View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5873_high_7 (Length: 389)
Name: NF5873_high_7
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5873_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 30001034 - 30001382
Alignment:
| Q |
20 |
ggattcggataggcgtgatacaggttgttgtgcaattggttcaagggatcatgaagtggaggaagagtatcaattaaaattggctttggagttgagtgca |
119 |
Q |
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| T |
30001034 |
ggattcggatagacatgatacgggttgttgtgcaattggttcaagggatcatgaagtggaggaagagtatcaattaaaattggctttggagttgagtgca |
30001133 |
T |
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| Q |
120 |
aaggaggatcctgaagctgtgcagattgaagctgtgaagcagattagtttggggtcttgtgatcctgataatacaccagctgaaattgtggcatacagat |
219 |
Q |
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| T |
30001134 |
aaggaggatcctgaagctgtgcagattgaagctgtgaagcagattagtttggggtcttgtgatcctgataatacaccagctgaaattgtggcatacagat |
30001233 |
T |
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| Q |
220 |
actgggtgagttactttgttcattttaagcacattgactttaggttgaggatattggaacttggaagatataagtttcaagtttgattgttatgttattc |
319 |
Q |
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| T |
30001234 |
actgggtgagttactttgttcattttaagcacattgactttaggttgaggatattggaacttggaagatat-agtttcaagtttgattgttatgttattc |
30001332 |
T |
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| Q |
320 |
ttaaagaaatatgagtcttttagaagtttgtggagaatttcagatgtgtt |
369 |
Q |
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| T |
30001333 |
ttaaagaaatatgagtcttttagaagtttgcggagaatttcagatgtgtt |
30001382 |
T |
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Back To:
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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 58 - 226
Target Start/End: Original strand, 45199193 - 45199361
Alignment:
| Q |
58 |
gttcaagggatcatgaagtggaggaagagtatcaattaaaattggctttggagttgagtgcaaaggaggatcctgaagctgtgcagattgaagctgtgaa |
157 |
Q |
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| T |
45199193 |
gttcaagggatcctgaagtggaagaagaatatcaaattcagcttgctttagagctgagtgcaaaggaggatcccgaggctgtacagattgaagctgttaa |
45199292 |
T |
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| Q |
158 |
gcagattagtttggggtcttgtgatcctgataatacaccagctgaaattgtggcatacagatactgggt |
226 |
Q |
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| T |
45199293 |
gcaaatcagtttgggatcttgtcaccctgataatacaccagctgaagttgtcgcataccgatactgggt |
45199361 |
T |
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