View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5873_high_2 (Length: 679)

Name: NF5873_high_2
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5873_high_2
NF5873_high_2
[»] chr6 (2 HSPs)
chr6 (111-666)||(10796950-10797505)
chr6 (9-119)||(10796293-10796403)
[»] chr4 (7 HSPs)
chr4 (111-666)||(50078540-50079095)
chr4 (274-531)||(50070300-50070557)
chr4 (9-119)||(50077883-50077993)
chr4 (9-119)||(49106913-49107023)
chr4 (35-119)||(50112144-50112228)
chr4 (556-589)||(50070604-50070637)
chr4 (231-259)||(50069988-50070016)
[»] chr2 (6 HSPs)
chr2 (296-367)||(13501504-13501575)
chr2 (39-106)||(43849695-43849762)
chr2 (296-367)||(13515307-13515378)
chr2 (302-342)||(13541874-13541914)
chr2 (302-367)||(13485788-13485853)
chr2 (302-367)||(13509549-13509614)


Alignment Details
Target: chr6 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 111 - 666
Target Start/End: Original strand, 10796950 - 10797505
Alignment:
Q  111 tattacttggatagtgatttcatttgtattaatttattcattgatgaagtgagatacaacataaacatcacaaatctcccagttcaaaagtaagaaaaga 210  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10796950 tattatttggatagtgatttcatttgtattaatttattcattgatgaagtgagatacaacataaacatcacaaatctcccagttcaaaagtaagaaaaga 10797049  T
Q  211 aactgacaagaaaaaactttattacattggaagattaagaagacacaaaaacaactagcaagcacttggtaaattggaggatggattagttgtaattagg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10797050 aactgacaagaaaaaactttattacattggaagattaagaagacacaaaaacaactagcaagcacttggtaaattggaggatggattagttgtaattagg 10797149  T
Q  311 attggccaaaacataaccctcaatggccttgaaaagagcatcacccttggctttgccttcctcaacctccttttcaattggcttagcatctcctttggtt 410  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10797150 attggccaaaacataaccctcaatggccttgaaaagagcatcccccttggctttgccttcctcaacctccttttcaattggcttagcatctcctttggtt 10797249  T
Q  411 tggtatttaacggtcgtctttccaatagatcctccatttgcgccttcaaccaatttcgcttcaaatgatatcttttcgactgtctctggcaacccgactc 510  Q
    ||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10797250 tggtatttaactgtcgtctttccaacagaccctccatttgagccttcaaccaatttcgcttcaaatgatatcttttcgactgtctctggcaacccgactc 10797349  T
Q  511 ctccaactatactatagttatatcccaagtttgcttcatcaattgcatcaatttggtgcaacacatacaaggtttgtcctcctgcagacatatatgtttg 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10797350 ctccaactatactatagttatatcccaagtttgcttcatcaattgcatcaatttggtgcaacacatacaaggtttgtcctcctgcagacatatatg-ttg 10797448  T
Q  611 gttaatcaataacatnnnnnnncatacggtac-ttttgtatagaaaatgtgtttact 666  Q
     || |||||||||||       |||| | ||| ||||||||||||||||||||||||    
T  10797449 cttcatcaataacataaaaaaacatatgatacattttgtatagaaaatgtgtttact 10797505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 10796293 - 10796403
Alignment:
Q  9 attatactaactatgagttttgagtttgaaaagtttaaggctacgttcataatcagggaattcacttcagaacttgtgattcttttatgctacaaaattc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10796293 attatactaactatgagttttgagtttgaaaagtttaaggctacgttcataatcagggaattcacttcagaacttgtgattcttttatgctacaaaattc 10796392  T
Q  109 tctattacttg 119  Q
    |||||||||||    
T  10796393 tctattacttg 10796403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 111 - 666
Target Start/End: Original strand, 50078540 - 50079095
Alignment:
Q  111 tattacttggatagtgatttcatttgtattaatttattcattgatgaagtgagatacaacataaacatcacaaatctcccagttcaaaagtaagaaaaga 210  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50078540 tattatttggatagtgatttcatttgtattaatttattcattgatgaagtgagatacaacataaacatcacaaatctcccagttcaaaagtaagaaaaga 50078639  T
Q  211 aactgacaagaaaaaactttattacattggaagattaagaagacacaaaaacaactagcaagcacttggtaaattggaggatggattagttgtaattagg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50078640 aactgacaagaaaaaactttattacattggaagattaagaagacacaaaaacaactagcaagcacttggtaaattggaggatggattagttgtaattagg 50078739  T
Q  311 attggccaaaacataaccctcaatggccttgaaaagagcatcacccttggctttgccttcctcaacctccttttcaattggcttagcatctcctttggtt 410  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50078740 attggccaaaacataaccctcaatggccttgaaaagagcatcccccttggctttgccttcctcaacctccttttcaattggcttagcatctcctttggtt 50078839  T
Q  411 tggtatttaacggtcgtctttccaatagatcctccatttgcgccttcaaccaatttcgcttcaaatgatatcttttcgactgtctctggcaacccgactc 510  Q
    ||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50078840 tggtatttaactgtcgtctttccaacagaccctccatttgagccttcaaccaatttcgcttcaaatgatatcttttcgactgtctctggcaacccgactc 50078939  T
Q  511 ctccaactatactatagttatatcccaagtttgcttcatcaattgcatcaatttggtgcaacacatacaaggtttgtcctcctgcagacatatatgtttg 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  50078940 ctccaactatactatagttatatcccaagtttgcttcatcaattgcatcaatttggtgcaacacatacaaggtttgtcctcctgcagacatatatg-ttg 50079038  T
Q  611 gttaatcaataacatnnnnnnncatacggtac-ttttgtatagaaaatgtgtttact 666  Q
     || |||||||||||       |||| | ||| ||||||||||||||||||||||||    
T  50079039 cttcatcaataacataaaaaaacatatgatacattttgtatagaaaatgtgtttact 50079095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 274 - 531
Target Start/End: Original strand, 50070300 - 50070557
Alignment:
Q  274 acttggtaaattggaggatggattagttgtaattaggattggccaaaacataaccctcaatggccttgaaaagagcatcacccttggctttgccttcctc 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  50070300 acttggtaaattggaggatggattagttgtaattaggattggccaaaacataaccctcaatggccttgaaaagagcatcccccttggctttgccttcctc 50070399  T
Q  374 aacctccttttcaattggcttagcatctcctttggtttggtatttaacggtcgtctttccaatagatcctccatttgcgccttcaaccaatttcgcttca 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  50070400 aacctccttttcaattggcttagcatctcctttggtttggtatttaacggtcgtctttccaatagaccctccatttgagccttcaaccaatttcgcttca 50070499  T
Q  474 aatgatatcttttcgactgtctctggcaacccgactcctccaactatactatagttat 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50070500 aatgatatcttttcgactgtctctggcaacccgactcctccaactatactatagttat 50070557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 50077883 - 50077993
Alignment:
Q  9 attatactaactatgagttttgagtttgaaaagtttaaggctacgttcataatcagggaattcacttcagaacttgtgattcttttatgctacaaaattc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50077883 attatactaactatgagttttgagtttgaaaagtttaaggctacgttcataatcagggaattcacttcagaacttgtgattcttttatgctacaaaattc 50077982  T
Q  109 tctattacttg 119  Q
    |||||||||||    
T  50077983 tctattacttg 50077993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 49106913 - 49107023
Alignment:
Q  9 attatactaactatgagttttgagtttgaaaagtttaaggctacgttcataatcagggaattcacttcagaacttgtgattcttttatgctacaaaattc 108  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||| |||||| ||||||| || |||||||||||||||||||    
T  49106913 attatactaactatgagttttgagtttgaaaagtgtaaggctactttcacaattagggaatttacttcataacttgtaatacttttatgctacaaaattc 49107012  T
Q  109 tctattacttg 119  Q
    ||  |||||||    
T  49107013 tccgttacttg 49107023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 50112228 - 50112144
Alignment:
Q  35 tgaaaagtttaaggctacgttcataatcagggaattcacttcagaacttgtgattcttttatgctacaaaattctctattacttg 119  Q
    |||| |||||||||||||||||| |||  |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  50112228 tgaagagtttaaggctacgttcacaatttgggaattcacttcataacttgtgattcttttatgctacaaaattctcttttacttg 50112144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 556 - 589
Target Start/End: Original strand, 50070604 - 50070637
Alignment:
Q  556 catcaatttggtgcaacacatacaaggtttgtcc 589  Q
    ||||||||||||||||||||||||||||||||||    
T  50070604 catcaatttggtgcaacacatacaaggtttgtcc 50070637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 231 - 259
Target Start/End: Original strand, 50069988 - 50070016
Alignment:
Q  231 attacattggaagattaagaagacacaaa 259  Q
    |||||||||||||||||||||||||||||    
T  50069988 attacattggaagattaagaagacacaaa 50070016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 13501575 - 13501504
Alignment:
Q  296 ttagttgtaattaggattggccaaaacataaccctcaatggccttgaaaagagcatcacccttggctttgcc 367  Q
    ||||||||||| |||||| ||||||   |||||||||| ||||||||||||| |||||||||| ||||||||    
T  13501575 ttagttgtaatcaggattagccaaacagtaaccctcaagggccttgaaaagaccatcacccttagctttgcc 13501504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 43849762 - 43849695
Alignment:
Q  39 aagtttaaggctacgttcataatcagggaattcacttcagaacttgtgattcttttatgctacaaaat 106  Q
    ||||| ||||||||||||| ||||||| ||||||||||| || ||||||||||||||  |||||||||    
T  43849762 aagttgaaggctacgttcacaatcaggaaattcacttcataatttgtgattcttttacactacaaaat 43849695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 13515378 - 13515307
Alignment:
Q  296 ttagttgtaattaggattggccaaaacataaccctcaatggccttgaaaagagcatcacccttggctttgcc 367  Q
    ||||||||||| |||||| ||||||   |||||||| || |||||||||||| |||||||||| ||||||||    
T  13515378 ttagttgtaatcaggattagccaaacagtaaccctctatagccttgaaaagaccatcacccttagctttgcc 13515307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 13541914 - 13541874
Alignment:
Q  302 gtaattaggattggccaaaacataaccctcaatggccttga 342  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  13541914 gtaattagggtttgccaaaacataaccctcaatggccttga 13541874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 13485853 - 13485788
Alignment:
Q  302 gtaattaggattggccaaaacataaccctcaatggccttgaaaagagcatcacccttggctttgcc 367  Q
    ||||| |||||| |||||||| ||||| ||||  |||||||||||| |||||||| | ||||||||    
T  13485853 gtaatcaggatttgccaaaacgtaaccttcaagagccttgaaaagaccatcacccctagctttgcc 13485788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 13509614 - 13509549
Alignment:
Q  302 gtaattaggattggccaaaacataaccctcaatggccttgaaaagagcatcacccttggctttgcc 367  Q
    ||||| |||||| |||||||||||||| ||||  || ||||||||| |||||||| | ||||||||    
T  13509614 gtaatcaggatttgccaaaacataaccttcaagagctttgaaaagaccatcacccctagctttgcc 13509549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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