View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5873-Insertion-2 (Length: 873)

Name: NF5873-Insertion-2
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5873-Insertion-2
NF5873-Insertion-2
[»] chr1 (18 HSPs)
chr1 (9-826)||(47319776-47320613)
chr1 (57-302)||(47316359-47316605)
chr1 (48-147)||(47314599-47314700)
chr1 (81-201)||(47319635-47319755)
chr1 (76-279)||(47316120-47316323)
chr1 (132-201)||(47314437-47314506)
chr1 (706-788)||(47316892-47316978)
chr1 (196-263)||(47314698-47314765)
chr1 (339-404)||(47316597-47316662)
chr1 (160-280)||(47307046-47307166)
chr1 (703-745)||(47311515-47311557)
chr1 (834-867)||(20291280-20291313)
chr1 (834-867)||(20302198-20302231)
chr1 (834-867)||(6822775-6822808)
chr1 (834-867)||(13761577-13761610)
chr1 (834-867)||(47177078-47177111)
chr1 (834-867)||(47179428-47179461)
chr1 (834-867)||(51752104-51752137)
[»] chr7 (3 HSPs)
chr7 (833-867)||(3878321-3878355)
chr7 (833-867)||(40837228-40837262)
chr7 (834-867)||(1047470-1047503)
[»] chr6 (5 HSPs)
chr6 (833-867)||(14507683-14507717)
chr6 (833-867)||(26068849-26068883)
chr6 (832-865)||(29755248-29755281)
chr6 (834-867)||(33308685-33308718)
chr6 (834-867)||(33310954-33310987)
[»] chr3 (8 HSPs)
chr3 (835-867)||(5191374-5191406)
chr3 (833-867)||(6066258-6066292)
chr3 (833-867)||(35777162-35777196)
chr3 (834-867)||(7606930-7606963)
chr3 (834-867)||(25388618-25388651)
chr3 (834-867)||(38210067-38210100)
chr3 (834-867)||(50493676-50493709)
chr3 (834-867)||(53896721-53896754)
[»] chr2 (2 HSPs)
chr2 (831-867)||(45332642-45332678)
chr2 (838-867)||(27104519-27104548)
[»] chr4 (13 HSPs)
chr4 (832-867)||(11434767-11434802)
chr4 (836-867)||(51015042-51015073)
chr4 (833-867)||(7941132-7941166)
chr4 (833-867)||(24888589-24888623)
chr4 (833-867)||(37089881-37089915)
chr4 (834-867)||(3825079-3825112)
chr4 (834-863)||(8528918-8528947)
chr4 (834-867)||(9177002-9177035)
chr4 (834-867)||(16932327-16932360)
chr4 (834-867)||(16934681-16934714)
chr4 (834-867)||(22780919-22780952)
chr4 (834-867)||(22783284-22783317)
chr4 (834-867)||(38408993-38409026)
[»] chr8 (3 HSPs)
chr8 (833-867)||(18810482-18810516)
chr8 (834-867)||(43079347-43079380)
chr8 (834-867)||(43081722-43081755)
[»] scaffold0127 (1 HSPs)
scaffold0127 (834-867)||(13021-13054)
[»] scaffold0068 (1 HSPs)
scaffold0068 (834-867)||(28941-28974)
[»] scaffold0025 (1 HSPs)
scaffold0025 (838-867)||(69800-69829)
[»] chr5 (6 HSPs)
chr5 (834-867)||(2174680-2174713)
chr5 (838-867)||(4236374-4236403)
chr5 (834-867)||(21684936-21684969)
chr5 (834-867)||(25921959-25921992)
chr5 (834-867)||(31179900-31179933)
chr5 (834-867)||(34479939-34479972)


Alignment Details
Target: chr1 (Bit Score: 651; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 9 - 826
Target Start/End: Original strand, 47319776 - 47320613
Alignment:
Q  9 cttgccaccaggagatgaaatcccacttctattcccaacgtcgtttgcaacagcagttaaagttgcatttccagataagatggaaaagtatgatgaattc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47319776 cttgccaccaggagatgaaatcccacttctattcccaacgtcgtttgcaacagcagttaaagttgcatttccatataagatggaaaagtatgatgaattc 47319875  T
Q  109 ttgaaactcgtagttgattacaatgccaaaagaattgatatgagagttttcaaagaaggactgatggagttgtttaaagaccataaagatttacttttgg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47319876 ttgaaactcgtagttgattacaatgccaaaagaattgatatgagagttttcaaagaaggactgatggagttgtttaaagaccataaagatttacttttgg 47319975  T
Q  209 gaatcaacacttggttgccagagggacacaaaatctcacttccattggatggtgatgaacaacaaggtgatgatggattagagttgaaatatgaacttca 308  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47319976 gactcaacacttggttgccagagggacacaaaatctcacttccattggatggtgatgaacaacaaggtgatgatggattagagttgaaatatgaacttca 47320075  T
Q  309 agttgatgaagcggca------ctcaaagatgaagagaaagatgacgaacaataacaagtttgactacaatcctgcatgtagcaattcctagtttgatct 402  Q
    ||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47320076 agttgatgaagcggcagcggcactcaaagatgaagagaaagatgacgaacaataacaagtttgactacaatcctgcatgtagcaattcctagtttgatct 47320175  T
Q  403 ---------------------atctgttatgtgtcaatttcacagtannnnnnnnnncttccattgtatactttgtactttgttgagtgcgaattcttta 481  Q
                         ||||||||||||||||||||||||||          |||||||||||||||||||       |||||||||||||||||    
T  47320176 ttaaaattcctagtttgatctatctgttatgtgtcaatttcacagtattttttttttcttccattgtatactttgt-------tgagtgcgaattcttta 47320268  T
Q  482 aactataca-tttacatcaagtgcatagagattgaatcagatggtattttcgtagcacaactcatcttgaaattttcgatctttctgtctttacataata 580  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||    
T  47320269 aactatacactttacatcaagtgcatagagattgaatcagatggtattttcatagcacaactcatcttgaaattttcgatctttctgtcttaa-ataata 47320367  T
Q  581 caagaaagatgtttataattttcactataagatttggaaacagaatgaatcacattcaatagttgttaaaaaatggatatgattggttgacctgatacct 680  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47320368 caggaaagatgtttataattttcactataagatttggaaacagaatgaatcacattcaatagttgttaaaaaatggatatgattggttgacctgatacct 47320467  T
Q  681 acagcaagtagtgtgtttacaacaagtacgtagaattgtatcaattgatattcatagcacaactcccatataagtacaaaaaagttgcttatccagaaat 780  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  47320468 acagcaagtagtgtgtatacaacaagtacgtagaattgtatcaattgatattcatagcacaactcccatttaagtacaaaaaagttgcttaaccagaaat 47320567  T
Q  781 ctgtaatccctgtcttacttaattgtcatagcacaactcaatatca 826  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  47320568 ctgtaatccctgtcttacttaattgtcatagcacaactcaatatca 47320613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 57 - 302
Target Start/End: Original strand, 47316359 - 47316605
Alignment:
Q  57 aacagcagttaaagttgcatttccagataagatggaaaagtatgatgaattcttgaaactcgtagttgattacaatgccaaaagaattgatatgagagtt 156  Q
    ||||| |||||| ||| |||||  |||||||||||||||||   ||||||||||||||||| ||| ||||||| | ||||||||||||||| | ||||||    
T  47316359 aacagaagttaaggttacatttgaagataagatggaaaagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaagagtt 47316458  T
Q  157 ttcaaagaaggactgatggagttgtttaaagaccataaagatttacttttgggaatcaacacttggttgccagagggacacaaaatctcacttccattgg 256  Q
     ||||||||||| |||||||||||||||||||||||||| |||||||||  ||| ||||||| |  ||||||||||||||||||||||||||| ||||||    
T  47316459 gtcaaagaaggaatgatggagttgtttaaagaccataaaaatttactttcaggattcaacaccttcttgccagagggacacaaaatctcactttcattgg 47316558  T
Q  257 atggtgat-gaacaacaaggtgatgatggattagagttgaaatatga 302  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  47316559 atggtgatagaacaacaaggtgatgatggattagagttgaaagatga 47316605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 47314599 - 47314700
Alignment:
Q  48 gtcgtttgcaacagcagttaaagttgcatttccagataagatggaaaagtatgatg--aattcttgaaactcgtagttgattacaatgccaaaagaattg 145  Q
    |||| ||| |||||| |||||||||||||||| | |||||| ||||||||||| ||  ||||| |||||||| ||||| ||||| |||||||||||||||    
T  47314599 gtcgcttgtaacagcggttaaagttgcatttcaaaataagagggaaaagtatggtgaaaattcctgaaactcctagttaattaccatgccaaaagaattg 47314698  T
Q  146 at 147  Q
    ||    
T  47314699 at 47314700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 81 - 201
Target Start/End: Original strand, 47319635 - 47319755
Alignment:
Q  81 agataagatggaaaagtatgatgaattcttgaaactcgtagttgattacaatgccaaaagaattgatatgagagttttcaaagaaggactgatggagttg 180  Q
    |||||||| |||||||| |||||| ||| |||||||| ||  ||||| ||  ||||||||||||||||  |||||  ||||||||||| | |||||||||    
T  47319635 agataagaaggaaaagtttgatgatttcatgaaactcctacatgatttcagggccaaaagaattgatagaagagtcatcaaagaaggaattatggagttg 47319734  T
Q  181 tttaaagaccataaagattta 201  Q
    || ||||| ||| ||||||||    
T  47319735 ttgaaagaacatcaagattta 47319755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 279
Target Start/End: Original strand, 47316120 - 47316323
Alignment:
Q  76 tttccagataagatggaaaagtatgatgaattcttgaaactcgtagttgattacaatgccaaaagaattgatatgagagttttcaaagaaggactgatgg 175  Q
    |||| |||||||| ||||| |||||| |||||| |||||||| ||   |||| |   ||||||||||||||||  |||||  ||||||||||| | | ||    
T  47316120 tttcaagataagagggaaatgtatgaagaattcgtgaaactcctacaagatttcggcgccaaaagaattgatagaagagtcgtcaaagaaggagttacgg 47316219  T
Q  176 agttgtttaaagaccataaagatttacttttgggaatcaacacttggttgccagagggacacaaaatctcacttccattggatggtgatgaacaacaagg 275  Q
    ||||||| ||||| ||| |||||||| ||||  || ||||||  |  ||||||   |||||  ||||||||||||||||||||| ||||  ||||||| |    
T  47316220 agttgttgaaagaacatcaagatttaattttaagattcaacatcttcttgccaccaggacatgaaatctcacttccattggatgatgatttacaacaacg 47316319  T
Q  276 tgat 279  Q
    ||||    
T  47316320 tgat 47316323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 47314437 - 47314506
Alignment:
Q  132 tgccaaaagaattgatatgagagttttcaaagaaggactgatggagttgtttaaagaccataaagattta 201  Q
    |||||||||||||||||  |||||| ||||||||||| | ||||||||||||||||| ||| ||||||||    
T  47314437 tgccaaaagaattgataaaagagttgtcaaagaaggagttatggagttgtttaaagagcatcaagattta 47314506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 706 - 788
Target Start/End: Original strand, 47316892 - 47316978
Alignment:
Q  706 gtacgtagaattgtatcaattg----atattcatagcacaactcccatataagtacaaaaaagttgcttatccagaaatctgtaatc 788  Q
    |||| |||||||||||||||||    |||||||||||||||||| ||| ||||||||| ||||| ||||||| ||||||||| ||||    
T  47316892 gtacatagaattgtatcaattgattgatattcatagcacaactcacatttaagtacaagaaagtagcttatctagaaatctgcaatc 47316978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 47314698 - 47314765
Alignment:
Q  196 gatttacttttgggaatcaacacttggttgccagagggacacaaaatctcacttccattggatggtga 263  Q
    ||||||||||||||| |||||||||  ||||||  |||||||||||||||| ||||||||| ||||||    
T  47314698 gatttacttttgggactcaacactttcttgccaccgggacacaaaatctcatttccattgggtggtga 47314765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 339 - 404
Target Start/End: Original strand, 47316597 - 47316662
Alignment:
Q  339 gaaagatgacgaacaataacaagtttgactacaatcctgcatgtagcaattcctagtttgatctat 404  Q
    ||||||||| ||||||||| |||||||| ||||||| ||| | ||| |||||||||||||||||||    
T  47316597 gaaagatgatgaacaataataagtttgattacaatcgtgcgtatagaaattcctagtttgatctat 47316662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 47307046 - 47307166
Alignment:
Q  160 aaagaaggactgatggagttgtttaaagaccataaagatttacttttgggaatcaacacttggttgccagagggacacaaaatctcacttccattggatg 259  Q
    ||||||||| ||| ||||||||| ||||| ||||||| |||| |||   || ||||||  |  ||||||   |||||  |||||||||||||||||||||    
T  47307046 aaagaaggaatgacggagttgttaaaagatcataaaggtttaatttcaagattcaacatcttcttgccaccaggacaagaaatctcacttccattggatg 47307145  T
Q  260 gtgatgaacaacaaggtgatg 280  Q
     ||||||||||| ||||||||    
T  47307146 atgatgaacaacgaggtgatg 47307166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 703 - 745
Target Start/End: Original strand, 47311515 - 47311557
Alignment:
Q  703 caagtacgtagaattgtatcaattgatattcatagcacaactc 745  Q
    ||||||| |||||||||||||||||||||||||| ||||||||    
T  47311515 caagtacatagaattgtatcaattgatattcatatcacaactc 47311557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 20291280 - 20291313
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||||||||||||||    
T  20291280 tgtgagagttaacttaaaatcagatttctgcaga 20291313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 20302198 - 20302231
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||||||||||||||    
T  20302198 tgtgagagttaacttaaaatcagatttctgcaga 20302231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 6822775 - 6822808
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  6822775 tgtgagagttaacttaaaatcaggtttctgcaga 6822808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 13761577 - 13761610
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  13761577 tgtgagagttaacttaaaatcaggtttctgcaga 13761610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 47177078 - 47177111
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  47177078 tgtgagagttaacttaaaatcaggtttctgcaga 47177111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 47179428 - 47179461
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  47179428 tgtgagagttaacttaaaatcaggtttctgcaga 47179461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 51752104 - 51752137
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  51752104 tgtgagagttaacttaaaatcaggtttctgcaga 51752137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 833 - 867
Target Start/End: Original strand, 3878321 - 3878355
Alignment:
Q  833 ctgtgagagttaacttaaaatcagatttctgcaga 867  Q
    |||||||||||||||||||||||||||||||||||    
T  3878321 ctgtgagagttaacttaaaatcagatttctgcaga 3878355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 867
Target Start/End: Complemental strand, 40837262 - 40837228
Alignment:
Q  833 ctgtgagagttaacttaaaatcagatttctgcaga 867  Q
    |||||||||||||||||||||||| ||||||||||    
T  40837262 ctgtgagagttaacttaaaatcaggtttctgcaga 40837228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Complemental strand, 1047503 - 1047470
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  1047503 tgtgagagttaacttaaaatcaggtttctgcaga 1047470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 833 - 867
Target Start/End: Complemental strand, 14507717 - 14507683
Alignment:
Q  833 ctgtgagagttaacttaaaatcagatttctgcaga 867  Q
    |||||||||||||||||||||||||||||||||||    
T  14507717 ctgtgagagttaacttaaaatcagatttctgcaga 14507683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 867
Target Start/End: Complemental strand, 26068883 - 26068849
Alignment:
Q  833 ctgtgagagttaacttaaaatcagatttctgcaga 867  Q
    |||||||||||||||||||||||| ||||||||||    
T  26068883 ctgtgagagttaacttaaaatcaggtttctgcaga 26068849  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 832 - 865
Target Start/End: Complemental strand, 29755281 - 29755248
Alignment:
Q  832 tctgtgagagttaacttaaaatcagatttctgca 865  Q
    ||||||||||||||||||||||||| ||||||||    
T  29755281 tctgtgagagttaacttaaaatcaggtttctgca 29755248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 33308685 - 33308718
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  33308685 tgtgagagttaacttaaaatcaggtttctgcaga 33308718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 33310954 - 33310987
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  33310954 tgtgagagttaacttaaaatcaggtttctgcaga 33310987  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 835 - 867
Target Start/End: Original strand, 5191374 - 5191406
Alignment:
Q  835 gtgagagttaacttaaaatcagatttctgcaga 867  Q
    |||||||||||||||||||||||||||||||||    
T  5191374 gtgagagttaacttaaaatcagatttctgcaga 5191406  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 867
Target Start/End: Complemental strand, 6066292 - 6066258
Alignment:
Q  833 ctgtgagagttaacttaaaatcagatttctgcaga 867  Q
    |||||||||||||||||||||||| ||||||||||    
T  6066292 ctgtgagagttaacttaaaatcaggtttctgcaga 6066258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 867
Target Start/End: Original strand, 35777162 - 35777196
Alignment:
Q  833 ctgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||| |||||||||||||    
T  35777162 ctgtgagagttaacttaaaattagatttctgcaga 35777196  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Complemental strand, 7606963 - 7606930
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  7606963 tgtgagagttaacttaaaatcaggtttctgcaga 7606930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 25388618 - 25388651
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  25388618 tgtgagagttaacttaaaatcaggtttctgcaga 25388651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 38210067 - 38210100
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  38210067 tgtgagagttaacttaaaatcaggtttctgcaga 38210100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 50493676 - 50493709
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  50493676 tgtgagagttaacttaaaatcaggtttctgcaga 50493709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Complemental strand, 53896754 - 53896721
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  53896754 tgtgagagttaacttaaaatcaggtttctgcaga 53896721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 831 - 867
Target Start/End: Complemental strand, 45332678 - 45332642
Alignment:
Q  831 atctgtgagagttaacttaaaatcagatttctgcaga 867  Q
    |||||||||||||||||||||||||| ||||||||||    
T  45332678 atctgtgagagttaacttaaaatcaggtttctgcaga 45332642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 838 - 867
Target Start/End: Original strand, 27104519 - 27104548
Alignment:
Q  838 agagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||||||||||    
T  27104519 agagttaacttaaaatcagatttctgcaga 27104548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 832 - 867
Target Start/End: Original strand, 11434767 - 11434802
Alignment:
Q  832 tctgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||||| ||||||||||    
T  11434767 tctgtgagagttaacttaaaatcaggtttctgcaga 11434802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 836 - 867
Target Start/End: Original strand, 51015042 - 51015073
Alignment:
Q  836 tgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||||||||||||    
T  51015042 tgagagttaacttaaaatcagatttctgcaga 51015073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 867
Target Start/End: Original strand, 7941132 - 7941166
Alignment:
Q  833 ctgtgagagttaacttaaaatcagatttctgcaga 867  Q
    |||||||||||||||||||||||| ||||||||||    
T  7941132 ctgtgagagttaacttaaaatcaggtttctgcaga 7941166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 867
Target Start/End: Original strand, 24888589 - 24888623
Alignment:
Q  833 ctgtgagagttaacttaaaatcagatttctgcaga 867  Q
    |||| ||||||||||||||||||||||||||||||    
T  24888589 ctgtaagagttaacttaaaatcagatttctgcaga 24888623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 867
Target Start/End: Complemental strand, 37089915 - 37089881
Alignment:
Q  833 ctgtgagagttaacttaaaatcagatttctgcaga 867  Q
    |||| ||||||||||||||||||||||||||||||    
T  37089915 ctgtaagagttaacttaaaatcagatttctgcaga 37089881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Complemental strand, 3825112 - 3825079
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  3825112 tgtgagagttaacttaaaatcaggtttctgcaga 3825079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 863
Target Start/End: Original strand, 8528918 - 8528947
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctg 863  Q
    ||||||||||||||||||||||||||||||    
T  8528918 tgtgagagttaacttaaaatcagatttctg 8528947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Complemental strand, 9177035 - 9177002
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  9177035 tgtgagagttaacttaaaatcaggtttctgcaga 9177002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Complemental strand, 16932360 - 16932327
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  16932360 tgtgagagttaacttaaaatcaggtttctgcaga 16932327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Complemental strand, 16934714 - 16934681
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  16934714 tgtgagagttaacttaaaatcaggtttctgcaga 16934681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Complemental strand, 22780952 - 22780919
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  22780952 tgtgagagttaacttaaaatcaggtttctgcaga 22780919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Complemental strand, 22783317 - 22783284
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  22783317 tgtgagagttaacttaaaatcaggtttctgcaga 22783284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 38408993 - 38409026
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    |||||||||||||||||||| |||||||||||||    
T  38408993 tgtgagagttaacttaaaattagatttctgcaga 38409026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 867
Target Start/End: Original strand, 18810482 - 18810516
Alignment:
Q  833 ctgtgagagttaacttaaaatcagatttctgcaga 867  Q
    |||||||||||||||||||||||| ||||||||||    
T  18810482 ctgtgagagttaacttaaaatcaggtttctgcaga 18810516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 43079347 - 43079380
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  43079347 tgtgagagttaacttaaaatcaggtttctgcaga 43079380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 43081722 - 43081755
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  43081722 tgtgagagttaacttaaaatcaggtttctgcaga 43081755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Complemental strand, 13054 - 13021
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  13054 tgtgagagttaacttaaaatcaggtttctgcaga 13021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 28941 - 28974
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  28941 tgtgagagttaacttaaaatcaggtttctgcaga 28974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 838 - 867
Target Start/End: Complemental strand, 69829 - 69800
Alignment:
Q  838 agagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||||||||||    
T  69829 agagttaacttaaaatcagatttctgcaga 69800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Original strand, 2174680 - 2174713
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  2174680 tgtgagagttaacttaaaatcaggtttctgcaga 2174713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 838 - 867
Target Start/End: Original strand, 4236374 - 4236403
Alignment:
Q  838 agagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||||||||||    
T  4236374 agagttaacttaaaatcagatttctgcaga 4236403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Complemental strand, 21684969 - 21684936
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  21684969 tgtgagagttaacttaaaatcaggtttctgcaga 21684936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Complemental strand, 25921992 - 25921959
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  25921992 tgtgagagttaacttaaaatcaggtttctgcaga 25921959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Complemental strand, 31179933 - 31179900
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  31179933 tgtgagagttaacttaaaatcaggtttctgcaga 31179900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 834 - 867
Target Start/End: Complemental strand, 34479972 - 34479939
Alignment:
Q  834 tgtgagagttaacttaaaatcagatttctgcaga 867  Q
    ||||||||||||||||||||||| ||||||||||    
T  34479972 tgtgagagttaacttaaaatcaggtttctgcaga 34479939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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