View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5873-Insertion-8 (Length: 264)
Name: NF5873-Insertion-8
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5873-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 264
Target Start/End: Complemental strand, 5738085 - 5737830
Alignment:
| Q |
9 |
gacctcaacaatggactgaccacccaagtgttggtgaagatactccgaaaccatcaccggaaccgccatatctttctcagcttgtataatatgacaaggc |
108 |
Q |
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| T |
5738085 |
gacctcaacaatggactgaccacccaagtgttggtgaagatactccgaaaccatcaccggaaccgccatatctttctcagcttgtataatatgacaaggc |
5737986 |
T |
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| Q |
109 |
acagtaacaaggttcaaaatctgtctcatgtcactttgaaaaattgtccgtgacactattagagctatgtctggcctcatgttgaacaatgttcgactaa |
208 |
Q |
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| T |
5737985 |
acagtaacaaggttcaaaatctgtctcatgtcactttgaaaaattgtccgtgacactattagagctatgtctggcctcatgttgaacaatgttcgactaa |
5737886 |
T |
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| Q |
209 |
actcctgtactgccactgaatccatgtccccacccacggccagtggagcaaatcca |
264 |
Q |
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| T |
5737885 |
actcctgtactgccactgaatccatgtccccacccacggccagtggagcaaatcca |
5737830 |
T |
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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 264
Target Start/End: Original strand, 39711505 - 39711639
Alignment:
| Q |
130 |
tgtctcatgtcactttgaaaaattgtccgtgacactattagagctatgtctggcctcatgttgaacaatgttcgactaaactcctgtactgccactgaat |
229 |
Q |
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|||||||||||||||| ||||||||| || |||| |||| ||||||||||| |||||||||||||||||||| || || || |||||||| ||||| | |
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| T |
39711505 |
tgtctcatgtcacttttaaaaattgtttgtaacacgcttagggctatgtctggtctcatgttgaacaatgttcggctgaattcttgtactgctactgact |
39711604 |
T |
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| Q |
230 |
ccatgtccccacccacggccagtggagcaaatcca |
264 |
Q |
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| T |
39711605 |
ccatgtcccctccaactgccattggagcaaatcca |
39711639 |
T |
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