View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5873-Insertion-7 (Length: 405)
Name: NF5873-Insertion-7
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5873-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 11729422 - 11729074
Alignment:
| Q |
9 |
tcactcacatcctcgtgccactgaaatattaacagttcttgaaggcgcattggaagttggattcatcacttcaaatccggaaaaccgccattttaggaaa |
108 |
Q |
| |
|
|||||||||||||||||| || |||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||||||| || | ||||||| |
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| T |
11729422 |
tcactcacatcctcgtgctacggaaatattcactgttcttgaaggcacattggaagttggattcatcacttcaaatccagaaaaccggcactctaggaaa |
11729323 |
T |
|
| Q |
109 |
gttctacaaaagggagatgtgtttgtgtttcctatagggctcattcactatcaaagaaatatcgg--acatgacaatgttattgcgatcgctgctcttag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || | ||||||| ||| |||| || ||||||||||| |
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| T |
11729322 |
gttctacaaaagggagatgtgtttgtgtttcctatagagctcattcactatcaaagaaatattggatatatgacaacgttgttgccattgctgctcttag |
11729223 |
T |
|
| Q |
207 |
tagccagaatccaggagctataactattggcaatgcagtgtttggggctacacctgacatagctagcgaagtgctcgttaagtcttttaaattggacaag |
306 |
Q |
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|
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| ||| ||||||||||||||||||||||| |
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| T |
11729222 |
tagtcagaatccaggagctataactattggcaatgcagtgtttggggctgcacctgaaatagctagtgaagttctcattaagtcttttaaattggacaag |
11729123 |
T |
|
| Q |
307 |
actaccatcaattacttgcagtccaagttttagaatattgggaggcaattca |
358 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
11729122 |
actac---caattacttgctgtccaagttttagaatattgggagggaattca |
11729074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 351
Target Start/End: Complemental strand, 11720308 - 11719966
Alignment:
| Q |
9 |
tcactcacatcctcgtgccactgaaatattaacagttcttgaaggcgcattggaagttggattcatcacttcaaatccggaaaaccgccattttaggaaa |
108 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || ||||| |||||| | || ||||||||||||||||| |||||||| ||||||||||| |||| |||| |
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|
| T |
11720308 |
tcactcacatccccgtgccactgaaatattcactgttctcgaaggcacgttagaagttggattcatcacgtcaaatcctgaaaaccgccactttaagaaa |
11720209 |
T |
|
| Q |
109 |
gttctacaaaagggagatgtgtttgtgtttcctatagggctcattcactatcaaagaaatatcggacatgacaatgttattgcgatcgctgctcttagta |
208 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| |||| || ||||||||||||| |
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|
| T |
11720208 |
gtactacaaaagggagatgtgtttgtgtttcctatagggctcattcactatcaaagaaatattggaaattgtaatgttgttgctattgctgctcttagta |
11720109 |
T |
|
| Q |
209 |
gccagaatccaggagctataactattggcaatgcagtgtttggggctacacctgacatagctagcgaagtgctcgttaagtcttttaaattggacaagac |
308 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| | ||| |||||||||||||||||| |
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|
| T |
11720108 |
gtcagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagcaagtgaagtgctcatcaaggcttttaaattggacaagaa |
11720009 |
T |
|
| Q |
309 |
taccatcaattacttgcagtccaagttttagaatattgggagg |
351 |
Q |
| |
|
| ||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
11720008 |
tgccatcaattacttacagtcaaagttttagaatattgggagg |
11719966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 342
Target Start/End: Complemental strand, 11672178 - 11671845
Alignment:
| Q |
9 |
tcactcacatcctcgtgccactgaaatattaacagttcttgaaggcgcattggaagttggattcatcacttcaaatccggaaaaccgccattttaggaaa |
108 |
Q |
| |
|
||||||||||||||| || ||||||||||| || ||||| |||||| | || |||||||||||||||||||||||||| ||||||||||| ||||| ||| |
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|
| T |
11672178 |
tcactcacatcctcgcgctactgaaatattcactgttctcgaaggcacgttagaagttggattcatcacttcaaatccagaaaaccgccactttagtaaa |
11672079 |
T |
|
| Q |
109 |
gttctacaaaagggagatgtgtttgtgtttcctatagggctcattcactatcaaagaaatatcggacatgacaatgttattgcgatcgctgctcttagta |
208 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
11672078 |
gttctacataagggagatgtgtttgtgtttcctatagggctcattcactatcaaagaaatatcggacatgacaatgttattgcaatcgctgctcttagta |
11671979 |
T |
|
| Q |
209 |
gccagaatccaggagctataactattggcaatgcagtgtttggggctacacctgacatagctagcgaagtgctcgttaagtcttttaaattggacaagac |
308 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||| | |||| |||| |
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|
| T |
11671978 |
gccagaatccgggagctatcactattggcaatgcagtgtttggtgctacacctgaaatagctagtgaagtgcttattaaggcttttcagctggagaagaa |
11671879 |
T |
|
| Q |
309 |
taccatcaattacttgcagtccaagttttagaat |
342 |
Q |
| |
|
| ||||||| || |||||||| |||||||||||| |
|
|
| T |
11671878 |
tgccatcaactatttgcagtctaagttttagaat |
11671845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 360
Target Start/End: Complemental strand, 11681068 - 11680714
Alignment:
| Q |
9 |
tcactcacatcctcgtgccactgaaatattaacagttcttgaaggcgcattggaagttggattcatcacttcaaatccggaaaaccgccattttaggaaa |
108 |
Q |
| |
|
|||||||||||||||||| || ||||||| || ||||||||||| |||| ||||||||||||||||||||||| || ||||||||||| ||| | ||| |
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|
| T |
11681068 |
tcactcacatcctcgtgctaccgaaatatgcactgttcttgaaggaacattagaagttggattcatcacttcaaacccagaaaaccgccacttttgtaaa |
11680969 |
T |
|
| Q |
109 |
gttctacaaaagggagatgtgtttgtgtttc---ctatagggctcattcactatcaaagaaatatcggacatgacaatgttattgcgatcgctgctctta |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| | |||||||| |||| || |||||||||| |
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|
| T |
11680968 |
gttctacataagggagatgtgtttgtgtttcttcctataggtctcattcactatcaaagaaatattggatacaacaatgttgttgccattgctgctctta |
11680869 |
T |
|
| Q |
206 |
gtagccagaatccaggagctataactattggcaatgcagtgtttggggctacacctgacatagctagcgaagtgctcgttaagtcttttaaattggacaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| | ||||| |||||||||| |
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|
| T |
11680868 |
gtagccagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagctagcgaagttctcattatggcttttcaattggacaa |
11680769 |
T |
|
| Q |
306 |
gactaccatcaattacttgcagtccaagttttagaatattgggaggcaattcaac |
360 |
Q |
| |
|
|| | ||||||||||||||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
11680768 |
gaatgccatcaattacttgcagtcgaagttttaaaatattgggagggaattcaac |
11680714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 358
Target Start/End: Original strand, 11693671 - 11694023
Alignment:
| Q |
9 |
tcactcacatcctcgtgccactgaaatattaacagttcttgaaggcgcattggaagttggattcatcacttcaaatccggaaaaccgccattttaggaaa |
108 |
Q |
| |
|
|||||||||||||||||| || ||||||| || ||||||||||| |||| ||||||||||||||||||||||| || ||||||||||| ||| | ||| |
|
|
| T |
11693671 |
tcactcacatcctcgtgctaccgaaatatgcactgttcttgaaggaacattagaagttggattcatcacttcaaacccagaaaaccgccacttttgtaaa |
11693770 |
T |
|
| Q |
109 |
gttctacaaaagggagatgtgtttgtgtttc---ctatagggctcattcactatcaaagaaatatcggacatgacaatgttattgcgatcgctgctctta |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||| | |||||||| |||| || |||||||||| |
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|
| T |
11693771 |
gttctacataagggagatgtgtttgtgtttctacctataggtcttattcactatcaaagaaatattggatacaacaatgttgttgccattgctgctctta |
11693870 |
T |
|
| Q |
206 |
gtagccagaatccaggagctataactattggcaatgcagtgtttggggctacacctgacatagctagcgaagtgctcgttaagtcttttaaattggacaa |
305 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||| |||||||||| |
|
|
| T |
11693871 |
ctagcaagaatccaggagctataactattggcaatgcagtgtttggggctacacctgaaatagctagcgaagttctcattaaggcttttcaattggacaa |
11693970 |
T |
|
| Q |
306 |
gactaccatcaattacttgcagtccaagttttagaatattgggaggcaattca |
358 |
Q |
| |
|
|| | ||||||||||||||||||| ||||||||||||||||||| | |||||| |
|
|
| T |
11693971 |
gaatgccatcaattacttgcagtcgaagttttagaatattgggaaggaattca |
11694023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 9 - 258
Target Start/End: Original strand, 11712703 - 11712959
Alignment:
| Q |
9 |
tcactcacatcctcgtgccactgaaatattaacagttcttgaaggcgcattggaagttggattcatcacttcaaatccggaaaaccgccattttaggaaa |
108 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| || ||||||||||| ||| | ||| |
|
|
| T |
11712703 |
tcactcacatcctcgtgctactgaaatattaactgttcttgaaggaacattagaagttggattcatcacttcaaacccagaaaaccgccactttcgtaaa |
11712802 |
T |
|
| Q |
109 |
gttctacaaaagggagatgtgtttgtgtttcctatagggctcattcactatcaaagaaatatcggacatgacaatgtt--------attgcgatcgctgc |
200 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| | |||||||| |||| || ||||| |
|
|
| T |
11712803 |
gttctacataagagagatgtgtttgtgttt-ctataggtctcattcactatcaaagaaatattggatacaacaatgttgttgccaacttgccattgctgc |
11712901 |
T |
|
| Q |
201 |
tcttagtagccagaatccaggagctataactattggcaatgcagtgtttggggctaca |
258 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
11712902 |
tcttagtagccagaatccaggagctatcactattggcaatgaagtgtttggggctaca |
11712959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 348
Target Start/End: Complemental strand, 7662275 - 7661936
Alignment:
| Q |
9 |
tcactcacatcctcgtgccactgaaatattaacagttcttgaaggcgcattggaagttggattcatcacttcaaatccggaaaaccgccattttaggaaa |
108 |
Q |
| |
|
|||||||||||||||||| || |||||||| || |||||||||||| | || ||||||||||||||||||||||| |||||||||||||| ||||| ||| |
|
|
| T |
7662275 |
tcactcacatcctcgtgctaccgaaatattcactgttcttgaaggcactttagaagttggattcatcacttcaaacccggaaaaccgccactttagaaaa |
7662176 |
T |
|
| Q |
109 |
gttctacaaaagggagatgtgtttgtgtttcctatagggctcattcactatcaaagaaatatcggacatgacaatgttattgcgatcgctgctcttagta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| ||||| |||| || || |||||||||| |
|
|
| T |
7662175 |
gttctacaaaagggagatgtgtttgtgtttcctataggactcattcactatcaaagaaatataggaaatgctcatgttgttgccattgcagctcttagta |
7662076 |
T |
|
| Q |
209 |
gccagaatccaggagctataactattggcaatgcagtgtttggggctacacctgacatagctagcgaagtgctcgttaagtcttttaaattggacaagac |
308 |
Q |
| |
|
||||||||||||||| ||| |||||||| |||||| ||||||||||||||||||| |||||||| ||||| || |||||| ||||| ||||||||||||| |
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|
| T |
7662075 |
gccagaatccaggaggtatcactattggtaatgcaatgtttggggctacacctgagatagctagtgaagttcttgttaaggcttttcaattggacaagac |
7661976 |
T |
|
| Q |
309 |
taccatcaattacttgcagtccaagttttagaatattggg |
348 |
Q |
| |
|
|| ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
7661975 |
tattatcaattacttgcagtcaaagttttagattattggg |
7661936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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