View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5873-Insertion-3 (Length: 603)
Name: NF5873-Insertion-3
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5873-Insertion-3 |
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| [»] chr3 (14 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 521; Significance: 0; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 9 - 603
Target Start/End: Complemental strand, 33608313 - 33607715
Alignment:
| Q |
9 |
aatgtgtgactatcatacacacaatacatattcacttcagcaccagccgccttccttagaatatctggatagaatttttgaagaaacggcaccatcgttg |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33608313 |
aatgtttgactatcatacacacaatacatattcacttcagcaccagctgccttccttagaatatctggaaagaatttttgaagaaacggcaccatcgttg |
33608214 |
T |
|
| Q |
109 |
tgacacctcctgaaa-ttcgacattttcacaaccaaatcatgagaataaatttcgacaataattttgattgctaatgtaatttaattatgtctaataaat |
207 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33608213 |
tgacacctcctgaaaattcgacattttcacaacaaaatcatgagaataaatttcgacaataattttgattgctaatgtaattcaattatgtctaataaat |
33608114 |
T |
|
| Q |
208 |
ataataaggtgacacaattcattcgtaacaaagtgaacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatg |
307 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33608113 |
ataataaggtgtcacaattcatttgtaacaaagtgaacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatg |
33608014 |
T |
|
| Q |
308 |
atgattgaaagtgttaacttgccaccaatattgatagcagcatctggtgtactatccacagcaaataccacaccagccatttttgaaataccttttttgt |
407 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
33608013 |
atgattgaaagtgttaacttgccaacaatattgacagcagcatctggtgtactatccacagcaaataccccaccagccatttttgaaatacctttttttt |
33607914 |
T |
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| Q |
408 |
tttgtctatggatttcag---ttagtttaagtctgtgctggttagggtgctcataattagaagtagggcaactaatttataggccaagggtttgcatggt |
504 |
Q |
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| T |
33607913 |
ttcttctatggatttcagtaattagtttaagtctgtgctggttagggtgctcataattagaagtagggcaactaatttataggctaagggtttgcatggt |
33607814 |
T |
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| Q |
505 |
cgtttgtctttaactagatgtatgtggatgaaacatactaggacttttttattcctataatagaattgtcattctattaggcgataatcttgttaatca |
603 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33607813 |
cgtttgtctttaactagatgtatgtggatgaaacatactaggacttttttattcctataatagaattgtcattctattaggcgataatcttgttaatca |
33607715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 33616091 - 33615981
Alignment:
| Q |
15 |
tgactatcatacacacaatacatattcacttcagcaccagccgccttccttagaatatctggatagaatttttgaagaaacggcaccatcgttgtgacac |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| || ||||| || ||||| |||||| |||||||||| ||||| |||||||||||||| |||| |
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| T |
33616091 |
tgactatcatacacacaatacatattcacttcggcactggctgcctttctcagaatgtctggaaagaatttttggagaaatggcaccatcgttgtaacac |
33615992 |
T |
|
| Q |
115 |
ctcctgaaatt |
125 |
Q |
| |
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||||||||||| |
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| T |
33615991 |
ctcctgaaatt |
33615981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 242 - 340
Target Start/End: Complemental strand, 33626373 - 33626275
Alignment:
| Q |
242 |
gaacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgttaacttgccaccaatattg |
340 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| | | |||||| |||| ||||| |||| |
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| T |
33626373 |
gaacctgaaattccgatgtcatatccaaaaagaaggccactggaagcagcaactatgcaggtaatgatgattaagaatgttaatttgctaccaacattg |
33626275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 243 - 347
Target Start/End: Complemental strand, 33615877 - 33615773
Alignment:
| Q |
243 |
aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgttaacttgccaccaatattgat |
342 |
Q |
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||||||||| ||| | ||||||||| ||||||| |||| ||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
33615877 |
aacctgaaactccgagatcatatccataaagaaggccaccggatgcagcaactatgcaggtaatgatgattgagagtgttaacttgccaccaatattgat |
33615778 |
T |
|
| Q |
343 |
agcag |
347 |
Q |
| |
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|||| |
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| T |
33615777 |
ggcag |
33615773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 33587530 - 33587423
Alignment:
| Q |
15 |
tgactatcatacacacaatacatattcacttcagcaccagccgccttccttagaatatctggatagaatttttgaagaaacggcaccatcgttgtgacac |
114 |
Q |
| |
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||||| ||||||||||| |||||||| ||||||| |||||| ||||| |||||||||||||| ||||||| | ||||| |||||||| ||||| |||| |
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| T |
33587530 |
tgactgtcatacacacagtacatatttacttcagtaccagctgcctttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacac |
33587431 |
T |
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| Q |
115 |
ctcctgaa |
122 |
Q |
| |
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|||||||| |
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| T |
33587430 |
ctcctgaa |
33587423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 33594702 - 33594595
Alignment:
| Q |
15 |
tgactatcatacacacaatacatattcacttcagcaccagccgccttccttagaatatctggatagaatttttgaagaaacggcaccatcgttgtgacac |
114 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||| |||||| ||||| |||||||||||||| ||||||| | ||||| |||||||| ||||| |||| |
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| T |
33594702 |
tgactgtcatacacacagtacatatttacttcagtaccagctgcctttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacac |
33594603 |
T |
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| Q |
115 |
ctcctgaa |
122 |
Q |
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|||||||| |
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| T |
33594602 |
ctcctgaa |
33594595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 33601833 - 33601726
Alignment:
| Q |
15 |
tgactatcatacacacaatacatattcacttcagcaccagccgccttccttagaatatctggatagaatttttgaagaaacggcaccatcgttgtgacac |
114 |
Q |
| |
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||||| ||||||||||| |||||||| ||||||| |||||| ||||| |||||||||||||| ||||||| | ||||| |||||||| ||||| |||| |
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| T |
33601833 |
tgactgtcatacacacagtacatatttacttcagtaccagctgcctttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacac |
33601734 |
T |
|
| Q |
115 |
ctcctgaa |
122 |
Q |
| |
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|||||||| |
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|
| T |
33601733 |
ctcctgaa |
33601726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 33626588 - 33626478
Alignment:
| Q |
15 |
tgactatcatacacacaatacatattcacttcagcaccagccgccttccttagaatatctggatagaatttttgaagaaacggcaccatcgttgtgacac |
114 |
Q |
| |
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||||||||||||||||| ||||| ||||| | || |||| | ||||| |||||||| ||||| ||||||||| |||||| ||| ||| |||||||||| |
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| T |
33626588 |
tgactatcatacacacagtacatgttcaccttagtaccaactgcctttcttagaatgtctgggaagaattttttaagaaatggcttcatagttgtgacac |
33626489 |
T |
|
| Q |
115 |
ctcctgaaatt |
125 |
Q |
| |
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||||||||||| |
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| T |
33626488 |
ctcctgaaatt |
33626478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 500
Target Start/End: Complemental strand, 33615641 - 33615566
Alignment:
| Q |
425 |
gttagtttaagtctgtgctggttagggtgctcataattagaagtagggcaactaatttataggccaagggtttgca |
500 |
Q |
| |
|
|||||||||| ||| |||||||| || |||||||||||||| | ||| ||||||||||||||||||||| ||||| |
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|
| T |
33615641 |
gttagtttaattctatgctggttgggacgctcataattagaaatggggaaactaatttataggccaaggggttgca |
33615566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 33594183 - 33594103
Alignment:
| Q |
243 |
aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgtta |
323 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||| || ||||||||||| || |||||||| | ||| ||||||| |
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| T |
33594183 |
aacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgtta |
33594103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 33601314 - 33601234
Alignment:
| Q |
243 |
aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgtta |
323 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||| || ||||||||||| || |||||||| | ||| ||||||| |
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| T |
33601314 |
aacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgtta |
33601234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 309
Target Start/End: Complemental strand, 33587011 - 33586945
Alignment:
| Q |
243 |
aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgat |
309 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||| || ||||||||||| || |||||||| |
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|
| T |
33587011 |
aacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgat |
33586945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 33621467 - 33621350
Alignment:
| Q |
15 |
tgactatcatacacacaatacatattcacttcagcaccagccgccttccttagaatatctggatagaatttttgaagaaacggcaccatcgttgtgacac |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||| | || |||||| || || || ||||| | ||| | ||||||| |||||| ||| ||| || ||||||| |
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|
| T |
33621467 |
tgactatcatacacacaatacatgttcaccttagtaccagctgcatttctaagaatgtatgggaataattttttaagaaatggcttcatggtggtgacac |
33621368 |
T |
|
| Q |
115 |
ctcctgaaattcgacatt |
132 |
Q |
| |
|
|| |||||||| |||||| |
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| T |
33621367 |
cttctgaaatttgacatt |
33621350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 568 - 603
Target Start/End: Complemental strand, 33620994 - 33620959
Alignment:
| Q |
568 |
aattgtcattctattaggcgataatcttgttaatca |
603 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |
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| T |
33620994 |
aattgtcattctattaggcgatattcttgttaatca |
33620959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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