View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5873_high_10 (Length: 319)

Name: NF5873_high_10
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5873_high_10
NF5873_high_10
[»] chr2 (10 HSPs)
chr2 (16-291)||(43163329-43163606)
chr2 (98-159)||(33197331-33197393)
chr2 (111-151)||(33267621-33267662)
chr2 (99-154)||(32694134-32694189)
chr2 (109-151)||(33087701-33087743)
chr2 (99-151)||(11393459-11393512)
chr2 (99-151)||(11410120-11410173)
chr2 (99-136)||(26522717-26522754)
chr2 (254-291)||(43173068-43173105)
chr2 (96-136)||(5133712-5133752)
[»] chr8 (3 HSPs)
chr8 (98-153)||(14482124-14482180)
chr8 (98-153)||(39392753-39392809)
chr8 (110-153)||(8536152-8536196)
[»] chr7 (5 HSPs)
chr7 (98-153)||(24975826-24975882)
chr7 (110-159)||(45078209-45078259)
chr7 (98-135)||(1418372-1418409)
chr7 (98-153)||(5373147-5373203)
chr7 (109-160)||(11721329-11721381)
[»] scaffold0590 (1 HSPs)
scaffold0590 (98-159)||(1166-1228)
[»] scaffold0275 (1 HSPs)
scaffold0275 (98-159)||(2747-2809)
[»] chr5 (9 HSPs)
chr5 (98-152)||(12407753-12407807)
chr5 (99-159)||(26516214-26516275)
chr5 (98-153)||(20982227-20982283)
chr5 (98-159)||(37063166-37063228)
chr5 (99-151)||(13224353-13224406)
chr5 (98-154)||(35095875-35095932)
chr5 (98-149)||(7096219-7096271)
chr5 (100-159)||(10391269-10391329)
chr5 (110-153)||(11684345-11684389)
[»] chr4 (7 HSPs)
chr4 (98-151)||(36734817-36734871)
chr4 (98-154)||(19422339-19422396)
chr4 (109-151)||(4191663-4191706)
chr4 (110-151)||(2980575-2980617)
chr4 (98-157)||(32724037-32724097)
chr4 (109-152)||(41050619-41050663)
chr4 (109-148)||(47970245-47970285)
[»] chr3 (3 HSPs)
chr3 (109-158)||(41028954-41029004)
chr3 (110-154)||(34759631-34759675)
chr3 (98-153)||(44374736-44374792)
[»] scaffold0654 (1 HSPs)
scaffold0654 (110-152)||(6741-6784)
[»] scaffold0014 (1 HSPs)
scaffold0014 (110-152)||(116660-116703)
[»] chr6 (5 HSPs)
chr6 (98-159)||(2514618-2514680)
chr6 (110-151)||(31668789-31668831)
chr6 (109-157)||(3169348-3169397)
chr6 (110-158)||(29249391-29249440)
chr6 (98-150)||(29958002-29958054)
[»] chr1 (2 HSPs)
chr1 (109-154)||(870966-871012)
chr1 (109-148)||(13037791-13037831)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 43163606 - 43163329
Alignment:
Q  16 tttattacatttccacaagatgtttttaacttttaccataagatctttatagcttnnnnnnnc--aacatataactaataagatctttattatagctttt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  43163606 tttattacatttccacaagatgtttttaacttttaccataagatctttatagcttaaaaaaaactaacatataactaataagatctttattatagctttt 43163507  T
Q  114 gttatagaaatagattatacatagcacttatatgataagcgtttattgcttattaagcattttatccaagaaggccttatnnnnnnnncnnnnnnnnctc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||    
T  43163506 gttatagaaatagattatacatagcacttatatgataagcgtttattgcttattaagcattttatccaagaaggccttataaaaaataactttttttttc 43163407  T
Q  214 cttttaggagtggttccaattctaacttccatggaatgacttgttatagttatactataagtgagatggctcacctga 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43163406 cttttaggagtggttccaattctaacttccatggaatgacttgttatagttatactataagtgagatggctcacctga 43163329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 33197331 - 33197393
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacata-gcacttatatgataagcgtttat 159  Q
    ||||||| || |||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  33197331 ctttattctatcttttgttatagaaatagcttatagataagcacttatatgataagcgtttat 33197393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 33267621 - 33267662
Alignment:
Q  111 tttgttatagaaatagattatacat-agcacttatatgataa 151  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  33267621 tttgttatagaaatagattatacataagcacttatatgataa 33267662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 32694189 - 32694134
Alignment:
Q  99 tttattatagcttttgttatagaaatagattatacatagcacttatatgataagcg 154  Q
    |||||| || |||||| ||||||||||| |||||||||  ||||||||||||||||    
T  32694189 tttattttatcttttgatatagaaatagcttatacataatacttatatgataagcg 32694134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 33087701 - 33087743
Alignment:
Q  109 cttttgttatagaaatagattatacatagcacttatatgataa 151  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||    
T  33087701 cttttgttatagaaatagcttatatataacacttatatgataa 33087743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 11393459 - 11393512
Alignment:
Q  99 tttattatagcttttgttatagaaatagattatacat-agcacttatatgataa 151  Q
    ||||||||| |||||| ||||||||||| ||||| || ||||||||||||||||    
T  11393459 tttattatatcttttgatatagaaatagcttatagataagcacttatatgataa 11393512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 11410120 - 11410173
Alignment:
Q  99 tttattatagcttttgttatagaaatagattatacat-agcacttatatgataa 151  Q
    ||||||||| |||||| ||||||||||| ||||| || ||||||||||||||||    
T  11410120 tttattatatcttttgatatagaaatagcttatagataagcacttatatgataa 11410173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 26522717 - 26522754
Alignment:
Q  99 tttattatagcttttgttatagaaatagattatacata 136  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  26522717 tttattatatcttttgttatagaaatagtttatacata 26522754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 43173105 - 43173068
Alignment:
Q  254 ttgttatagttatactataagtgagatggctcacctga 291  Q
    ||||||||||||||||||| || |||||||||||||||    
T  43173105 ttgttatagttatactatatgtaagatggctcacctga 43173068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 5133752 - 5133712
Alignment:
Q  96 atctttattatagcttttgttatagaaatagattatacata 136  Q
    ||||||||| || |||||||||||||||||| |||||||||    
T  5133752 atctttattttatcttttgttatagaaatagcttatacata 5133712  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 14482180 - 14482124
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagc 153  Q
    ||||||| || |||||||||||||||||| |||||||| ||||||||||||||||||    
T  14482180 ctttattttatcttttgttatagaaatagtttatacataagcacttatatgataagc 14482124  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 39392753 - 39392809
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacatag-cacttatatgataagc 153  Q
    ||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||    
T  39392753 ctttattttatcttttgttatagaaatagtttatacatagccacttatatgataagc 39392809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 8536152 - 8536196
Alignment:
Q  110 ttttgttatagaaatagattatacat-agcacttatatgataagc 153  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||||    
T  8536152 ttttgttatagaaatagcttatacataagcacttatatgacaagc 8536196  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 24975882 - 24975826
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagc 153  Q
    ||||||| || |||||||||||||| |||||||||||| ||||||||||||||||||    
T  24975882 ctttattttatcttttgttatagaagtagattatacatcagcacttatatgataagc 24975826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 45078259 - 45078209
Alignment:
Q  110 ttttgttatagaaatagattatacata-gcacttatatgataagcgtttat 159  Q
    |||||||||| |||||| ||||||||| ||||||||||||||| |||||||    
T  45078259 ttttgttataaaaatagcttatacataagcacttatatgataaacgtttat 45078209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 1418409 - 1418372
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacat 135  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  1418409 ctttattatatcttttgttatagaaataaattatacat 1418372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 5373203 - 5373147
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagc 153  Q
    ||||||| || ||||||||||||||||||  ||||||| |||||||| |||||||||    
T  5373203 ctttattttatcttttgttatagaaatagcatatacataagcacttacatgataagc 5373147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 11721329 - 11721381
Alignment:
Q  109 cttttgttatagaaatagattatacatag-cacttatatgataagcgtttatt 160  Q
    |||||||||||||||||| ||||| | |  |||||||||||||||||||||||    
T  11721329 cttttgttatagaaatagtttataaagaaacacttatatgataagcgtttatt 11721381  T

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Target: scaffold0590 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 1166 - 1228
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagcgtttat 159  Q
    ||||||| || |||||||||||||||||| |||||||| |||||||||||||||  |||||||    
T  1166 ctttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttat 1228  T

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Target: scaffold0275 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 2809 - 2747
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagcgtttat 159  Q
    ||||||| || |||||||||||||||||| |||||||| |||||||||||||||  |||||||    
T  2809 ctttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttat 2747  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 12407753 - 12407807
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacatagcacttatatgataag 152  Q
    ||||||| || |||||||||||||||||| ||||||||| ||||| |||||||||    
T  12407753 ctttattttatcttttgttatagaaatagcttatacataacacttgtatgataag 12407807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 26516275 - 26516214
Alignment:
Q  99 tttattatagcttttgttatagaaatagattatacata-gcacttatatgataagcgtttat 159  Q
    |||||| || |||||||| ||||||||| ||||||||| |||||||||||||||||| ||||    
T  26516275 tttattttatcttttgttttagaaatagcttatacataagcacttatatgataagcgcttat 26516214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 20982227 - 20982283
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagc 153  Q
    ||||||| || | |||||||||||||||| |||||||| ||||||||||||||||||    
T  20982227 ctttattttatcctttgttatagaaatagcttatacataagcacttatatgataagc 20982283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 37063166 - 37063228
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagcgtttat 159  Q
    ||||||| || |||||||||||||||||| |||||||| |||| |||||||| |||| |||||    
T  37063166 ctttattttatcttttgttatagaaatagtttatacataagcatttatatgacaagcatttat 37063228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 13224406 - 13224353
Alignment:
Q  99 tttattatagcttttgttatagaaatagattatacat-agcacttatatgataa 151  Q
    |||||| || |||||||||||||||||| |||||||| ||||||| ||||||||    
T  13224406 tttattttatcttttgttatagaaatagcttatacataagcacttctatgataa 13224353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 35095875 - 35095932
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagcg 154  Q
    ||||||| || |||||||||||||||||| ||| | || |||||||||||||||||||    
T  35095875 ctttattttatcttttgttatagaaatagtttaaatataagcacttatatgataagcg 35095932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 7096219 - 7096271
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgat 149  Q
    ||||||| || |||||||||||||||||| |||||||| ||||||| ||||||    
T  7096219 ctttattttatcttttgttatagaaatagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 10391329 - 10391269
Alignment:
Q  100 ttattatagcttttgttatagaaatagattatacata-gcacttatatgataagcgtttat 159  Q
    ||||| || ||||||||||| |||||| |||||| || |||||||||||||||| ||||||    
T  10391329 ttattttatcttttgttataaaaatagcttatacgtaagcacttatatgataagtgtttat 10391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 153
Target Start/End: Complemental strand, 11684389 - 11684345
Alignment:
Q  110 ttttgttatagaaatagattatacat-agcacttatatgataagc 153  Q
    |||||||||| |||||| |||||||| ||||||||||||||||||    
T  11684389 ttttgttataaaaatagcttatacattagcacttatatgataagc 11684345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 36734871 - 36734817
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataa 151  Q
    ||||||| || ||||||||||||||| ||||||||||| ||||||||||||||||    
T  36734871 ctttattttaccttttgttatagaaagagattatacataagcacttatatgataa 36734817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 19422396 - 19422339
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagcg 154  Q
    |||||||||| |||||||||||||||||  |||||||| |||| ||||||||||||||    
T  19422396 ctttattatatcttttgttatagaaataacttatacataagcatttatatgataagcg 19422339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 4191706 - 4191663
Alignment:
Q  109 cttttgttatagaaatagattatacat-agcacttatatgataa 151  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  4191706 cttttgttatagaaatagcttatacataagcacttatatgataa 4191663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 2980575 - 2980617
Alignment:
Q  110 ttttgttatagaaatagattatacat-agcacttatatgataa 151  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  2980575 ttttgttatagaaatagcttatacataagcacttatatgataa 2980617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 32724097 - 32724037
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagcgttt 157  Q
    ||||||| || ||||||| |||||||||||||| |||| |||||| |||||| ||||||||    
T  32724097 ctttattttatcttttgtaatagaaatagattagacataagcactgatatgagaagcgttt 32724037  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 41050663 - 41050619
Alignment:
Q  109 cttttgttatagaaatagattataca-tagcacttatatgataag 152  Q
    |||||||||||||||||| ||||||| || |||||||||||||||    
T  41050663 cttttgttatagaaatagtttatacattaacacttatatgataag 41050619  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 47970285 - 47970245
Alignment:
Q  109 cttttgttatagaaatagattatacat-agcacttatatga 148  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  47970285 cttttgttatagaaatagcttatacataagcacttatatga 47970245  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 41028954 - 41029004
Alignment:
Q  109 cttttgttatagaaatagattatacat-agcacttatatgataagcgttta 158  Q
    |||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  41028954 cttttgttatagaaatagcttatacataagcacttatatgataagcattta 41029004  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 34759631 - 34759675
Alignment:
Q  110 ttttgttatagaaatagattatacatagcacttatatgataagcg 154  Q
    ||||| ||||||||||| |||||||||  ||||||||||||||||    
T  34759631 ttttgatatagaaatagcttatacataagacttatatgataagcg 34759675  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 44374736 - 44374792
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacata-gcacttatatgataagc 153  Q
    ||||||| || ||||||||| ||| |||| ||||||||| |||||||||||||||||    
T  44374736 ctttattttatcttttgttaaagatatagcttatacataagcacttatatgataagc 44374792  T

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Target: scaffold0654 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 6741 - 6784
Alignment:
Q  110 ttttgttatagaaatagattatacat-agcacttatatgataag 152  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  6741 ttttgttatagaaatagtttatacataagcacttatatgataag 6784  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 116660 - 116703
Alignment:
Q  110 ttttgttatagaaatagattatacat-agcacttatatgataag 152  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  116660 ttttgttatagaaatagtttatacataagcacttatatgataag 116703  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 2514680 - 2514618
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagcgtttat 159  Q
    ||||||| || ||||| |||||||||||| |||||||| |||||||| ||||||||| |||||    
T  2514680 ctttattttatcttttattatagaaatagcttatacataagcacttacatgataagcatttat 2514618  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 31668789 - 31668831
Alignment:
Q  110 ttttgttatagaaatagattatacat-agcacttatatgataa 151  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  31668789 ttttgttatagaaatagcttatacataagcacttatatgataa 31668831  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 3169348 - 3169397
Alignment:
Q  109 cttttgttatagaaatagattatacat-agcacttatatgataagcgttt 157  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||| ||||    
T  3169348 cttttgttatagaaataggttacacataagcacttatatgataagtgttt 3169397  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 29249440 - 29249391
Alignment:
Q  110 ttttgttatagaaatagattatacata-gcacttatatgataagcgttta 158  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||| ||||    
T  29249440 ttttgttatagaaatagctgatacataagcacttatatgataagcattta 29249391  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 29958002 - 29958054
Alignment:
Q  98 ctttattatagcttttgttatagaaatagattatacatagcacttatatgata 150  Q
    ||||||| || ||||||||||| ||||||  ||||||||||||||| ||||||    
T  29958002 ctttattttaccttttgttataaaaatagcatatacatagcacttagatgata 29958054  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 871012 - 870966
Alignment:
Q  109 cttttgttatagaaatagattatacat-agcacttatatgataagcg 154  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||||    
T  871012 cttttgttataaaaatagtttatacataagcacttatatgataagcg 870966  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 13037831 - 13037791
Alignment:
Q  109 cttttgttatagaaatagattatacat-agcacttatatga 148  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  13037831 cttttgttatagaaatagcttatacataagcacttatatga 13037791  T

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