View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5873-Insertion-5 (Length: 441)
Name: NF5873-Insertion-5
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5873-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 239 - 439
Target Start/End: Original strand, 22573598 - 22573798
Alignment:
| Q |
239 |
agattatacgaaataataccaaacgattccgtaagcaccgcgaccaataggcatgatcggaggacgatacttagccgtaacctcgaaaagattaccgaac |
338 |
Q |
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| T |
22573598 |
agattatacgaagcaataccaaacgattccgtaagcaccacgaccaataggcatgatcggaggacgatacttagccgtaacctcgaaaagattaccgaac |
22573697 |
T |
|
| Q |
339 |
acgttgtactgaacgaactgtccgccgtgagtctgaaccgccggaaactcagcgacgccgttttggttaactccggccattgatttgatttgatttgatt |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22573698 |
acgttgtactgaacgaactgtccgccgtgagtctgaaccgccggaaactcagcgacgccgttttggttaactccggccattgatttgatttgatttgatt |
22573797 |
T |
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| Q |
439 |
t |
439 |
Q |
| |
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| |
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| T |
22573798 |
t |
22573798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 22573365 - 22573515
Alignment:
| Q |
9 |
acattttcatgatctaaatgcctaagaagcttaatctcacggagcgtacgcttcgcatccatatgattatcaaaagcattcgctatcttcttcacagcaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22573365 |
acattttcatgatctaaatgcctaagaagcttaatctcacggagcgtacgcttcgcatccatatgattatcaaaagcattcgctatcttcttcacagcaa |
22573464 |
T |
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| Q |
109 |
ccaactcattcgtctccgtattcaacaacgaacttcaaaaatcacatcaac |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22573465 |
ccaactcattcgtctccgtattcaacaacgaacttcaaaaatcacatcaac |
22573515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 21493566 - 21493510
Alignment:
| Q |
65 |
atccatatgattatcaaaag--cattcgctatcttcttcacagcaaccaactcattc |
119 |
Q |
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|||||||||||||| |||| |||||| ||||||||||||||||||||| |||||| |
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| T |
21493566 |
atccatatgattataaaaaaaacattcgttatcttcttcacagcaaccaattcattc |
21493510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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