View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5873_high_3 (Length: 523)
Name: NF5873_high_3
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5873_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 271 - 505
Target Start/End: Complemental strand, 35254835 - 35254601
Alignment:
| Q |
271 |
gtaaattgaattgtagaaagttatcagaaatggttatgtgagtagattaagtgaaattaattaatgattgaaacaaacatgtccctgttttatcagttac |
370 |
Q |
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| T |
35254835 |
gtaaattgaattgtagaaagttatcagaaatggttatgtgagtagattaagtgaaattaattaatgatcgaaacaaacatgtccctgttttatcagttac |
35254736 |
T |
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| Q |
371 |
tatttaagtgacagaatttattcctacgttttaggaatgaacagaattagaatattaattgtaattgtaataattaagaaaagaagagttaaagacctcg |
470 |
Q |
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| T |
35254735 |
tatttaagtgacagaatttattcctacgttttaggaatgaacagaattagaatattaattgtaattgtaataattaagaaaagaagagttaaagacctcg |
35254636 |
T |
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| Q |
471 |
ggagtggcgcggggatagtgaataccggcggagat |
505 |
Q |
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| T |
35254635 |
ggagtggcgcggggatagtgaataccggcggagat |
35254601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 35255095 - 35254854
Alignment:
| Q |
1 |
gttcaagcatattaattaaataaagaaaatacnnnnnnnngaacaagtaaataaagaaaatactattcggttgaagcagaagataaggctgactgccaag |
100 |
Q |
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| T |
35255095 |
gttcaagcatattaattaaataaagaaaatacttttttttgaacaagtaaataaagaaaatactattcggttgaagcagaagataaggctgactgccaag |
35254996 |
T |
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| Q |
101 |
atagtaaggagaaatataaattttgacctgtcctttaacaggctggtgcccattccaaaacacataagtttcgattacatctacaccaccttccttggcc |
200 |
Q |
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| T |
35254995 |
atagtaaggagaaatataaattttgacctgtcctttaacaggctggtgcccattccaaaacacataagtttcgattacatctacaccaccttccttggcc |
35254896 |
T |
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| Q |
201 |
tttgctatgagatcaggccacatctaaaatgacatgaaatac |
242 |
Q |
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| T |
35254895 |
tttgctatgagatcaggccacatctaaaatgacatgaaatac |
35254854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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