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 262 - 359
Target Start/End: Complemental strand, 20252746 - 20252649
Alignment:
Q  262 gaatttaatattgcgtttttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggaggt 359  Q
    ||||||||| |  |||| || ||||| |||||||||||||||||| ||||||||| |||||| |||||||| ||||| ||||||||||| ||||||||    
T  20252746 gaatttaatttgtcgttattggggaagtggtgttggaggatgttggtagataaggaagggttgtggtatcgtgtcctaaaggctaggtatggggaggt 20252649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 17697453 - 17697388
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||||||||||||||||||||| |||||||||||| ||  |||||||||||| |||||||||    
T  17697453 tctcttccggtttactttctttcctttttcaaggcacctgcaggtataatttcttctattgaatct 17697388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 17947218 - 17947136
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||| |||||| |  |||||||||||||||||||||||||| |||| ||||||| ||  |||||||||||| |||||||||    
T  17947218 tgaaatatgtcatatcctctcttccggtttactttctttcctttttcatggcacctgcaggtataatttcttctattgaatct 17947136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 41768184 - 41768249
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||||||||||||| ||||||| ||||| || |||||| |||||||||| || |||||||||    
T  41768184 tctcttccggtttactttatttcctttttcaaagcccctacagatataatttcctctattgaatct 41768249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 43463677 - 43463742
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||| ||||||||||||||||| ||| ||||| || ||||||| |||||||||||| |||||||||    
T  43463677 tctcctccggtttactttcttttctttttcaaagcccctacatgtataatttcttctattgaatct 43463742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 20427495 - 20427546
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggc 117  Q
    |||||| ||||||||  ||||||||| |||||||||||||||||||||||||    
T  20427495 tgaaatatgtcatgtcctctcttccgatttactttctttccttcttcaaggc 20427546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 27529767 - 27529693
Alignment:
Q  65 ttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttcc 139  Q
    ||||||| |||| |||  ||||||||| |||||||||||||| | |||||||| || |||| |||||||||||||    
T  27529767 ttgaaatatgtcttgtcttctcttccgatttactttctttccgttttcaaggctcccacatgtataatttcttcc 27529693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 6023720 - 6023639
Alignment:
Q  67 gaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||| |||||||| | ||||||||||||| |||||||||| |||||||| |||  |  |||| ||||||| |||||||||    
T  6023720 gaaattggtcatgttctttcttccggtttacattctttcctttttcaaggcccctgtaggtatattttcttctattgaatct 6023639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 13581818 - 13581867
Alignment:
Q  368 gacaaaatccttatttgatgttttaaagattacaaacatattatatttat 417  Q
    ||||||||||| |||| || ||||||||||||||||||||||| ||||||    
T  13581818 gacaaaatcctcattttatattttaaagattacaaacatattaaatttat 13581867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 13588606 - 13588557
Alignment:
Q  368 gacaaaatccttatttgatgttttaaagattacaaacatattatatttat 417  Q
    ||||||||||| |||| || ||||||||||||||||||||||| ||||||    
T  13588606 gacaaaatcctcattttatattttaaagattacaaacatattaaatttat 13588557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 13589499 - 13589450
Alignment:
Q  368 gacaaaatccttatttgatgttttaaagattacaaacatattatatttat 417  Q
    ||||||||||| |||| || ||||||||||||||||||||||| ||||||    
T  13589499 gacaaaatcctcattttatattttaaagattacaaacatattaaatttat 13589450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 21823892 - 21823933
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctaca 124  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  21823892 tctctcccggtttactttctttccttcttcaaggcccctaca 21823933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 21273181 - 21273105
Alignment:
Q  73 tgtcatgttatctcttccggtttactttcttt-ccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    ||||||||  ||||| |||||||||||||||| |||| |||||||| ||||||| ||| ||||||||  ||||||||    
T  21273181 tgtcatgtcctctctcccggtttactttctttccctttttcaaggctcctacatgtattatttcttctgttgaatct 21273105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 35728988 - 35728940
Alignment:
Q  380 atttgatgttttaaagattacaaacatattatatttatttaatcttgtt 428  Q
    ||||||||||||||||||| ||||||||||| ||||||  |||||||||    
T  35728988 atttgatgttttaaagattgcaaacatattaaatttatccaatcttgtt 35728940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 336
Target Start/End: Complemental strand, 27529512 - 27529457
Alignment:
Q  281 tagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtc 336  Q
    ||||||| ||| |||||||||||||| | ||||||| |||||| ||||||||||||    
T  27529512 tagggaagtggagttggaggatgttggttgataaggaagggttgtggtatcgagtc 27529457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 280 - 358
Target Start/End: Complemental strand, 9195702 - 9195624
Alignment:
Q  280 ttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggagg 358  Q
    |||||||| ||||| |||||| ||||| | ||||||| |||||| ||||| |||||  | ||||||||||| |||||||    
T  9195702 ttagggaagtggtgatggaggttgttggttgataaggaagggttgtggtaccgagttttaaaggctaggtatggggagg 9195624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 479016 - 478947
Alignment:
Q  87 ttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||| || ||||||||||||||||| || ||  ||  |||||||||| || ||||||||||||||||    
T  479016 ttccggtctattttctttccttcttcaaagccccctcaggtataatttctacccttgaatctttatttaa 478947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 362 - 859
Target Start/End: Complemental strand, 27138 - 26638
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  27138 tgttgagacaaaatccttatttaatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgttttg-tgagaatttgtttc 27040  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    |||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  27039 atgagaatgaacagagaacgttctggcaaaaacgatgaaaatggaacagtacatcaaaagtgaacaagtctgcacagcaagaaagcatggctgattatgt 26940  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| ||||||||||    
T  26939 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaagaaaagcccattaatctctcatggataagatcacatggcttatttaag 26840  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagcaagcaacag 760  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||  |||| |||||  ||||||||||    
T  26839 catgacatcactaaagcaaaaggacatgacatcatcagcattgggcagcaagttatacagctcattacagctgattaactcatgcgcatacaagcaacag 26740  T
Q  761 tgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatcaa 857  Q
    || |||||||||||  |||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||||    
T  26739 tgctttcaaagccagacaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggatagctatcaa 26640  T
Q  858 aa 859  Q
    ||    
T  26639 aa 26638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 362 - 889
Target Start/End: Complemental strand, 31711487 - 31710966
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  31711487 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgttttg-tgagaatttgtttc 31711389  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||||| ||||||||||||||||||||||||||||  || | |||||||||||||||||||| ||||||| |||||||||||  |||||||||    
T  31711388 atgagaatgaactcagaacgttctggcaaaaacgatgaaaatagaacaatacatcaaaagtgaacaagtctgcacagaaagaaagcatgactgattatgt 31711289  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaagaaagcccattaatatctcatggttaagatcacatgacttatttaagc 661  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  31711288 tttaataaatgtctattgggccataagaaaagctttaagcccatttgaaaaagaaagcccattaatatctcatgaataagatcacatggcttatttaagc 31711189  T
Q  662 atgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagcaagcaacagt 761  Q
    |||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31711188 atgacatcactaaagcaaagggacatgacatcatcagcattgggcaacaagttatacagctcattacaactggttctctcacgcgcaagcaagcaacagt 31711089  T
Q  762 gttttcaaagccaagcaaatcagaaagaacattatgagacgttctggcta-ttttaagaag-aaagagaaatcaattgagactttggacaactatc-aaa 858  Q
    | ||||||||||| | |||||||||||||||          ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||    
T  31711088 gctttcaaagccaggaaaatcagaaagaaca----------ttctggctatttttaagaagaaaagagaaatcaattgagactttggacaactatcaaaa 31710999  T
Q  859 acgcgtc--acagctccattttctcccttgatc 889  Q
    |||||||  ||| ||| |||||||| |||||||    
T  31710998 acgcgtccaacaactctattttctcacttgatc 31710966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 360 - 889
Target Start/End: Complemental strand, 24023775 - 24023242
Alignment:
Q  360 tgtgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtt 459  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  24023775 tgtgttgagaaaaaatccttatttgatgttt-aaagattacaaacatattatatttatttaatcttgttatctactaattcgttttg-tgagaatttgtt 24023678  T
Q  460 tcatgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattat 559  Q
    ||||||||||||||| |||||||||||| ||| ||||||||| ||||| |||||||||||  | ||||||| ||||||    | |||||||| || ||||    
T  24023677 tcatgagaatgaactaagaacgttctggaaaatacgatgaaagtgaaacagtacatcaaagataaacaagtctgcacaatgtgtaagcatggctggttat 24023578  T
Q  560 gttttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaagaaagcccattaatatctcatggttaagatcacatgacttatttaa 659  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||| |||| | |     
T  24023577 gttttaataaatgtctattcggccataagaaaagctttaagcctatttggaaaagaaagtccattgatatctcatggataagatcacatggcttactaag 24023478  T
Q  660 gcatgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagcaagcaaca 759  Q
    |||||| |||||||||||||||||||||||| ||||||| | || || |||||||| |||||||||||||| ||||||||||||||||||| ||||||||    
T  24023477 gcatgacatcactaaagcaaaaggacatgacctcatcagaattgagcgacaagttaaacagctcattacagttggttctctcacgcgcaagaaagcaaca 24023378  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| ||||||||  | |||| ||||| |||||||| | || |||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||     
T  24023377 gtgctttcaaagtaaggcaattcagacagaacattctaagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggatagctatca 24023278  T
Q  856 aaaacgcgtc--acagctccattttctcccttgatc 889  Q
    |||||| |||  ||| ||| ||||||||||||||||    
T  24023277 aaaacgtgtccaacaactctattttctcccttgatc 24023242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 374 - 889
Target Start/End: Original strand, 14272213 - 14272743
Alignment:
Q  374 atccttatttgatgttttaaa-gattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttcatgagaatgaa 472  Q
    ||||| ||||||||||||||| ||| ||||| |||||| | |||||  || ||||||| || | |||||||||  |||||||||||||||||||||||||    
T  14272213 atcctcatttgatgttttaaaagataacaaaaatattacaattatt--attttgttatctattgattcgttttg-tgagaatttgtttcatgagaatgaa 14272309  T
Q  473 ctgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgttttaataaatg 572  Q
    ||||||||||||||||| | |||| |||| || || || ||||||||||||||||||| |||||| ||||||||||||   ||||||  ||| | | |||    
T  14272310 ctgagaacgttctggcatatacgaagaaattggaaaagcacatcaaaagtgaacaagtctgcacaacaagaaagcatgacagattattatttgaaagatg 14272409  T
Q  573 tctattgggccataagaaaagctttaagcccatt----tggaaaag------aaagcccattaatatc----tcatggttaagatcacatgacttattta 658  Q
    | ||||||||| ||||||    ||||  ||||||    || |||||      ||||   || ||||||    |||||| ||||| || |||  ||||| |    
T  14272410 tatattgggccttaagaatgaatttacacccatttagatgcaaaaggtccgtaaag--aataaatatcttactcatggataagagcatatggtttattaa 14272507  T
Q  659 agcatgatatcactaaagcaaaaggac-atgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagcaagcaa 757  Q
    ||||||| ||||||||||| ||||||| ||||||| |||| || ||||||||||| || ||| |||||||||| |||||||| | | |||||||||||||    
T  14272508 agcatgacatcactaaagc-aaaggacaatgacataatcaacattgggcaacaag-taaacaactcattacagttggttctccccctcgcaagcaagcaa 14272605  T
Q  758 cagtgttttcaaagccaagcaaatcagaaagaacattatg-agacgttctggctattt-taagaag-aaagagaaatcaattgagactttggacaactat 854  Q
    || || ||||||||  | |||| ||||| |||||||| || | ||||||||||||||| |||| || |||||||||||||||||||||||||||| ||||    
T  14272606 caatgctttcaaagttaggcaattcagacagaacattctgaaaacgttctggctatttataagtagaaaagagaaatcaattgagactttggacagctat 14272705  T
Q  855 c-aaaacgcgtc--acagctccattttctcccttgatc 889  Q
    | |||||| |||  ||| ||| ||||||||||||||||    
T  14272706 caaaaacgtgtccaacaactctattttctcccttgatc 14272743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 45702658 - 45702531
Alignment:
Q  29 aataaattcctgtccttcggaggtcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatata 128  Q
    ||||||||| |||| || || ||||||||  | ||| |||| | ||||||||  ||||||||||||||||||||||||||||||||||| ||||||  ||    
T  45702658 aataaattcttgtcgtttggtggtcgcctagttcttctgaagtctgtcatgtcctctcttccggtttactttctttccttcttcaaggctcctacaggta 45702559  T
Q  129 taatttcttccattgaatctttatttaa 156  Q
    ||||||| || || ||||||||||||||    
T  45702558 taatttcctctatcgaatctttatttaa 45702531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 33036384 - 33036310
Alignment:
Q  82 atctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||||||||||||||||||||||||||||||||| || |||  ||||||||||||||| ||||||||||||||    
T  33036384 atctcttccggtttactttctttccttcttcaaggcccccacaggtataatttcttccatcgaatctttatttaa 33036310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 45469633 - 45469506
Alignment:
Q  29 aataaattcctgtccttcggaggtcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatata 128  Q
    ||||||||| |||| || || ||||||||  | ||| |||| ||| ||||||  ||||||||||||||||||||||||||||||||||| ||||||  ||    
T  45469633 aataaattcttgtcgtttggtggtcgcctggttcttctgaagtttttcatgtcctctcttccggtttactttctttccttcttcaaggctcctacaggta 45469534  T
Q  129 taatttcttccattgaatctttatttaa 156  Q
    ||||||| || || ||||||||| ||||    
T  45469533 taatttcctctatcgaatctttagttaa 45469506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 13139227 - 13139141
Alignment:
Q  62 cttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||||| |||||| |  ||||||||||||||||||||||||||||||||| ||||| ||  |||||||||||| || ||||||    
T  13139227 cttttgaaatatgtcatatcctctcttccggtttactttctttccttcttcaagacacctgcaagtataatttcttctatcgaatct 13139141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 262 - 358
Target Start/End: Complemental strand, 3251293 - 3251197
Alignment:
Q  262 gaatttaatattgcgtttttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggagg 358  Q
    ||||||||| |||| ||||||||||| |||||||||   |||||| | |||||||  |||||||||||||||||| | |||||||||||||| ||||    
T  3251293 gaatttaatgttgcttttttagggaagtggtgttggcatatgttggtggataaggaggggttatggtatcgagtcttaaaggctaggtacggagagg 3251197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 355173 - 355235
Alignment:
Q  86 cttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||||||||||||||||||||||||||| ||  ||| |||||||||||| |||||||||    
T  355173 cttccggtttactttctttccttcttcaaggctcccgcatgtataatttcttctattgaatct 355235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 26403641 - 26403719
Alignment:
Q  68 aaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaat 146  Q
    |||| ||||||||  |||||||| ||||||||||||||||| ||| |||| ||||||| |||||||||||| |||||||    
T  26403641 aaatctgtcatgtcctctcttccagtttactttctttcctttttccaggctcctacatgtataatttcttctattgaat 26403719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 17007543 - 17007502
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctaca 124  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17007543 tctcttccggtttactttctttccttcttcaaggcacctaca 17007502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 17065092 - 17065051
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctaca 124  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17065092 tctcttccggtttactttctttccttcttcaaggcacctaca 17065051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 37326599 - 37326526
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||||||||||||||||||||||| ||||| || | | ||| |||||||||||| ||||||||| |||||||    
T  37326599 tctcttccggtttactttctttcctttttcaaagctcatgcatgtataatttcttctattgaatctatatttaa 37326526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 40903455 - 40903520
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||||||||||||||||||||| |||||||| ||| ||  |||||||||||| |||||||||    
T  40903455 tctcttccggtttactttctttcctttttcaaggcccctgcaggtataatttcttctattgaatct 40903520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 5664073 - 5663998
Alignment:
Q  73 tgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    ||||||||  |||||||||||||||||||||||||| ||||| || ||| ||  |||||||||||| |||||||||    
T  5664073 tgtcatgtcctctcttccggtttactttctttcctttttcaaagcccctgcaggtataatttcttctattgaatct 5663998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 1841966 - 1842046
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaat 146  Q
    |||||||||||||||  |||||||||||||||||||||||||| | ||| || ||| ||  |||||||| ||| |||||||    
T  1841966 tgaaatttgtcatgtcctctcttccggtttactttctttccttttccaaagcccctgcaagtataatttattctattgaat 1842046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 3251493 - 3251401
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaaga 158  Q
    |||||| |||| ||| |||| ||||||||||||||||||||||||| | ||| || |||  |||||||||||| || |||||| | |||||||    
T  3251493 tgaaatctgtcctgtcatctattccggtttactttctttccttcttgagggctcccacaggtataatttcttctatcgaatctatctttaaga 3251401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 16936879 - 16936843
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcac 119  Q
    |||||||||||||||||||||||||||||||||||||    
T  16936879 tctcttccggtttactttctttccttcttcaaggcac 16936843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 22870448 - 22870367
Alignment:
Q  65 ttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaat 146  Q
    |||||||||||| |||  |||||||||||||||||| |||| || || ||||| ||||||  |||| ||||||| |||||||    
T  22870448 ttgaaatttgtcctgtcctctcttccggtttactttatttcattttttaaggcccctacaagtatactttcttctattgaat 22870367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 10236011 - 10235939
Alignment:
Q  289 tggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggaggttg 361  Q
    ||||||||| | |||||| | |||||||  || |||||||||||||| || ||||||||||||| ||||||||    
T  10236011 tggtgttggcgtatgttggttgataaggagggtttatggtatcgagttctaaaggctaggtacgaggaggttg 10235939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 39529829 - 39529773
Alignment:
Q  82 atctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttc 138  Q
    |||||||||||| ||||||||||||||||||||||| || |||| ||| | ||||||    
T  39529829 atctcttccggtctactttctttccttcttcaaggctcccacatgtatcacttcttc 39529773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 42051547 - 42051627
Alignment:
Q  68 aaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||| |||| ||| ||| || |||||||| ||| ||||||||||||||||||| |||  |||||| |||||||| ||||||    
T  42051547 aaatatgtcctgtcatccctaccggtttattttatttccttcttcaaggcacccacaggtataatctcttccatcgaatct 42051627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 13353145 - 13353200
Alignment:
Q  62 cttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggc 117  Q
    ||||||||||||| |||||| |||||||| |||||||| ||||  |||||||||||    
T  13353145 cttttgaaatttgacatgttttctcttccagtttacttcctttttttcttcaaggc 13353200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 45702403 - 45702324
Alignment:
Q  280 ttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggaggt 359  Q
    |||||||| |||||||||||  ||||| | ||||||| |||||| |||||||| ||  | ||||||||||| ||||||||    
T  45702403 ttagggaagtggtgttggagactgttggttgataaggaagggttgtggtatcgtgttttaaaggctaggtatggggaggt 45702324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 45718042 - 45717975
Alignment:
Q  50 ggtcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggc 117  Q
    |||||||| ||| | ||||||| |||| |||  || || |||||||||||||||||||||||||||||    
T  45718042 ggtcgcctgatattgttgaaatctgtcctgtcttcgctcccggtttactttctttccttcttcaaggc 45717975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 27421450 - 27421500
Alignment:
Q  374 atccttatttgatgttttaaagattacaaacatattatatttatttaatct 424  Q
    ||||||||||||||||||||| ||||||||||  |||||||| ||| ||||    
T  27421450 atccttatttgatgttttaaatattacaaacaggttatatttgttttatct 27421500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 23479782 - 23479831
Alignment:
Q  98 tttctttccttcttcaaggcacctacatatataatttcttccattgaatc 147  Q
    |||||||||||||||||||| ||| ||| ||| |||||||| ||||||||    
T  23479782 tttctttccttcttcaaggctcctgcatgtatcatttcttctattgaatc 23479831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 26245804 - 26245869
Alignment:
Q  52 tcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggc 117  Q
    |||||| ||| | ||||||| |||| |||  || || |||||||||||||||||||||||||||||    
T  26245804 tcgcctgatattgttgaaatctgtcctgtcttcgctcccggtttactttctttccttcttcaaggc 26245869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 27270331 - 27270404
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||| | |||||| ||||||||||||| || |||| |  |||  ||||||||||||||||| |||||||    
T  27270331 tctcttccgatctactttatttccttcttcaaagctcctataggtatcgtttcttccattgaatctatatttaa 27270404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 27336009 - 27336054
Alignment:
Q  173 gtgaggattttaggaaaattgcttgggtcgactgggactctatttg 218  Q
    ||||||||  |||||||||||||||||| |||||| ||||||||||    
T  27336009 gtgaggataataggaaaattgcttgggttgactggaactctatttg 27336054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 362 - 889
Target Start/End: Original strand, 15172471 - 15173006
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    |||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  15172471 tgttgagacaaaatccttattccatgttttaatgattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 15172570  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    |||||||||||||||||| |||||||| |||||||| |||||| || |||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  15172571 atgagaatgaactgagaatgttctggcgaaaacgataaaaatggaacagtacatcaaaagtgaacaagtctgcacagcaagaaagcatggctgattatgt 15172670  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||| |||||    
T  15172671 tttaataaatctctattgggccataagaaaagatttaagcccatttggaaaagtaaagcccattaatctctcatggataagatcacatggcttacttaag 15172770  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| |||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||||||| ||||| |||||||| ||||||||    
T  15172771 catgacatcactaaagcaaaaggacatgacatcatcagaagtgagcagcaagttatacagctcattatagctggttatctcatgcgcaagcaaagcaaca 15172870  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  15172871 gtgctttcaaagccaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 15172970  T
Q  856 aaaacgcgtc--acagctccattttctcccttgatc 889  Q
    |||||| |||  ||||||| ||||||||||||||||    
T  15172971 aaaacgtgtccaacagctctattttctcccttgatc 15173006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 362 - 889
Target Start/End: Original strand, 15201897 - 15202432
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  15201897 tgttgagacaaaatccttatttgatgcgttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 15201996  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
     ||||||||||||||||| |||||||| ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  15201997 gtgagaatgaactgagaatgttctggcgaaaacgatgaaaatggaacagtacatcaaaagtgaacaagtctgcacagcaagaaagcatggctgattatgt 15202096  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||| || |||||||||||| |||| |||||    
T  15202097 tttaataaatgtctattgggccataagaaaagatttaagcccatttggaaaagtaaaacccattaatctctcacggataagatcacatggcttacttaag 15202196  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| ||||| |||||||| ||||||||    
T  15202197 catgacatcactaaagcaaaaggacatgacatcatcagaagtgggcagcaagttatacaactcattacagctggttatctcatgcgcaagcaaagcaaca 15202296  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacatt-atgagacgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| ||| |||||||  |||||||||||||||||| ||   |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  15202297 gtgcttttaaagccagacaaatcagaaagaacattcatagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 15202396  T
Q  856 aaaacgcgtc--acagctccattttctcccttgatc 889  Q
    |||||| |||  ||| ||| ||||||||||||||||    
T  15202397 aaaacgtgtccaacaactctattttctcccttgatc 15202432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 362 - 889
Target Start/End: Complemental strand, 4119449 - 4118925
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  4119449 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgttttg-tgagaatttgtttc 4119351  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  4119350 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaatggaacggtacatcaaaagtgaacaagtatgcacagcaagaaagcatggctgattatgt 4119251  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    ||||||          ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||||||| |||| |||||    
T  4119250 tttaat----------tgggccataagaaaagctttaagcccatttgaaaaagtaaagcccattaatttctcatggataagatcacatggcttacttaag 4119161  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||    
T  4119160 catgacatcactaaagcaaaaggacatgacatcatcagaagtgagcaacaagttatacagctcattaaagctggttatctcatgcgcaagcaaagcaaca 4119061  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| ||||||||||| ||||||||||||||||||| |||| ||||| |||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  4119060 gtgctttcaaagccaggcaaatcagaaagaacattctgagaacgttttggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 4118961  T
Q  856 aaaacgcgtc--acagctccattttctcccttgatc 889  Q
    |||||| |||  ||||||| ||||||||||||||||    
T  4118960 aaaacgtgtccaacagctctattttctcccttgatc 4118925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 362 - 886
Target Start/End: Original strand, 7592171 - 7592690
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||| ||||    
T  7592171 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgttttg-tgagaatttttttc 7592269  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| |||||| |||||||| ||||||||||||||| || ||||| |||||||||||||||| |||||||||||||||||||| |||||||||    
T  7592270 atgagaatgaaatgagaatgttctggcgaaaacgatgaaaatggaacagtacgtcaaaagtgaacaagtctgcacagcaagaaagcatggctgattatgt 7592369  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
                ||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| |||||||||||| |||| |||||    
T  7592370 ------------ctattggtccataagaaaagctttaagcccgtttggaaaagtaaagcccattaatctctcatggataagatcacatggcttacttaag 7592457  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  7592458 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaaca 7592557  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  7592558 gtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 7592657  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  7592658 aaaacgtgtccaacagctctattttctcccttg 7592690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 361 - 563
Target Start/End: Original strand, 7590189 - 7590390
Alignment:
Q  361 gtgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgttt 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||    
T  7590189 gtgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcg-ttttgtgagaatttgttt 7590287  T
Q  461 catgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatg 560  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||| ||| ||||||||    
T  7590288 catgataatgaaatgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcttggctgattatg 7590387  T
Q  561 ttt 563  Q
    |||    
T  7590388 ttt 7590390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 7288220 - 7288130
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||||||||||| |||  |||||||||||| ||||||||| |||||||    
T  7288220 tgaaatttgtcatgtcgtctcttctggtttactttctttccttcttcaaggcacccacaggtataatttcttctattgaatctatatttaa 7288130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 6457744 - 6457818
Alignment:
Q  82 atctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| || || ||||||||||||||    
T  6457744 atctcttccggtttactttctttctttcttcaaggcacctacatgtataatttcctctatcgaatctttatttaa 6457818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 9601598 - 9601531
Alignment:
Q  89 ccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||||||||| ||||||||||||||    
T  9601598 ccggtttactttctttccttcttcaaggcccctacaggtataatttcttccatcgaatctttatttaa 9601531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 9829169 - 9829102
Alignment:
Q  89 ccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||||||||| ||||||||||||||    
T  9829169 ccggtttactttctttccttcttcaaggcccctacaggtataatttcttccatcgaatctttatttaa 9829102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 27292881 - 27292963
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||| ||||||||  |||||||||||||||||||||||||| |||||||||||| ||  |||||||||||| ||| |||||    
T  27292881 tgaaatctgtcatgtcctctcttccggtttactttctttcctttttcaaggcacctgcaggtataatttcttctattaaatct 27292963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 44232496 - 44232578
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||| ||||||||  | |||||||||||||||||||||||||||||||||| | |||| |||||||| ||| |||||||||    
T  44232496 tgaaatctgtcatgtcgtatcttccggtttactttctttccttcttcaaggcatccacatgtataattttttctattgaatct 44232578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 281 - 358
Target Start/End: Complemental strand, 3942705 - 3942628
Alignment:
Q  281 tagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggagg 358  Q
    ||||||| ||| |||||||||||||| | |||||||  ||||| |||||||||||||| |||||||||||||||||||    
T  3942705 tagggaagtggagttggaggatgttggttgataaggaggggttgtggtatcgagtcctgaaggctaggtacggggagg 3942628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 641565 - 641647
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||| ||||||||  ||||| |||||||||||||||||||| |||||||||||||||  |||| |||| || |||||||||    
T  641565 tgaaatctgtcatgtcttctctaccggtttactttctttcctttttcaaggcacctacaggtatagtttcctctattgaatct 641647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 3942925 - 3942851
Alignment:
Q  65 ttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttcc 139  Q
    |||||||||||| |||  |||||||||||||||||||||||||| |||||||| || |||| |||| ||||||||    
T  3942925 ttgaaatttgtcctgtcttctcttccggtttactttctttcctttttcaaggctcccacatgtatattttcttcc 3942851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 48778957 - 48778895
Alignment:
Q  86 cttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||||||||||||||||||||||||||| ||  ||| |||||||||||| |||||||||    
T  48778957 cttccggtttactttctttccttcttcaaggctcccgcatgtataatttcttctattgaatct 48778895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 17195346 - 17195273
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||||| |||||||||||||||||||| || ||| ||  ||| |||||||| |||||||||||||||||    
T  17195346 tctcttccggtctactttctttccttcttcaaagctcctgcaggtatcatttcttctattgaatctttatttaa 17195273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 38430411 - 38430480
Alignment:
Q  87 ttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||||||||||||||||||||||||| || |||  |||||||||||| || |||||| |||||||    
T  38430411 ttccggtttactttctttccttcttcaaggcccccacaggtataatttcttctatcgaatctctatttaa 38430480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 12463671 - 12463743
Alignment:
Q  82 atctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttattt 154  Q
    |||||||||| ||||||||||||||||||||||||| ||  ||  ||||||||||||||| || |||||||||    
T  12463671 atctcttccgatttactttctttccttcttcaaggcccccgcaggtataatttcttccatcgattctttattt 12463743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 367 - 417
Target Start/End: Complemental strand, 2206899 - 2206849
Alignment:
Q  367 agacaaaatccttatttgatgttttaaagattacaaacatattatatttat 417  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| ||||||    
T  2206899 agacaaaattcttatttgatgttttaaatattacaaacatattaaatttat 2206849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 20367973 - 20367887
Alignment:
Q  68 aaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttattt 154  Q
    |||||||| ||||  |||||||| |||||||||||||||||||||||||| |   ||  ||||||||||||  ||||||||||||||    
T  20367973 aaatttgttatgtcgtctcttccagtttactttctttccttcttcaaggccctcgcaggtataatttcttcttttgaatctttattt 20367887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 8751135 - 8751176
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctaca 124  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  8751135 tctcttccggtttactttctttccttcttcaaggcgcctaca 8751176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 13063094 - 13063159
Alignment:
Q  89 ccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttattt 154  Q
    |||||||||||||||||||| ||||| || ||| ||  |||||||||||| |||||||||||||||    
T  13063094 ccggtttactttctttcctttttcaaagcccctgcaggtataatttcttctattgaatctttattt 13063159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 19322881 - 19322969
Alignment:
Q  60 tacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||||| | |||| |||  ||||||||||| |||||||||||||||||||| || ||  ||| ||| ||||| || |||||||||    
T  19322881 tacttttgaagtctgtcttgtcctctcttccggtctactttctttccttcttcaaagctcccgcatgtatcatttcctctattgaatct 19322969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 38431865 - 38431941
Alignment:
Q  283 gggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggaggt 359  Q
    ||||| ||||||||| | |||||  | |||||||  || ||||||||||||||| | ||||||||||||||||||||    
T  38431865 gggaagtggtgttggcgtatgttagtggataaggagggattatggtatcgagtcttaaaggctaggtacggggaggt 38431941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 577 - 606
Target Start/End: Original strand, 7590393 - 7590422
Alignment:
Q  577 ttgggccataagaaaagctttaagcccatt 606  Q
    ||||||||||||||||||||||||||||||    
T  7590393 ttgggccataagaaaagctttaagcccatt 7590422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 352
Target Start/End: Complemental strand, 21416774 - 21416637
Alignment:
Q  215 tttgttcaccaaaggtgtatggagggctgggggcgaggaagctgcgtgaatttaatattgcgtttttagggaattggtgttggaggatgttgttagataa 314  Q
    |||||| |||||||| | |||||| | | || | |||||||||| ||||||||||| |    || |||||||| ||||||||||| ||| |  |||||||    
T  21416774 tttgtttaccaaaggagaatggagagttaggtgtgaggaagctgtgtgaatttaatttgttattgttagggaagtggtgttggagaatgctagtagataa 21416675  T
Q  315 gggagggttatggtatcgagtccttaaggctaggtacg 352  Q
     |  || ||||||||||||||| | || ||||||||||    
T  21416674 agagggtttatggtatcgagtcttaaatgctaggtacg 21416637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 362 - 889
Target Start/End: Original strand, 37058240 - 37058774
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||  || |||||||||||    
T  37058240 tgttgagacaaaatcattatttgatgttttaaagattataaacatattatatttatttaatcttgttatctactaattcgttttg-tgcgaatttgtttc 37058338  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||||||||||||||||||| |||||||| |||||| || ||||||||||||||||||| || ||||||||| ||||||||||||||||||||    
T  37058339 atgagaatgaactgagaacgttctggcgaaaacgataaaaatggaacagtacatcaaaagtgaacaggtctgcacagcatgaaagcatggttgattatgt 37058438  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||| |||||    
T  37058439 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaatctctcatggataagatcacatggcttacttaag 37058538  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||| ||||| |||||||| || |||||    
T  37058539 catgacatcactaaagcaaaaggacatgacatcatcagaagtgggcacaaagttatacagctcattacagctggttatctcatgcgcaagcaaaacaaca 37058638  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  37058639 gtgctttcaaagccaggcaaatcagaaagaacattttgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 37058738  T
Q  856 aaaacgcgtc--acagctccattttctcccttgatc 889  Q
    |||||| |||  ||| ||| ||||||||||||||||    
T  37058739 aaaacgtgtccaacaactctattttctcccttgatc 37058774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 362 - 889
Target Start/End: Complemental strand, 15843932 - 15843398
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  15843932 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgttttg-tgagaatttgtttc 15843834  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||| |||||| |||||||||||||| |||||||     
T  15843833 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatggaacagtacatcaaaaatgaataagtctgcacaacaagaaagcatggtagattatga 15843734  T
Q  562 tttaataa-atgtctattgggccataagaaaagctttaagcccatttggaaaa-gaaagcccattaatatctcatggttaagatcacatgacttatttaa 659  Q
    ||| | |  |||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| | ||||||| | ||||||||||| |||||||||    
T  15843733 tttgaaatgatgtctcttgggtcataagaaaagctttaagcccatttggaaaaagaaagcccattagtctctcatgataaagatcacatggcttatttaa 15843634  T
Q  660 gcatgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagcaagcaaca 759  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||    
T  15843633 gcatgacatcactaaagcaaaaggacatgacatcatcagcattgggcagcaaattatacagctcattacagctggttatctcatgcgcaagcaagcaaca 15843534  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactat-c 855  Q
    ||| ||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||||||||||||||||||| ||| ||||      
T  15843533 gtgctttcaaagccaggcaaatcagaaagaacattatgagaacgttatggctattttaaagaagaaaagagaaatcaattgagactttgaacagctataa 15843434  T
Q  856 aaaacgcgtc--acagctccattttctcccttgatc 889  Q
    |||||| |||  ||||||| ||||||||||||||||    
T  15843433 aaaacgtgtccaacagctctattttctcccttgatc 15843398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 356 - 886
Target Start/End: Complemental strand, 3243310 - 3242791
Alignment:
Q  356 aggttgtgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatt 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||  ||||||||    
T  3243310 aggttgtgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatccactaattcgttttg-tgagaatt 3243212  T
Q  456 tgtttcatgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttga 555  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||| ||| |||    
T  3243211 tgtttcatgagaatgaaatgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcttggctga 3243112  T
Q  556 ttatgttttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgactta 654  Q
    ||            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      |||| |||||||||||| ||||    
T  3243111 tt------------atgtctattgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa------atggataagatcacatggctta 3243030  T
Q  655 tttaagcatgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aa 753  Q
     |||||||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||    
T  3243029 cttaagcatgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaa 3242930  T
Q  754 gcaacagtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaa 850  Q
    ||||||||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||     
T  3242929 gcaacagtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacag 3242830  T
Q  851 ctatc-aaaacgcgtc--acagctccattttctcccttg 886  Q
    ||||| |||||| |||  ||||||| |||||||||||||    
T  3242829 ctatcaaaaacgtgtccaacagctctattttctcccttg 3242791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 362 - 886
Target Start/End: Complemental strand, 54690932 - 54690417
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  54690932 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 54690833  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| |||||||||||| || || ||||||| ||||| |||||||| ||| |||||||||||| ||| |||||||||    
T  54690832 atgagaatgaaatgagaacgttctggcgaaaacgatgaaattggaacagtacattaaaagcgaacaagtctgctcagcaagaaagcttggctgattatgt 54690733  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    ||             |||||||||||||||||||||||||||||||||||||| ||||||||||||      | ||||||||||||||| |||| |||||    
T  54690732 tt-----------acttgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa------aaggttaagatcacatggcttacttaag 54690650  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  54690649 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaaca 54690550  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  54690549 gtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 54690450  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  54690449 aaaacgtgtccaacagctctattttctcccttg 54690417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 362 - 886
Target Start/End: Complemental strand, 54700363 - 54699848
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  54700363 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 54700264  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| |||||||||||| || || ||||||| ||||| |||||||| ||| |||||||||||| ||| |||||||||    
T  54700263 atgagaatgaaatgagaacgttctggcgaaaacgatgaaattggaacagtacattaaaagcgaacaagtctgctcagcaagaaagcttggctgattatgt 54700164  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    ||             |||||||||||||||||||||||||||||||||||||| ||||||||||||      | ||||||||||||||| |||| |||||    
T  54700163 tt-----------acttgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa------aaggttaagatcacatggcttacttaag 54700081  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  54700080 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaaca 54699981  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  54699980 gtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 54699881  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  54699880 aaaacgtgtccaacagctctattttctcccttg 54699848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 362 - 886
Target Start/End: Original strand, 3917236 - 3917750
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  3917236 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 3917335  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || |||||||||||||  ||||||| ||| |||||||||||| ||| |||||||||    
T  3917336 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcaaacaagtctgctcagcaagaaagcttggctgattatgt 3917435  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    ||             |||||||||||||||||||||||||||||||||||||| |||||||||||| ||      | |||||||||||| |||| |||||    
T  3917436 tt-----------acttgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa-at------gataagatcacatggcttacttaag 3917517  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  3917518 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaaca 3917617  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  3917618 gtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 3917717  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  3917718 aaaacgtgtccaacagctctattttctcccttg 3917750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 362 - 886
Target Start/End: Original strand, 26811680 - 26812192
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  26811680 tgttgagacaaaatccttatttgatgttttaaagattacaaacat--tatatttatttaatcttgttatctactaattcgttttg-tgagaatttgtttc 26811776  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| |||||||||||| || || ||||||||||||| |||||||| ||| |||||||||||| ||| |||||||||    
T  26811777 atgagaatgaaatgagaacgttctggcgaaaacgatgaaattggaacagtacatcaaaagcgaacaagtctgctcagcaagaaagcttggctgattatgt 26811876  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    ||             |||||||||||||||||||||||||||||||||||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  26811877 tt-----------acttgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 26811959  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  26811960 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaaca 26812059  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  26812060 gtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 26812159  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  26812160 aaaacgtgtccaacagctctattttctcccttg 26812192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 362 - 886
Target Start/End: Original strand, 26821147 - 26821659
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  26821147 tgttgagacaaaatccttatttgatgttttaaagattacaaacat--tatatttatttaatcttgttatctactaattcgttttg-tgagaatttgtttc 26821243  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| |||||||||||| || || ||||||||||||| |||||||| ||| |||||||||||| ||| |||||||||    
T  26821244 atgagaatgaaatgagaacgttctggcgaaaacgatgaaattggaacagtacatcaaaagcgaacaagtctgctcagcaagaaagcttggctgattatgt 26821343  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    ||             |||||||||||||||||||||||||||||||||||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  26821344 tt-----------acttgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 26821426  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  26821427 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaaca 26821526  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  26821527 gtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 26821626  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  26821627 aaaacgtgtccaacagctctattttctcccttg 26821659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 362 - 504
Target Start/End: Complemental strand, 39128714 - 39128573
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||  ||||| ||||||||||||||    
T  39128714 tgttgagacaaaatccttatttaatgttttaaagattacaaacatattatatttatttaattttgttatctact-atttttttttgtgagaatttgtttc 39128616  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatg 504  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  39128615 atgagaatgaactgagaatgttctggcagaaacgatgaaaatg 39128573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 168 - 358
Target Start/End: Complemental strand, 18870986 - 18870796
Alignment:
Q  168 gggatgtgaggattttaggaaaattgcttgggtcgactgggactctatttgttcaccaaaggtgtatggagggctgggggcgaggaagctgcgtgaattt 267  Q
    |||| |||||||||||||||||||| ||| |||||| ||||||||  |||||| ||| |||| | ||| ||||||| |||  ||||||||||| ||||||    
T  18870986 gggaggtgaggattttaggaaaatttctttggtcgattgggactcggtttgtttacctaaggaggatgaagggctgtgggttaggaagctgcgcgaattt 18870887  T
Q  268 aatattgcgtttttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggagg 358  Q
    |||||| |  ||||||| || |||||||||||| || | ||||||| ||  ||  | |||||||||||| | | ||| |||||||||||||    
T  18870886 aatatttcacttttaggtaaatggtgttggaggttgcttttagatacggagggcctttggtatcgagtcttaagggcaaggtacggggagg 18870796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 18871144 - 18871014
Alignment:
Q  26 aacaataaattcctgtccttcggaggtcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacat 125  Q
    |||| ||||||||| || || ||||| ||||| || || |||||||||||| | || ||||||||| ||||||||||||||||||||||||| || |||     
T  18871144 aacagtaaattcctttcattgggaggccgcctgattctcttgaaatttgtcctattgtctcttccgatttactttctttccttcttcaaggctcccacaa 18871045  T
Q  126 atataatttcttccattgaatctttatttaa 156  Q
     ||||||||| || |||||||||||||||||    
T  18871044 gtataatttcctctattgaatctttatttaa 18871014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 22196285 - 22196375
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||  |||||||||||  ||||||||| |||||||    
T  22196285 tgaaatttgtcatgtcgtctcttccggtttactttctttccttcttcaaggcacccacaggtataatttcttttattgaatctatatttaa 22196375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 50 - 156
Target Start/End: Original strand, 51071967 - 51072073
Alignment:
Q  50 ggtcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctt 149  Q
    |||||||| || ||||| |||| |||| ||  |||||| ||||||||||||||||||||||||||||| || |||  ||||||||||||||| |||||||    
T  51071967 ggtcgcctgatccttttcaaatctgtcctgacatctctaccggtttactttctttccttcttcaaggcccccacaggtataatttcttccatagaatctt 51072066  T
Q  150 tatttaa 156  Q
    |||||||    
T  51072067 tatttaa 51072073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 17188706 - 17188635
Alignment:
Q  85 tcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||||||| || || ||||||||||||||    
T  17188706 tcttccggtttactttctttctttcttcaaggcacctacaggtataatttcctctatcgaatctttatttaa 17188635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 28067079 - 28067154
Alignment:
Q  283 gggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggagg 358  Q
    ||||| |||||||||||||||||| | ||||||| |||||| |||||||| ||||||||||||||||| |||||||    
T  28067079 gggaagtggtgttggaggatgttggttgataaggaagggttgtggtatcgtgtccttaaggctaggtatggggagg 28067154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 17402514 - 17402601
Alignment:
Q  68 aaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttattta 155  Q
    |||| |||||||| |||| || ||||||| |||||||| ||||||||||| ||  || |||||||||||||||| |||||||||||||    
T  17402514 aaatctgtcatgtcatctgtttcggtttattttctttctttcttcaaggcccccccagatataatttcttccatagaatctttattta 17402601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 39867006 - 39867068
Alignment:
Q  94 ttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||||||||||||||||||||||||||||  ||||||||| || || ||||||||||||||    
T  39867006 ttactttctttccttcttcaaggcacctacaggtataatttcctctatcgaatctttatttaa 39867068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 37872080 - 37871997
Alignment:
Q  73 tgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||| ||| |||||||||||| |||||||||||||||||||| || ||  ||  ||| |||||||| |||||||||||||||||    
T  37872080 tgtcttgtcatctcttccggtctactttctttccttcttcaaagctcccgcaggtatcatttcttctattgaatctttatttaa 37871997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 53100353 - 53100400
Alignment:
Q  172 tgtgaggattttaggaaaattgcttgggtcgactgggactctatttgt 219  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||    
T  53100353 tgtgaggattttaggaaaattgcttgggtggattgggactctatttgt 53100400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 5320244 - 5320326
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||| |||||| |  ||||||||| ||||||||||||||||||||||||| ||  ||| |||||||||||| ||| |||||    
T  5320244 tgaaatctgtcatatcctctcttccgatttactttctttccttcttcaaggctcccgcatgtataatttcttctattaaatct 5320326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 368 - 406
Target Start/End: Complemental strand, 23443885 - 23443847
Alignment:
Q  368 gacaaaatccttatttgatgttttaaagattacaaacat 406  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23443885 gacaaaatccttatttgatgttttaaagattacaaacat 23443847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 36653106 - 36653033
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||| | |||||||||||||||||||| || ||  ||| ||| |||||||||||||||||| |||||||    
T  36653106 tctcttccgatctactttctttccttcttcaaagctcccgcatgtatcatttcttccattgaatctatatttaa 36653033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 10040061 - 10040149
Alignment:
Q  50 ggtcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttc 138  Q
    ||||||||  |||||||||||| |||| |||  || || ||||||||||||||||||||||||||||  ||| ||  ||||||||||||    
T  10040061 ggtcgcctggtacttttgaaatatgtcctgtcctcgctcccggtttactttctttccttcttcaaggtccctgcaagtataatttcttc 10040149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 17536051 - 17535999
Alignment:
Q  65 ttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggc 117  Q
    ||||||| |||||||  ||||||||||||||||||||||||||| ||||||||    
T  17536051 ttgaaatatgtcatgccatctcttccggtttactttctttcctttttcaaggc 17535999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 22741351 - 22741263
Alignment:
Q  62 cttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatcttt 150  Q
    |||||||||| |||| | |  ||||||||||||||||||||||| |  |||||||| | ||||| |||||| |||||| ||||||||||    
T  22741351 cttttgaaatatgtcctatcctctcttccggtttactttctttcttatttcaaggctcatacatgtataatctcttcccttgaatcttt 22741263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 23621971 - 23622007
Alignment:
Q  371 aaaatccttatttgatgttttaaagattacaaacata 407  Q
    |||||||||||||||||||||||||||||||||||||    
T  23621971 aaaatccttatttgatgttttaaagattacaaacata 23622007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 53481599 - 53481511
Alignment:
Q  68 aaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||| |||  ||||||| |||||||||||||||||| ||||| || ||| ||  | |||||||||| ||||||||| |||||||    
T  53481599 aaatttgtcttgtcctctcttctggtttactttctttcctttttcaaagcccctgcaggtctaatttcttctattgaatctatatttaa 53481511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 17188508 - 17188429
Alignment:
Q  280 ttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggaggt 359  Q
    |||||||| |||||||||||| ||||| | ||||||| |||||| |||||||| ||  | ||||||||||| ||||||||    
T  17188508 ttagggaagtggtgttggaggttgttggttgataaggaagggttgtggtatcgtgttttaaaggctaggtatggggaggt 17188429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 32320763 - 32320830
Alignment:
Q  89 ccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||||| ||| ||||| |||||||||| | |||| ||||||||||||  |||||||||||||||||    
T  32320763 ccggtttaatttatttccatcttcaaggctcatacaaatataatttcttttattgaatctttatttaa 32320830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 6355192 - 6355285
Alignment:
Q  62 cttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttattta 155  Q
    |||||||| | |||| |||  ||||||||||| || |||||||  ||||||||||| ||| ||| ||| || ||||| ||||||||||||||||    
T  6355192 cttttgaagtctgtcttgtcttctcttccggtctattttcttttgttcttcaaggctcctgcatgtatcatctcttctattgaatctttattta 6355285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 12727161 - 12727096
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||||||||||||||||||||| ||||| || ||| ||  || ||||||||| |||||||||    
T  12727161 tctcttccggtttactttctttcctttttcaaagcccctgcaggtacaatttcttctattgaatct 12727096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 46610788 - 46610679
Alignment:
Q  29 aataaattcctgtccttcggaggtcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatata 128  Q
    ||||||||||| ||  |||| ||||| ||  | ||| |||||| ||||||||  ||  |||||||||||||||||||||| ||||| || ||||||  ||    
T  46610788 aataaattcctttctctcggcggtcgtctggttcttctgaaatctgtcatgtcttccattccggtttactttctttcctttttcaaagcccctacaggta 46610689  T
Q  129 taatttcttc 138  Q
    ||||||||||    
T  46610688 taatttcttc 46610679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 9897919 - 9897847
Alignment:
Q  84 ctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||||| | |||||||||||||||||||| ||  || ||  ||| |||||||||||||||||| |||||||    
T  9897919 ctcttccgatctactttctttccttcttcaaagcttctgcaggtatcatttcttccattgaatctatatttaa 9897847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 17239022 - 17239066
Alignment:
Q  368 gacaaaatccttatttgatgttttaaagattacaaacatattata 412  Q
    ||||||||||| |||||||||| |||||||||||||||| |||||    
T  17239022 gacaaaatcctgatttgatgttgtaaagattacaaacattttata 17239066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 28066875 - 28066927
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttc 135  Q
    ||||||||||||||||||||||| || |||||||| ||||||  |||||||||    
T  28066875 tctcttccggtttactttctttcttttttcaaggctcctacaggtataatttc 28066927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 16698705 - 16698756
Alignment:
Q  62 cttttgaaatttgtcatgttatctcttccggtttactttctttccttcttca 113  Q
    |||||||||| ||||||||  ||||||| ||| |||||||||||||||||||    
T  16698705 cttttgaaatctgtcatgtcttctcttctggtctactttctttccttcttca 16698756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 359
Target Start/End: Original strand, 39867195 - 39867274
Alignment:
Q  280 ttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggaggt 359  Q
    |||||||| |||||||||||| ||||| | ||||| |  ||||| |||||||| ||  | ||||||||||||||||||||    
T  39867195 ttagggaagtggtgttggaggttgttggttgataaagacgggttgtggtatcgtgttttaaaggctaggtacggggaggt 39867274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 368 - 406
Target Start/End: Complemental strand, 16491085 - 16491047
Alignment:
Q  368 gacaaaatccttatttgatgttttaaagattacaaacat 406  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  16491085 gacaaaatccttatttgatgttttacagattataaacat 16491047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 23805169 - 23805251
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||| |||||| |||  ||| ||||||| || ||||||||||||||||||||  | |||| ||| |||||||| |||||||||    
T  23805169 tgaagtttgtcttgtcctcttttccggtctattttctttccttcttcaaggcttccacatgtatcatttcttctattgaatct 23805251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 10358395 - 10358440
Alignment:
Q  92 gtttactttctttccttcttcaaggcacctacatatataatttctt 137  Q
    |||||||||||||||||||||||||| || |||  |||||||||||    
T  10358395 gtttactttctttccttcttcaaggcccccacaggtataatttctt 10358440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 19499019 - 19498958
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattga 144  Q
    ||||| |||||||||||| ||||||| ||||| || ||| ||| |||||||||||| |||||    
T  19499019 tctctgccggtttactttatttcctttttcaaagcccctgcatgtataatttcttctattga 19498958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 39061080 - 39061007
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||| | |||||||| ||||||||||| || ||  ||| ||| ||||||||| |||||||| |||||||    
T  39061080 tctcttccgatctactttctgtccttcttcaaagctcccgcatgtatcatttcttcccttgaatctatatttaa 39061007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 48639407 - 48639472
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    ||||||||||| |||||||||||||||||||| || ||  ||| ||| ||||| || |||||||||    
T  48639407 tctcttccggtctactttctttccttcttcaaagctcccgcatgtatcatttcctctattgaatct 48639472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 362 - 886
Target Start/End: Complemental strand, 31832 - 31311
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  31832 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgttttg-tgagaatttgtttc 31734  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||| |||||| ||||||||||||  |||||||||    
T  31733 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagtgaacaagtctgcacaacaagaaagcatgactgattatgt 31634  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    ||||||          ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||| |||||    
T  31633 tttaat----------tgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaatctctcatggataagatcacatggcttacttaag 31544  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| | |||||| ||||||||    
T  31543 catgacatcactaaagcaaaaggacatgacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgtgcaagcaaagcaaca 31444  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  31443 gtgctttcaaagccaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 31344  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  31343 aaaacgtgtccaacagctctattttctcccttg 31311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 361 - 859
Target Start/End: Original strand, 9189 - 9700
Alignment:
Q  361 gtgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgttt 460  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||  |||| ||||||| |||||    
T  9189 gtgttgagacaaaatccgtatttgatgttttaaagattacaaacatattatattcatttagtcttgttatctactaattc-attttgtgagaatatgttt 9287  T
Q  461 catgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatg 560  Q
    ||| ||||  | ||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||| |||||| |||| ||||||||  |||| |     
T  9288 cataagaacaatctgagaacgttctggcaaatacgaagaaaatgaaatagtacatccaaagttaacaagtctgcacaacaagtaagcatggcagatttta 9387  T
Q  561 ttttaataaatgtctattgggccataagaaaagctttaagcccatttggaa-aagaaagcccatt--------aatatctcatggttaag-atcacatga 650  Q
      || | | |||||| ||||||||| |||||||  ||   |||| ||||||  | ||||| ||||        ||||||||||   |||| | ||||||     
T  9388 aattgaaacatgtctcttgggccattagaaaagggttcgacccacttggaagcaaaaagctcattggaaataaaatatctcattcataagaagcacatgg 9487  T
Q  651 cttatttaagcatgatatcactaaagcaaaaggacatgacatcatc-agcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaa 749  Q
     |||||||||||||| |||||||||| ||||||||||||||| ||| | || || ||||||| ||| ||| ||||||| |||||||||| |||| |||||    
T  9488 gttatttaagcatgacatcactaaagtaaaaggacatgacataatcaaacattgagcaacaatttaaacaactcattatagctggttctttcactcgcaa 9587  T
Q  750 gcaagcaacagtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggcta-ttttaagaag-aaagagaaatcaattgagactttgg 846  Q
    ||||||||||| |    |||||| | |||||||||| |||||||| |||| ||||||| |||| |||||||||| |||| |||| ||| |||||||||||    
T  9588 gcaagcaacagagcaagcaaagctaggcaaatcagacagaacattctgagaacgttctagctatttttaagaagaaaagtgaaaacaaatgagactttgg 9687  T
Q  847 acaactatcaaaa 859  Q
    ||| |||||||||    
T  9688 acagctatcaaaa 9700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 362 - 886
Target Start/End: Original strand, 18419722 - 18420236
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  18419722 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 18419821  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||| ||| |||||        
T  18419822 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcttggctgatt---- 18419917  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  18419918 --------atgtctattgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 18420003  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  18420004 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaaca 18420103  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  18420104 gtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 18420203  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  18420204 aaaacgtgtccaacagctctattttctcccttg 18420236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 362 - 889
Target Start/End: Complemental strand, 23896628 - 23896117
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  23896628 tgttgagacaaaatcattatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgttttg-tgagaatttgtttc 23896530  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||  || |||||||||||||||||||||             |||| |||| |||||||||    
T  23896529 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaattgaacagtacatcaaaagtgaacaag-------------aaagtatggctgattatgt 23896443  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    ||||||          ||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||| |||| |||||    
T  23896442 tttaat----------tgggccataagaaaagctttaagcccatttggaaaagtaaagtccattaatctctcatggataagatcacatggcttacttaag 23896353  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  23896352 catgacatcactaaagcaaaaggacatgacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaaca 23896253  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||     
T  23896252 gtgctttcaaagccaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacaactatca 23896153  T
Q  856 aaaacgcgtc--acagctccattttctcccttgatc 889  Q
    |||||| |||  ||||||| ||||||||||||||||    
T  23896152 aaaacgtgtccaacagctctattttctcccttgatc 23896117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 368 - 437
Target Start/End: Original strand, 12172458 - 12172527
Alignment:
Q  368 gacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaa 437  Q
    |||||||| |||||||||||||||||| ||||||||||||||| |||||||| |||||||||| ||||||    
T  12172458 gacaaaattcttatttgatgttttaaaaattacaaacatattaaatttatttcatcttgttatctactaa 12172527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 12334891 - 12334979
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttattt 154  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||||||| | |  |||||||||||| | ||||||| |||||    
T  12334891 tgaaatttgtcttgtcgtctcttccggtttactttctttccttcttcaaggcacccataggtataatttcttctactgaatctatattt 12334979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 15171513 - 15171432
Alignment:
Q  75 tcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||| |||||||||||||||||||||||  ||||||||||| || |||| |||||||||||| || ||||| ||||||||    
T  15171513 tcatgtcatctcttccggtttactttcttttgttcttcaaggcccccacatgtataatttcttctatcgaatcattatttaa 15171432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 15180285 - 15180204
Alignment:
Q  75 tcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||| |||||||||||||||||||||||  ||||||||||| || |||| |||||||||||| || ||||| ||||||||    
T  15180285 tcatgtcatctcttccggtttactttcttttgttcttcaaggcccccacatgtataatttcttctatcgaatcattatttaa 15180204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 15161518 - 15161427
Alignment:
Q  65 ttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||| |||||||| ||||||| |||||||||||||||  ||||||||| | || |||| |||||||||||| || ||||| ||||||||    
T  15161518 ttgaaatatgtcatgtcatctctttcggtttactttcttttgttcttcaagtctcccacatgtataatttcttctatcgaatcattatttaa 15161427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 15471900 - 15471981
Alignment:
Q  75 tcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||| ||| |||||||||||||||||||  ||||||||||| || |||| |||||||||||| || ||||| ||||||||    
T  15471900 tcatgtcatcccttccggtttactttcttttgttcttcaaggcccccacatgtataatttcttctatcgaatcattatttaa 15471981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 12608291 - 12608225
Alignment:
Q  90 cggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||||||||||||| |||||||||||||||  ||||||||| |  || ||||||||||||||    
T  12608291 cggtttactttctttcctttttcaaggcacctacaggtataatttcctttatcgaatctttatttaa 12608225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 2855533 - 2855468
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||||||||||||||||||||  |||||||||| | ||  |||||||||||| |||||||||    
T  2855533 tctcttccggtttactttctttcctatttcaaggcacttgcaggtataatttcttctattgaatct 2855468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 12913672 - 12913599
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||||| |||||||||||||||||||| || ||  ||  ||| |||||||| |||||||||||||||||    
T  12913672 tctcttccggtctactttctttccttcttcaaagctcccgcaggtatcatttcttctattgaatctttatttaa 12913599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 16479018 - 16478977
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctaca 124  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  16479018 tctctcccggtttactttctttccttcttcaaggcccctaca 16478977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 17739014 - 17738949
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    ||||||||  |||||||||||||||| ||||| || ||||||| |||||||||||| || ||||||    
T  17739014 tctcttcccttttactttctttcctttttcaaagcccctacatgtataatttcttctatcgaatct 17738949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 18488383 - 18488424
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctaca 124  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  18488383 tctctcccggtttactttctttccttcttcaaggcccctaca 18488424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 3298105 - 3298057
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaa 114  Q
    |||| ||||||||||  |||||||||||||||||||||||||| |||||    
T  3298105 tgaagtttgtcatgtcctctcttccggtttactttctttcctttttcaa 3298057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 117
Target Start/End: Original strand, 6345468 - 6345498
Alignment:
Q  87 ttccggtttactttctttccttcttcaaggc 117  Q
    |||||||||||||||||||||||||||||||    
T  6345468 ttccggtttactttctttccttcttcaaggc 6345498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 32186523 - 32186465
Alignment:
Q  100 tctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaaga 158  Q
    |||||| |||||||| || || ||| ||||||| |||||||||||| ||||||||||||    
T  32186523 tctttctttcttcaaagctccgacagatataatctcttccattgaaactttatttaaga 32186465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 10748104 - 10748055
Alignment:
Q  67 gaaatttgtcatgttatctcttccggtttactttctttccttcttcaagg 116  Q
    ||||| ||||||||| | |||| |||| ||||||||||||||||||||||    
T  10748104 gaaatctgtcatgttttttctttcggtctactttctttccttcttcaagg 10748055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 362 - 886
Target Start/End: Complemental strand, 28352739 - 28352225
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  28352739 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 28352640  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||| ||| |||||        
T  28352639 atgagaatgaattgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcttggctgatt---- 28352544  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  28352543 --------atgtctattgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 28352458  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||| ||||| |||||||||| ||||| |||||||| ||||||||    
T  28352457 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacaactcatcacagctggttatctcatgcgcaagcaaagcaaca 28352358  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  28352357 gtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 28352258  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  28352257 aaaacgtgtccaacagctctattttctcccttg 28352225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 362 - 886
Target Start/End: Complemental strand, 28368671 - 28368157
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  28368671 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 28368572  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||| ||| |||||        
T  28368571 atgagaatgaattgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcttggctgatt---- 28368476  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
            ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  28368475 --------atgtctattgggccataagaaaagctttaagcccatttgaaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 28368390  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  28368389 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaaca 28368290  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  28368289 gtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 28368190  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  28368189 aaaacgtgtccaacagctctattttctcccttg 28368157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 362 - 886
Target Start/End: Complemental strand, 28376489 - 28375975
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  28376489 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 28376390  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||| ||| |||||        
T  28376389 atgagaatgaattgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcttggctgatt---- 28376294  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
            ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  28376293 --------atgtctattgggccataagaaaagctttaagcccatttgaaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 28376208  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  28376207 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaaca 28376108  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  28376107 gtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 28376008  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  28376007 aaaacgtgtccaacagctctattttctcccttg 28375975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 362 - 886
Target Start/End: Complemental strand, 28384311 - 28383797
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  28384311 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 28384212  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||| ||| |||||        
T  28384211 atgagaatgaattgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcttggctgatt---- 28384116  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
            ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  28384115 --------atgtctattgggccataagaaaagctttaagcccatttgaaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 28384030  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  28384029 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaaca 28383930  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  28383929 gtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 28383830  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  28383829 aaaacgtgtccaacagctctattttctcccttg 28383797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 360 - 889
Target Start/End: Complemental strand, 38530163 - 38529638
Alignment:
Q  360 tgtgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtt 459  Q
    |||||||||| ||||||||||||| || |||||||||||||||||||||||||||||    |||||||||| ||||||||||||||  ||||||||||||    
T  38530163 tgtgttgagagaaaatccttatttaatattttaaagattacaaacatattatattta----atcttgttatctactaattcgttttg-tgagaatttgtt 38530069  T
Q  460 tcatgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattat 559  Q
    ||||||||||||||||||||||||||| |||| || ||||||||| || |||||||||||||||||||||| | |||| |||||||||||||  ||||||    
T  38530068 tcatgagaatgaactgagaacgttctgacaaatacaatgaaaatggaacagtacatcaaaagtgaacaagtctccacatcaagaaagcatggcagattat 38529969  T
Q  560 gttttaataa-atgtctattgggccataagaaaagctttaagcccatttggaaaagaaagcccattaatatctcatggttaagatcacatgacttattta 658  Q
      ||| | |  ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||      |||  |||||||||||| | | ||||    
T  38529968 tatttgaaatgatgtctattgggccataggaaaagctttaagcccatttgaaaaagaaagcccatcaa------atgaataagatcacatggcat-ttta 38529876  T
Q  659 agcatgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagcaagcaac 758  Q
    ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  38529875 agcatgacatcactaaagcaaaaggacatgacatcatcaacattgggcaacaagttaaacaactcattacagctggttctctcacgcgcaagcaagcaac 38529776  T
Q  759 agtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag--aaagagaaatcaattgagactttggacaactat 854  Q
    |||| |||||||| ||  ||| |||||||||||||| |||| ||| |||||||||||| ||||||  ||| |||||||||||||||||||||||||||||    
T  38529775 agtgctttcaaagtcagacaattcagaaagaacattctgagaacggtctggctattttaaagaagaaaaaaagaaatcaattgagactttggacaactat 38529676  T
Q  855 -caaaacgcgtc--acagctccattttctcccttgatc 889  Q
      |||||| |||  ||| ||| ||||||||||||||||    
T  38529675 aaaaaacgtgtccaacaactctattttctcccttgatc 38529638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 362 - 481
Target Start/End: Complemental strand, 24814629 - 24814515
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||| ||||| |||||||||| |||| ||||||||||||||    
T  24814629 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattata----tttaatctcgttatctactaattcg-ttttgtgagaatttgtttc 24814535  T
Q  462 atgagaatgaactgagaacg 481  Q
    ||||||||||| ||||||||    
T  24814534 atgagaatgaaatgagaacg 24814515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 173 - 358
Target Start/End: Original strand, 7581554 - 7581739
Alignment:
Q  173 gtgaggattttaggaaaattgcttgggtcgactgggactctatttgttcaccaaaggtgtatggagggctgggggcgaggaagctgcgtgaatttaatat 272  Q
    ||||||||||| |||||||||||||||| |||||||||||  |||||| ||| |||| | |||||||  | || | ||||||| ||| |||||||||| |    
T  7581554 gtgaggatttttggaaaattgcttgggttgactgggactcggtttgtttacctaaggaggatggaggtttaggcgtgaggaagttgcatgaatttaattt 7581653  T
Q  273 tgcgtttttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggagg 358  Q
     || ||  ||||||| ||| |||||||||||||| | || ||||  ||||| |||||||||||| | ||||||||||||| |||||    
T  7581654 agctttactagggaagtggagttggaggatgttggttgacaaggaggggttgtggtatcgagtcttgaaggctaggtacgaggagg 7581739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 14091490 - 14091564
Alignment:
Q  82 atctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||| ||||||||||||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||    
T  14091490 atctctaccggtttactttctttccttcttcaaggcccttacaggtataatttcttccattgaatctttatttaa 14091564  T

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Target: chr3; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 630 - 859
Target Start/End: Original strand, 4951018 - 4951250
Alignment:
Q  630 ctcatggttaagatcacatgacttatttaagcatgatatcactaaagcaaaaggacatgacatcatcagc-agtgggcaacaagttatacagctcattac 728  Q
    ||||||| ||||| |||||| |||||| | | |||| |||||||||||||||||||||||||| ||||   | || ||||||| | | |||||||||||     
T  4951018 ctcatggataagagcacatggcttattaaggtatgacatcactaaagcaaaaggacatgacataatcaaatattgagcaacaaataa-acagctcattat 4951116  T
Q  729 agctggttctctcacgcgcaagcaagcaacagtgttttcaaagccaagcaaatcagaaagaacattatgaga-cgttctggctatttt-aagaagaaa-g 825  Q
    || |  ||||||||| | ||||||||| | ||||    |||||| | |||||||||| | |||||||||||| ||||||  ||||||| ||||||||| |    
T  4951117 agttaattctctcactcacaagcaagctatagtgcaagcaaagctatgcaaatcagacataacattatgagaacgttcttcctatttttaagaagaaaag 4951216  T
Q  826 agaaatcaattgagactttggacaactatcaaaa 859  Q
    ||||||||||||||||||| ||||  ||||||||    
T  4951217 agaaatcaattgagactttagacagttatcaaaa 4951250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 362 - 445
Target Start/End: Original strand, 27168318 - 27168401
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttt 445  Q
    |||||||| |||||| |||||||||||||||||||  |||||||| ||||||||||||||||||||||| ||||| || |||||    
T  27168318 tgttgagataaaatctttatttgatgttttaaagaccacaaacatgttatatttatttaatcttgttatctactagtttgtttt 27168401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 59 - 331
Target Start/End: Original strand, 20356672 - 20356944
Alignment:
Q  59 atacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatcttta--tttaa 156  Q
    |||||| ||||||||||||||  |||||||| |||| |||||||||| ||||| |||||| | | |  |||||||||||| ||||||||||||  |||||    
T  20356672 atacttctgaaatttgtcatgccatctcttctggtt-actttctttctttctttaaggcatcaaaaggtataatttcttctattgaatctttatttttaa 20356770  T
Q  157 gagannnnnnngggatgtgaggattttaggaaaattgcttgggtcgactgggactctatttgttcaccaaaggtgtatggagggctgggggcgaggaagc 256  Q
     | |       ||||||||||||| ||||||||||  | ||||| || ||||||||| | |||| |||||||| | |||||||| |||| | ||||| ||    
T  20356771 aaaaaattggggggatgtgaggatattaggaaaatctcatgggttgattgggactctgtgtgtttaccaaaggaggatggagggttgggtgtgaggaggc 20356870  T
Q  257 tgcgtgaatttaatattgcgtttttagggaattggtgttggaggatgttgttagataagggagggttatggtatc 331  Q
    ||| ||| |||||| | ||  || |||| || ||||| ||||||||| |  | ||||| || |||||||||||||    
T  20356871 tgcatgagtttaat-tagctcttctaggaaagtggtgctggaggatgctagttgataaaggcgggttatggtatc 20356944  T

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Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 12214158 - 12214240
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    ||||||||||| |||  | |||||||||||||||||||||||| |||||||||||| ||  |||||||||||| |||||||||    
T  12214158 tgaaatttgtcctgtcctttcttccggtttactttctttcctttttcaaggcacctgcaggtataatttcttctattgaatct 12214240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 173 - 303
Target Start/End: Complemental strand, 28624501 - 28624371
Alignment:
Q  173 gtgaggattttaggaaaattgcttgggtcgactgggactctatttgttcaccaaaggtgtatggagggctgggggcgaggaagctgcgtgaatttaatat 272  Q
    ||||||||||||||||||||||||||||||| || |||| | |||||| |||||||| | | |||||| | || |  || | | |||||||||||||| |    
T  28624501 gtgaggattttaggaaaattgcttgggtcgattgagactttgtttgtttaccaaaggaggaaggagggttaggtgttagaaggttgcgtgaatttaattt 28624402  T
Q  273 tgcgtttttagggaattggtgttggaggatg 303  Q
    | | || |||||||| |||||||||||||||    
T  28624401 ttcattattagggaagtggtgttggaggatg 28624371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 53504511 - 53504576
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||||||||||||||||||||| ||||| || ||||||  |||||||||||| |||||||||    
T  53504511 tctcttccggtttactttctttcctttttcaaagctcctacaggtataatttcttctattgaatct 53504576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 462758 - 462805
Alignment:
Q  172 tgtgaggattttaggaaaattgcttgggtcgactgggactctatttgt 219  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||    
T  462758 tgtgaggattttaggaaaattgcttgggtggattgggactctatttgt 462805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 30827844 - 30827934
Alignment:
Q  65 ttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttattta 155  Q
    ||||||||||||||||  || ||| || ||||||||||||||||||||| ||| ||  ||  |||||||||||| || |||||||||||||    
T  30827844 ttgaaatttgtcatgtcttcgctttcgatttactttctttccttcttcagggcccccgcaggtataatttcttctatcgaatctttattta 30827934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 1231467 - 1231540
Alignment:
Q  44 ttcggaggtcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggc 117  Q
    |||||||| || || ||||| ||||||| |||||||| ||| ||||||||||||||||||||| | ||||||||    
T  1231467 ttcggagggcgtctgatactgttgaaatctgtcatgtcatcgcttccggtttactttctttcccttttcaaggc 1231540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 306
Target Start/End: Complemental strand, 34830103 - 34830023
Alignment:
Q  226 aaggtgtatggagggctgggggcgaggaagctgcgtgaatttaatattgcgtttttagggaattggtgttggaggatgttg 306  Q
    |||| |||||||||| |||||| ||||||| ||| ||||||||||| ||| || ||||| || ||||||||| ||||||||    
T  34830103 aaggagtatggagggttgggggtgaggaagttgcatgaatttaatagtgctttgttaggtaaatggtgttggcggatgttg 34830023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 305
Target Start/End: Complemental strand, 55367332 - 55367241
Alignment:
Q  213 tatttgttcaccaaaggtgtatggagggctgggggcgaggaagctgcgtgaatttaatattgcgtttttagggaattggtgttggaggatgtt 305  Q
    ||||||||||| ||||| |||||| ||| |||||| ||||||| ||   ||||||||| ||||||| ||||| || |||||||||||||||||    
T  55367332 tatttgttcacgaaaggagtatgg-gggttgggggtgaggaagttgaaggaatttaatcttgcgttgttaggaaaatggtgttggaggatgtt 55367241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 15243986 - 15244105
Alignment:
Q  29 aataaattcctgtccttcggaggtcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatata 128  Q
    ||||||||||| |||||||| || || ||  ||||| |||| | ||||||||  ||||||||  |||||||||||||||| ||||| || |||  |  ||    
T  15243986 aataaattcctttccttcggtggccgtctggtacttctgaagtctgtcatgtcctctcttccaatttactttctttcctttttcaatgcccctgtaggta 15244085  T
Q  129 taatttcttccattgaatct 148  Q
    |||||||||| |||||||||    
T  15244086 taatttcttctattgaatct 15244105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 25049774 - 25049825
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggc 117  Q
    |||| ||||||||||  ||||| |||||||||||||||||||||||||||||    
T  25049774 tgaagtttgtcatgtcttctctcccggtttactttctttccttcttcaaggc 25049825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 29807458 - 29807509
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggc 117  Q
    |||| ||||||||||| ||||||  |||||||||||||||||||||||||||    
T  29807458 tgaagtttgtcatgttttctcttttggtttactttctttccttcttcaaggc 29807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 19566274 - 19566184
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||| ||||||||  ||||| ||| |||||||| |||||||||||||||| ||  || ||||||||||||| || |||| | |||||||    
T  19566274 tgaaatatgtcatgtcctctctcccgatttactttatttccttcttcaaggctcccgcagatataatttcttctatcgaatttatatttaa 19566184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Complemental strand, 20115546 - 20115489
Alignment:
Q  278 ttttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagt 335  Q
    |||||||||| |||||||||||||||||| | || |||| |||||| |||||||||||    
T  20115546 ttttagggaaatggtgttggaggatgttggttgagaaggaagggttgtggtatcgagt 20115489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 32517935 - 32517874
Alignment:
Q  87 ttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||||||||||||||||| ||||| || ||| ||  |||||||||||| |||||||||    
T  32517935 ttccggtttactttctttcctttttcaaagcccctgcaagtataatttcttctattgaatct 32517874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 298768 - 298848
Alignment:
Q  68 aaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||||||||  || || |||||||| ||||||||||| |||||||| || |||  |||||| |||||| ||||||||    
T  298768 aaatttgtcatgtcgtcgctcccggtttaatttctttcctttttcaaggctcccacaggtataatctcttcccttgaatct 298848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 265 - 353
Target Start/End: Complemental strand, 30188461 - 30188373
Alignment:
Q  265 tttaatattgcgtttttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacgg 353  Q
    |||||| | ||||| ||||| || ||||||||| | |||||| | ||||||| ||| ||||||||||||||| | |||||||| |||||    
T  30188461 tttaatgtagcgttgttaggaaagtggtgttggcgtatgttggtggataaggaaggattatggtatcgagtcttaaaggctagatacgg 30188373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 54623281 - 54623313
Alignment:
Q  371 aaaatccttatttgatgttttaaagattacaaa 403  Q
    |||||||||||||||||||||||||||||||||    
T  54623281 aaaatccttatttgatgttttaaagattacaaa 54623313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 462647 - 462737
Alignment:
Q  60 tacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatcttt 150  Q
    |||| ||||||| |||| |||  || ||| ||||||||||||||||||||||||||||  |  ||  |||||||||||||||  |||||||    
T  462647 tactcttgaaatctgtcttgtcttcgctttcggtttactttctttccttcttcaaggccgccgcaggtataatttcttccatcaaatcttt 462737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 32876778 - 32876816
Alignment:
Q  368 gacaaaatccttatttgatgttttaaagattacaaacat 406  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  32876778 gacaaaatccttattcaatgttttaaagattacaaacat 32876816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 39051039 - 39051101
Alignment:
Q  86 cttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||| |||||||||||||||||| ||||| || || |||  |||||||||||| |||||||||    
T  39051039 cttctggtttactttctttcctttttcaaagctcccacaagtataatttcttctattgaatct 39051101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 15028763 - 15028828
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    ||||||||||| |||||||||||||||||||| || ||  ||| ||| ||||| || |||||||||    
T  15028763 tctcttccggtctactttctttccttcttcaaagctcccgcatgtatcatttcctctattgaatct 15028828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 42830021 - 42830086
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||||||||||||||||||||| ||||  || ||| ||  |||||||||||| || ||||||    
T  42830021 tctcttccggtttactttctttcctttttcagagcccctgcaggtataatttcttctatcgaatct 42830086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 287; Significance: 1e-160; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 362 - 859
Target Start/End: Original strand, 412469 - 412952
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||    
T  412469 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgttttg-tgagaatttgtttc 412567  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||  |||||        
T  412568 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcatgactgatt---- 412663  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
            ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  412664 --------atgtctattgggccataggaaaagctttaagcccatttggaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 412749  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||| | |||||| |||||| |    
T  412750 catgacatcactaaagcaaaaggacatgacatcatcagaagtgggcagcaagttatacagctcattacagctggttatctcatgtgcaagcaaagcaata 412849  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatca 856  Q
    ||| |||||||| ||  ||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||    
T  412850 gtgctttcaaagtcagacaaatcagaaagaacattatgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 412949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 362 - 886
Target Start/End: Complemental strand, 95450 - 94935
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  95450 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 95351  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| ||| |||||||||||| ||| |||||||||    
T  95350 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgctcagcaagaaagcttggctgattatgt 95251  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    ||             |||||||||||||||||||||||||||||||||||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  95250 tt-----------acttgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 95168  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  95167 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaaca 95068  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  95067 gtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 94968  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  94967 aaaacgtgtccaacagctctattttctcccttg 94935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 362 - 886
Target Start/End: Complemental strand, 104891 - 104376
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  104891 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 104792  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| ||| |||||||||||| ||| |||||||||    
T  104791 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgctcagcaagaaagcttggctgattatgt 104692  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    ||             |||||||||||||||||||||||||||||||||||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  104691 tt-----------acttgggccataagaaaagctttaagcccatttggaaaagtaaagcccattaa------atggataagatcacatggcttacttaag 104609  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||| ||||| |||||||| ||||||||    
T  104608 catgacatcactagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcatcacagctggttatctcatgcgcaagcaaagcaaca 104509  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||| ||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||     
T  104508 gtgctttctaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaattgagactttggacagctatca 104409  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  104408 aaaacgtgtccaacagctctattttctcccttg 104376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 361 - 886
Target Start/End: Complemental strand, 7790094 - 7789582
Alignment:
Q  361 gtgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgttt 460  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  7790094 gtgttgagacaaaatccttaattgatgttttaaagattacaaacat--tatatttatttaatcttgttatctactaattcgttttg-tgagaatttgttt 7789998  T
Q  461 catgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatg 560  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||| |||  |||||||    
T  7789997 catgagaatgaaatgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcttggcagattatg 7789898  T
Q  561 ttttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaa 659  Q
    ||            ||||||||||||||||||| |||||||||||||||||||| ||||||||||||      |||| |||||||||||| |||| ||||    
T  7789897 tt------------tattgggccataagaaaagttttaagcccatttggaaaagaaaagcccattaa------atggataagatcacatggcttacttaa 7789816  T
Q  660 gcatgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaac 758  Q
    |||||| ||||| | |||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||| ||||| |||||||| |||||||    
T  7789815 gcatgacatcacaagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaac 7789716  T
Q  759 agtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc 855  Q
    |||| |||||||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||  || |||||||||| |||||    
T  7789715 agtgctttcaaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaaaagatactttggacagctatc 7789616  T
Q  856 -aaaacgcgtc--acagctccattttctcccttg 886  Q
     |||||| |||  ||||||| |||||||||||||    
T  7789615 aaaaacgtgtccaacagctctattttctcccttg 7789582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 362 - 558
Target Start/End: Original strand, 20709831 - 20710027
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  20709831 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatctactaattcgtttttgtgagaatttgtttc 20709930  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgatta 558  Q
    ||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  20709931 atgagaatgaactgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagtgagcaagtctgcacagcaagaaagcatggttgatta 20710027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 1010854 - 1010748
Alignment:
Q  50 ggtcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctt 149  Q
    |||||||| || |||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||  || ||||||||||||| || |||||||    
T  1010854 ggtcgcctgatccttttgaaatctgtcatgtcatctcttccggtttactttctttccttcttcaaggcccccgcaaatataatttcttctatcgaatctt 1010755  T
Q  150 tatttaa 156  Q
    |||||||    
T  1010754 tatttaa 1010748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 362 - 470
Target Start/End: Original strand, 15833168 - 15833275
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||||||| | || |||||||| ||||  | ||| |||| ||||    
T  15833168 tgttgagacaaaatctttatttgatgtttcaaagattacaaacatgttatctttatttaatcttatcatctactaatttgtttggc-gaggatttatttc 15833266  T
Q  462 atgagaatg 470  Q
    |||||||||    
T  15833267 atgagaatg 15833275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 15014358 - 15014285
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||| ||||||||||||||||||||||||||||  | |||| |||||||||||||||| |||||||||||||    
T  15014358 tctcttgcggtttactttctttccttcttcaaggctgccacatgtataatttcttccattcaatctttatttaa 15014285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 29978087 - 29977998
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttattta 155  Q
    |||||| |||||| | |||||||  | |||||||||||| |||||||||| |||| |||| |||||||||||| ||||||||||||||||    
T  29978087 tgaaatatgtcatatcatctcttatgatttactttcttttcttcttcaagacacccacatgtataatttcttctattgaatctttattta 29977998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 39920728 - 39920663
Alignment:
Q  82 atctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatc 147  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||| ||||| || ||||||||    
T  39920728 atctcttccggtttactttctttccttcttcaaggcacctacaggtatcatttcctctattgaatc 39920663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 8445670 - 8445597
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||||| |||||||||||||||||||| || ||| ||  ||| |||||||||||||||||| |||||||    
T  8445670 tctcttccggtctactttctttccttcttcaaagctccttcaggtatcatttcttccattgaatctatatttaa 8445597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 25720044 - 25720105
Alignment:
Q  87 ttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||||||||||||||||| ||||| || |||||| ||||||||||||| |||||||||    
T  25720044 ttccggtttactttctttcctttttcaaagcccctacaaatataatttcttctattgaatct 25720105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 8306032 - 8305968
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatc 147  Q
    |||||||||||||| |||||||||||||||||||||||| ||  |||||||||||| || |||||    
T  8306032 tctcttccggtttattttctttccttcttcaaggcacctgcaggtataatttcttctatcgaatc 8305968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 25320731 - 25320634
Alignment:
Q  20 tcttgaaacaataaattcctgtccttcggaggtcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggc 117  Q
    ||||| || ||||| ||| |||| |||||||| || ||  ||||  ||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||    
T  25320731 tcttggaataataagttcttgtctttcggagggcgtctggtactgctgaaatttgtcctgtcatcgcttccggtttactttctttcctttttcaaggc 25320634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 13447717 - 13447662
Alignment:
Q  62 cttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggc 117  Q
    |||||||| |||||| |||| ||||||| ||| |||||||||||||||||||||||    
T  13447717 cttttgaagtttgtcttgttctctcttctggtctactttctttccttcttcaaggc 13447662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 31462297 - 31462190
Alignment:
Q  41 tccttcggaggtcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttcca 140  Q
    |||||||||||||| ||  | ||| | |||| ||||||||  ||||||||||| |||||||||| ||| ||||| ||  || ||| |||||||||||| |    
T  31462297 tccttcggaggtcgtctggttcttctaaaatctgtcatgtcctctcttccggtctactttctttactttttcaaagcttctgcatgtataatttcttcta 31462198  T
Q  141 ttgaatct 148  Q
    ||||||||    
T  31462197 ttgaatct 31462190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 24425598 - 24425564
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggc 117  Q
    |||||||||||||||||||||||||||||||||||    
T  24425598 tctcttccggtttactttctttccttcttcaaggc 24425564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 25108945 - 25109031
Alignment:
Q  62 cttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    ||||||||||   ||||||  |||||||||||||||||||||||||| ||||| || ||| ||  |||||||||||| || ||||||    
T  25108945 cttttgaaatcattcatgtcctctcttccggtttactttctttcctttttcaaagcccctgcaggtataatttcttctatcgaatct 25109031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 42451906 - 42451988
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||| |||| |||  ||||| |||||||||||||||||||| ||||| || ||| ||  |||||||||||| |||||||||    
T  42451906 tgaaatctgtcttgtcctctctaccggtttactttctttcctttttcaaagctcctgcaggtataatttcttctattgaatct 42451988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 21312453 - 21312518
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||| ||||||| ||||||||||| |||||||| ||| ||  |||||||||||| |||||||||    
T  21312453 tctctttcggtttattttctttcctttttcaaggcgcctgcaggtataatttcttctattgaatct 21312518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 242 - 335
Target Start/End: Complemental strand, 36025215 - 36025122
Alignment:
Q  242 tgggggcgaggaagctgcgtgaatttaatattgcgtttttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagt 335  Q
    |||||| |||| || || |||||||||||||||| || |||||  | ||||||||| |||||||| | ||||  ||||||||||||||| ||||    
T  36025215 tgggggtgaggcagttgagtgaatttaatattgctttattaggataatggtgttggcggatgttggtggatagaggagggttatggtatagagt 36025122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 1682168 - 1682220
Alignment:
Q  65 ttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggc 117  Q
    ||||||| ||||||||  ||||| ||| |||||||||||||||||||||||||    
T  1682168 ttgaaatctgtcatgtcctctctgccgatttactttctttccttcttcaaggc 1682220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 3774917 - 3774829
Alignment:
Q  50 ggtcgcctcatacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttc 138  Q
    ||||| || ||||| |||||||||||| |||  || ||||| ||||||||||||||||| |||||||| ||  ||  ||||||||||||    
T  3774917 ggtcgtctgatactattgaaatttgtcctgtcctcgcttccagtttactttctttcctttttcaaggctcccgcaggtataatttcttc 3774829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 5252608 - 5252660
Alignment:
Q  62 cttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaa 114  Q
    |||||||| ||||||||||  |||||| || ||||||||||||||||||||||    
T  5252608 cttttgaagtttgtcatgtattctctttcgatttactttctttccttcttcaa 5252660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 9741566 - 9741510
Alignment:
Q  92 gtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    ||||| |||||||||||||||||||| || |||| |||||| |||||||| ||||||    
T  9741566 gtttattttctttccttcttcaaggcccccacatgtataatctcttccatagaatct 9741510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 23448220 - 23448173
Alignment:
Q  89 ccggtttactttctttccttcttcaaggcacctacatatataatttct 136  Q
    |||||||||||||||||||| |||||||| ||| ||| ||||||||||    
T  23448220 ccggtttactttctttcctttttcaaggctcctgcatgtataatttct 23448173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 280 - 358
Target Start/End: Complemental strand, 15014148 - 15014070
Alignment:
Q  280 ttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggagg 358  Q
    |||||||| ||||||||||| |||||  |||||||||  || |||||||||  |||  | |||||||||||||||||||    
T  15014148 ttagggaagtggtgttggagaatgttagtagataaggagggtttatggtataaagttttaaaggctaggtacggggagg 15014070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 442380 - 442441
Alignment:
Q  289 tggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggta 350  Q
    ||||| ||||||||| |  |||||||||  |||||||||||||||||| | |||||||||||    
T  442380 tggtgctggaggatgctagtagataaggaggggttatggtatcgagtcttaaaggctaggta 442441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 16683020 - 16683065
Alignment:
Q  175 gaggattttaggaaaattgcttgggtcgactgggactctatttgtt 220  Q
    |||||||||||||||||| ||||||| || ||||||||| ||||||    
T  16683020 gaggattttaggaaaatttcttgggtggattgggactctgtttgtt 16683065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 23942927 - 23942874
Alignment:
Q  100 tctttccttcttcaaggcacctacatatataatttcttccattgaatctttatt 153  Q
    ||||||||||||||| || ||  ||| |||||| ||||||||||||||||||||    
T  23942927 tctttccttcttcaaagctccatcatgtataatctcttccattgaatctttatt 23942874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 247; Significance: 1e-136; HSPs: 2)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 362 - 886
Target Start/End: Original strand, 2706 - 3217
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    |||||||||||||||| || |||||||||||||||||||||||||  |||||||||||||||||||||| || |||||||||||  ||||||||||||||    
T  2706 tgttgagacaaaatccataattgatgttttaaagattacaaacat--tatatttatttaatcttgttatctaataattcgttttg-tgagaatttgtttc 2802  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaagtgaacaagtttgcacagcaagaaagcatggttgattatgt 561  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| |||||||||||||||| |||  ||||||||    
T  2803 atgagaatgaaatgagaacgttctggcgaaaacgatgaaaatggaacagtacatcaaaagcgaacaagtctgcacagcaagaaagcttggcagattatgt 2902  T
Q  562 tttaataaatgtctattgggccataagaaaagctttaagcccatttggaaaag-aaagcccattaatatctcatggttaagatcacatgacttatttaag 660  Q
    |            ||||||||||||||||||| |||||||||||||||||||| ||||||||||||      |||| |||||||||||| |||| |||||    
T  2903 t------------tattgggccataagaaaagttttaagcccatttggaaaagaaaagcccattaa------atggataagatcacatggcttacttaag 2984  T
Q  661 catgatatcactaaagcaaaaggacatgacatcatcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagc-aagcaaca 759  Q
    ||||| ||||| | |||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  2985 catgacatcacaagagcaaaaggacatgacatcatcagaagtgggctgcaagttatacagctcattacagctggttatctcatgcgcaagcaaagcaaca 3084  T
Q  760 gtgttttcaaagccaagcaaatcagaaagaacattatgag-acgttctggctatttt-aagaag-aaagagaaatcaattgagactttggacaactatc- 855  Q
    ||| |||||||| || ||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||  || |||||||||| |||||     
T  3085 gtgctttcaaagtcaggcaaatcagaaagaacattctgagaacgttctggctattttaaagaagaaaagagaaatcaaaagatactttggacagctatca 3184  T
Q  856 aaaacgcgtc--acagctccattttctcccttg 886  Q
    |||||| |||  ||||||| |||||||||||||    
T  3185 aaaacgtgtccaacagctctattttctcccttg 3217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 361 - 500
Target Start/End: Original strand, 1819 - 1955
Alignment:
Q  361 gtgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgttt 460  Q
    |||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||  |||||||||||||    
T  1819 gtgttgagacaaaatccttaattgatgttttaaagattacaaacat--tatatttatttaatcttgttatctactaattcgttttg-tgagaatttgttt 1915  T
Q  461 catgagaatgaactgagaacgttctggcaaaaacgatgaa 500  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  1916 catgagaatgaaatgagaacgttctggcgaaaacgatgaa 1955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 4e-56; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 409 - 859
Target Start/End: Complemental strand, 15810973 - 15810514
Alignment:
Q  409 tatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttcatgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaat 508  Q
    |||||||||||||||||||||| ||||||||||||||  |||||       ||||||||||| |||||||||||||||||| | |||| ||| || |||     
T  15810973 tatatttatttaatcttgttatctactaattcgttttg-tgaga-------tcatgagaatgtactgagaacgttctggcatatacgaagaagataaaac 15810882  T
Q  509 agtacatcaaaagtgaacaagtttgca-cagcaagaaagcatggttgattatgttttaataaatgtctattgggccataagaaaagctttaagcccattt 607  Q
    ||||||||||||||||||||||||||| || |||| |||| |||  ||||||  ||| | | |||||| |||||||||||||||||  || | |||||||    
T  15810881 agtacatcaaaagtgaacaagtttgcagcaacaagtaagcctggaagattattatttgaaagatgtctcttgggccataagaaaagaattcaacccattt 15810782  T
Q  608 ggaaaagaaag-cccattaa--------tat----ctcatggttaagatcacatgacttatttaagcatgatatcactaaagcaaaaggacatgacatca 694  Q
    |||    |||| ||||| ||        |||    ||||||| ||||| |||||| |||||| || | ||| |||||||||||||||||||||||||| |    
T  15810781 ggatgcaaaaggcccataaagaataaaatatttcactcatggataagagcacatggcttattaaaacctgacatcactaaagcaaaaggacatgacataa 15810682  T
Q  695 tcagcagtgggcaacaagttatacagctcattacagctggttctctcacgcgcaagcaagcaacagtgttttcaaagccaagcaaatcagaaagaacatt 794  Q
    |||| | || ||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||    |||||  | |||||||||| | ||||||    
T  15810681 tcagaattgagcaacaagtaaaacagctcattacagctggttctctcactcgcaagcaagcaacagtgcaagcaaagttatgcaaatcagacataacatt 15810582  T
Q  795 atgaga-cgttctggcta-ttttaagaagaaaga-gaaatcaattgagactttggacaactatcaaaa 859  Q
     ||||| | ||||| ||| ||||||||||||| | ||||||||||  ||||||||||| |||||||||    
T  15810581 ctgagatcattctgtctatttttaagaagaaaaatgaaatcaattaggactttggacagctatcaaaa 15810514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 36984060 - 36983970
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||| |||||||  ||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| ||||||| |||||||||    
T  36984060 tgaaatctgtcatgacatctcttccggtttactttcttttcttcttcaaggcacctgcatgtataatttcttctattgaatatttatttaa 36983970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 50817219 - 50817315
Alignment:
Q  60 tacttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||| ||||||||||||||||  || |||||||||||||||||||||||||||||||| ||  ||  ||||||||||||||| ||||||||||||||    
T  50817219 tactcttgaaatttgtcatgtcttcgcttccggtttactttctttccttcttcaaggcccccgcaggtataatttcttccatcgaatctttatttaa 50817315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 15174552 - 15174642
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||||||||| || ||| ||||||||||||||||||||||||||||| || |||  |||||||||||| || ||||||||||||||    
T  15174552 tgaaatttgtcatgtcatgtctaccggtttactttctttccttcttcaaggcccccacaggtataatttcttctatcgaatctttatttaa 15174642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 362 - 520
Target Start/End: Complemental strand, 41001425 - 41001268
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatattatatttatttaatcttgttatatactaattcgtttttctgagaatttgtttc 461  Q
    ||||| |||||||| |||||||||||||||||||||||||| |||| |  |||||||| ||||| || | || |||||   |||| ||||||||| ||||    
T  41001425 tgttgcgacaaaattcttatttgatgttttaaagattacaatcataatgaatttattttatcttattgtctattaatt-tattttgtgagaatttatttc 41001327  T
Q  462 atgagaatgaactgagaacgttctggcaaaaacgatgaaaatgaaatagtacatcaaaa 520  Q
    ||||||||||| ||||||| |||||||| | ||||   |||  ||||||||||||||||    
T  41001326 atgagaatgaattgagaaccttctggcatatacgaaacaaacaaaatagtacatcaaaa 41001268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 43914230 - 43914142
Alignment:
Q  62 cttttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatcttt 150  Q
    |||||||||| | || ||| || | ||||||||||||||||||||||||||||||| || |||  ||||||||||||||||||||||||    
T  43914230 cttttgaaatatatcctgtcatatgttccggtttactttctttccttcttcaaggcccccacaggtataatttcttccattgaatcttt 43914142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 280 - 358
Target Start/End: Complemental strand, 43914003 - 43913925
Alignment:
Q  280 ttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggagg 358  Q
    |||||||| ||||||||| | |||||  ||||||||| ||||||||| ||||||||| | |||||||||||||||||||    
T  43914003 ttagggaagtggtgttggcgtatgttagtagataaggaagggttatgatatcgagtcttaaaggctaggtacggggagg 43913925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 362 - 410
Target Start/End: Complemental strand, 15811316 - 15811268
Alignment:
Q  362 tgttgagacaaaatccttatttgatgttttaaagattacaaacatatta 410  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  15811316 tgttgagacaaaatccttattttatgttttaaagattacaaatatatta 15811268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 33569734 - 33569652
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    ||||| ||||| |||  |||||||||||||||||||||||||| ||||| || ||| ||  |||||||||||| |||||||||    
T  33569734 tgaaagttgtcttgtcctctcttccggtttactttctttcctttttcaaagcccctgcaagtataatttcttctattgaatct 33569652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 34548044 - 34548117
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||||| |||||||||||||||||||| || ||  ||  ||| |||||||| |||||||||||||||||    
T  34548044 tctcttccggtctactttctttccttcttcaaagctcccgcaggtatcatttcttctattgaatctttatttaa 34548117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 48241173 - 48241246
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||||||||||||||||||||||| ||||| || ||| ||  ||| |||||||| ||||||||| |||||||    
T  48241173 tctcttccggtttactttctttcctttttcaaagcccctgcaggtattatttcttctattgaatctatatttaa 48241246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 42910071 - 42910159
Alignment:
Q  68 aaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||| |||||||| |||| |||||||||| ||||||||||||||||||||  | ||   |||||||| || ||| ||||||||||||||    
T  42910071 aaatctgtcatgtcatctgttccggtttattttctttccttcttcaaggcctccacgggtataatttttttcatagaatctttatttaa 42910159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 371 - 406
Target Start/End: Original strand, 25880968 - 25881003
Alignment:
Q  371 aaaatccttatttgatgttttaaagattacaaacat 406  Q
    ||||||||||||||||||||||||||||||||||||    
T  25880968 aaaatccttatttgatgttttaaagattacaaacat 25881003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 3856343 - 3856273
Alignment:
Q  289 tggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggaggt 359  Q
    ||||||||| | |||||  | |||||||  |||||||||||||||||| | ||||||||||||||||||||    
T  3856343 tggtgttggcgtatgttagtggataaggaggggttatggtatcgagtcttaaaggctaggtacggggaggt 3856273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 32304042 - 32303968
Alignment:
Q  74 gtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    |||||||  |||||||||||||||||||||||||| ||||| || | | ||  |||||||||||| |||||||||    
T  32304042 gtcatgtcctctcttccggtttactttctttcctttttcaaagcccatgcaggtataatttcttctattgaatct 32303968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 306
Target Start/End: Complemental strand, 751582 - 751449
Alignment:
Q  173 gtgaggattttaggaaaattgcttgggtcgactgggactctatttgttcaccaaaggtgtatggagggctgggggcgaggaagctgcgtgaatttaatat 272  Q
    |||||||||||||||||||||||||| |  | ||||| || |||||| | ||||||| | | |||||| |||||| ||||| | || | |  ||||||||    
T  751582 gtgaggattttaggaaaattgcttggataaattgggagtcgatttgtactccaaaggaggacggagggttgggggtgaggagggtgggagcttttaatat 751483  T
Q  273 tgcgtttttagggaattggtgttggaggatgttg 306  Q
     |||||  | ||||| ||||| ||||||||||||    
T  751482 ggcgttggtggggaagtggtgctggaggatgttg 751449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 262 - 358
Target Start/End: Original strand, 42910234 - 42910330
Alignment:
Q  262 gaatttaatattgcgtttttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggagg 358  Q
    ||||||||| |||| ||  ||||||| ||||| ||| | |||||  | |||| || ||||||||||||||||||| | || ||||||||||||||||    
T  42910234 gaatttaatgttgctttactagggaagtggtgctggcgtatgttagtggatacggaagggttatggtatcgagtcttaaatgctaggtacggggagg 42910330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 17540265 - 17540312
Alignment:
Q  173 gtgaggattttaggaaaattgcttgggtcgactgggactctatttgtt 220  Q
    ||||||||||||||||||||| |||||| || ||||||||| ||||||    
T  17540265 gtgaggattttaggaaaattgtttgggtggattgggactctgtttgtt 17540312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 31912983 - 31912940
Alignment:
Q  71 tttgtcatgttatctcttccggtttactttctttccttcttcaa 114  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||    
T  31912983 tttgtcttgtcatctcttccggtctactttctttccttcttcaa 31912940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 14206184 - 14206246
Alignment:
Q  86 cttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatct 148  Q
    ||||||||||||||||||||||| ||||| || ||| ||| ||| |||||||| ||| |||||    
T  14206184 cttccggtttactttctttcctttttcaaagcccctgcatgtattatttcttctattcaatct 14206246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 20987829 - 20987764
Alignment:
Q  262 gaatttaatattgcgtttttagggaattggtgttggaggatgttgttagataagggagggttatgg 327  Q
    |||||||||| |||||| |||||||| ||||| |||||||||||| | ||||  | ||||||||||    
T  20987829 gaatttaatactgcgttgttagggaaatggtgctggaggatgttggtggatagagaagggttatgg 20987764  T

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Target: scaffold0309 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 551 - 639
Alignment:
Q  66 tgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttattt 154  Q
    |||||| |||| ||| |||||| ||||||||||||||||||||||||||||| || |||  ||||||||| ||||| ||||||||||||    
T  551 tgaaatctgtcctgtcatctctaccggtttactttctttccttcttcaaggcccccacaggtataatttcatccatcgaatctttattt 639  T

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Target: scaffold0155 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 33022 - 32949
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||| | ||||||||||||||||||||||||||||||||| ||||||||| || ||  |||||||||||||    
T  33022 tctcttctgatttactttctttccttcttcaaggcacctacatgtataatttcctctatcaaatctttatttaa 32949  T

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Target: scaffold0155; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 359
Target Start/End: Complemental strand, 32839 - 32742
Alignment:
Q  262 gaatttaatattgcgtttttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggaggt 359  Q
    ||||||||| | || || |||||||| |||||||||||| ||||| | ||||||| |||||| || ||||| ||  | ||||||||||| ||||||||    
T  32839 gaatttaatttagctttattagggaagtggtgttggaggttgttggttgataaggaagggttgtgatatcgtgttttaaaggctaggtatggggaggt 32742  T

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Target: scaffold0533 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 806 - 725
Alignment:
Q  75 tcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||| ||||||||||||||||||||||| |||||||||||  || |||  | |||||||||| || ||||||||||||||    
T  806 tcatgtcatctcttccggtttactttcttttcttcttcaaggtccccacaagtttaatttcttctatcgaatctttatttaa 725  T

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Target: scaffold0533; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 358
Target Start/End: Complemental strand, 706 - 522
Alignment:
Q  173 gtgaggattttaggaaaattgcttgggtcgactgggactctatttgttcaccaaaggtgtatggagggctgggggcgaggaagctgcgtgaatttaatat 272  Q
    |||||||||||||||||||||||||||| || || |||||| ||||||  || |||| | | || ||| | || |  | ||||  | | ||||||||| |    
T  706 gtgaggattttaggaaaattgcttgggt-gattgagactctgtttgtttgccgaaggagaagggtgggttaggcgtcaagaagtcgagggaatttaatgt 608  T
Q  273 tgcgtttttagggaattggtgttggaggatgttgttagataagggagggttatggtatcgagtccttaaggctaggtacggggagg 358  Q
     || || || ||||| ||||||||| | |||||| | |||||||  || ||||||||||||||| | |||||||||||||| ||||    
T  607 agctttgttggggaagtggtgttggcgtatgttggttgataaggagggtttatggtatcgagtcttaaaggctaggtacggagagg 522  T

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Target: scaffold0693 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0693
Description:

Target: scaffold0693; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 373 - 285
Alignment:
Q  68 aaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||||| |||  ||||||| |||||||||||||||||| ||||| || ||| ||  | |||||||||| ||||||||| |||||||    
T  373 aaatttgtcttgtcctctcttctggtttactttctttcctttttcaaagcccctgcaggtctaatttcttctattgaatctatatttaa 285  T

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Target: scaffold0247 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 371 - 406
Target Start/End: Original strand, 23562 - 23597
Alignment:
Q  371 aaaatccttatttgatgttttaaagattacaaacat 406  Q
    ||||||||||||||||||||||||||||||||||||    
T  23562 aaaatccttatttgatgttttaaagattacaaacat 23597  T

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Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 6064 - 5973
Alignment:
Q  65 ttgaaatttgtcatgttatctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    ||||||| || | ||| ||||||||||| ||| |||||||||||||||||||| || | |  |||||||||||| ||  |||||||||||||    
T  6064 ttgaaatctgacctgtcatctcttccggattattttctttccttcttcaaggcccccataggtataatttcttctatcaaatctttatttaa 5973  T

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Target: scaffold0021 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 406
Target Start/End: Original strand, 176416 - 176454
Alignment:
Q  368 gacaaaatccttatttgatgttttaaagattacaaacat 406  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  176416 gacaaaatccttattagatgttttaaagattacaaacat 176454  T

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Target: scaffold0300 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 8204 - 8277
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctacatatataatttcttccattgaatctttatttaa 156  Q
    |||||||| || |||||||||||||||||||| || |   ||| ||| |||||||||||||||||| |||||||    
T  8204 tctcttccagtctactttctttccttcttcaacgctctcgcatgtatcatttcttccattgaatctatatttaa 8277  T

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Target: scaffold0153 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 23609 - 23650
Alignment:
Q  83 tctcttccggtttactttctttccttcttcaaggcacctaca 124  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  23609 tctctcccggtttactttctttccttcttcaaggcccctaca 23650  T

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Target: scaffold0101 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 368 - 406
Target Start/End: Complemental strand, 43124 - 43086
Alignment:
Q  368 gacaaaatccttatttgatgttttaaagattacaaacat 406  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  43124 gacaaaatttttatttgatgttttaaagattacaaacat 43086  T

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Target: scaffold0281 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 406
Target Start/End: Original strand, 23137 - 23186
Alignment:
Q  359 ttgtgttgaga-caaaatcc-ttatttgatgttttaaagattacaaacat 406  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||||||||    
T  23137 ttgtgttgagaacaaaatccattatttgatgttttaaagatcacaaacat 23186  T

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