View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5873_high_11 (Length: 292)
Name: NF5873_high_11
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5873_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 26849178 - 26849458
Alignment:
| Q |
1 |
gatttaccacgaccctttttggaagcaaactcatttgtagacaaagtgaatcctggtggtgttgttagtattggtgttgttgttttaacaatcttcttgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26849178 |
gatttaccacgaccctttttggaagcaaactcatttgtagacaaagtgaatcctggtggtgatgttagtattggtgttgttgttttaacaatcttcttgt |
26849277 |
T |
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| Q |
101 |
aacttggatttaggtttccatcagcatcatattttcttggtctacctctctttttcttaccaaacaaatccaaacttcctggtgttgttgttgatgttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
26849278 |
aacttggatttaggtttccatcagcatcatattttcttggtctacctctctttttcttaccaaacaaatccaaacttcctggtgttgttgttgttggtgt |
26849377 |
T |
|
| Q |
201 |
gactgttggtgcttctagagcaactattgatgttccaatagtagttacaatactgtttccaacacttatgttcatgttcat |
281 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26849378 |
gactgttggtgcttctaaagcaactattgatgttccaatagtagttacaatactgtttccaacacttatgttcatgttcat |
26849458 |
T |
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