View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5873_high_8 (Length: 386)

Name: NF5873_high_8
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5873_high_8
NF5873_high_8
[»] chr4 (3 HSPs)
chr4 (14-343)||(12818956-12819297)
chr4 (37-240)||(32055685-32055891)
chr4 (14-123)||(55463394-55463502)
[»] chr8 (2 HSPs)
chr8 (24-123)||(39141262-39141361)
chr8 (14-123)||(33075544-33075653)
[»] chr7 (2 HSPs)
chr7 (15-119)||(47273218-47273322)
chr7 (51-104)||(46374297-46374350)
[»] chr1 (1 HSPs)
chr1 (33-122)||(29315178-29315267)
[»] chr3 (5 HSPs)
chr3 (33-104)||(22138091-22138162)
chr3 (33-123)||(32876607-32876697)
chr3 (43-104)||(18942342-18942403)
chr3 (14-79)||(21964230-21964295)
chr3 (14-79)||(21986666-21986731)
[»] chr2 (3 HSPs)
chr2 (47-104)||(40796053-40796110)
chr2 (76-116)||(8804645-8804685)
chr2 (14-110)||(41794813-41794909)
[»] scaffold0034 (1 HSPs)
scaffold0034 (83-151)||(24475-24543)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 343
Target Start/End: Original strand, 12818956 - 12819297
Alignment:
Q  14 atattagtgcgattaaatcttcgtaagctttcattatttagtagcaaacttagttgtttgctttagacattcataagatttgacctatttaatagtaagt 113  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |||    
T  12818956 atattagtgtgattaaatcttcgtaagctttcattatttagtagcaaatttagttgtgtgctttagacattcataagatttgacctatttagtagtgagt 12819055  T
Q  114 ttataggtgtaattagatcttattgttaaatagactttaa------------gatttcatcggacctttaaaaatatatcaggccttaaaaattagcata 201  Q
    ||||| ||||| |||||||||||||| ||||||||||| |            ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12819056 ttataagtgtagttagatcttattgtaaaatagacttttaaacagactttcagatttcatcggacctttaaaaatatatcaggccttaaaaattagcata 12819155  T
Q  202 taatgggtaatagatcatactcaaatctataattttttaacctggtcaagattaatccttacaaagtccggtccaaccgcgtccattttaccctgtttgt 301  Q
    |||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| || || ||||    
T  12819156 taatgggtaatagatcatgctcagatctataattttttaacctggttaagattaatccttacaaagtccggtccaacctcatccattttcccatgcttgt 12819255  T
Q  302 attctctttgcctttaataatattttaactaaaaatctaatt 343  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  12819256 attctctttgcatttaataatattttaactaaaaatctaatt 12819297  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 32055685 - 32055891
Alignment:
Q  37 taagctttcattatttagtagcaaacttagttgtttgctttagacattcataagatttgacctatttaatagtaagtttataggtgtaattagatcttat 136  Q
    |||| |||||||||||||||||| ||||| |  | || ||| | |||||| ||| ||||||||||||| ||||| | ||||||  ||   |||| ||||     
T  32055685 taagatttcattatttagtagcagacttattcttgtgtttttggcattcacaagctttgacctatttagtagtaggcttatagaggttgctagaccttag 32055784  T
Q  137 tgttaaatagactttaagatttcatcggacctttaaaaa---tatatcaggccttaaaaattagcatataatgggtaatagatcatactcaaatctataa 233  Q
    |||||||||| |||| ||  ||||||| |||||||||||   |  ||||| |||||||||| || |||| | ||||||||| ||| |||||   ||||||    
T  32055785 tgttaaataggctttcaggcttcatcgaacctttaaaaaggcttgatcagaccttaaaaatgagtatatgacgggtaataggtcagactcaggcctataa 32055884  T
Q  234 tttttta 240  Q
    |||||||    
T  32055885 tttttta 32055891  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 55463394 - 55463502
Alignment:
Q  14 atattagtgcgattaaatcttcgtaagctttcattatttagtagcaaacttagttgtttgctttagacattcataagatttgacctatttaatagtaagt 113  Q
    ||||||||| ||||| | ||||||| | ||| ||||||||||| ||||| || |  | |||||||||| |||||||  |||| |||||||| ||| | ||    
T  55463394 atattagtgtgattagaccttcgtaggattttattatttagtaacaaacctattcatgtgctttagaccttcataa-ttttggcctatttagtagcaggt 55463492  T
Q  114 ttataggtgt 123  Q
    ||||||||||    
T  55463493 ttataggtgt 55463502  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 39141262 - 39141361
Alignment:
Q  24 gattaaatcttcgtaagctttcattatttagtagcaaacttagttgtttgctttagacattcataagatttgacctatttaatagtaagtttataggtgt 123  Q
    ||||||| ||| ||||| |||| ||||||||||||| | ||| |||| ||||||||   |||||||| ||||||||||||||||||| | ||||||||||    
T  39141262 gattaaacctttgtaagatttctttatttagtagcagatttatttgtgtgctttaggacttcataagttttgacctatttaatagtaggcttataggtgt 39141361  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 33075544 - 33075653
Alignment:
Q  14 atattagtgcgattaaatcttcgtaagctttcattatttagtagcaaacttagttgtttgctttagacattcataagatttgacctatttaatagtaagt 113  Q
    ||||||||| |||||||||||| ||||  ||  ||||||||||| |  | || |||| |||||||| | ||||| || |||||||| |||| ||||| |     
T  33075544 atattagtgtgattaaatcttcataagtattttttatttagtagaagtcctatttgtatgctttaggccttcatgagttttgacctttttagtagtaggc 33075643  T
Q  114 ttataggtgt 123  Q
    ||||||||||    
T  33075644 ttataggtgt 33075653  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 47273218 - 47273322
Alignment:
Q  15 tattagtgcgattaaatcttcgtaagctttcattatttagtagcaaacttagttgtttgctttagacattcataagatttgacctatttaatagtaagtt 114  Q
    |||||||| ||||||||||||||||| |||| ||||||||||||| |  || | || ||||||||| ||||||||| |||||  | |||| ||||| |||    
T  47273218 tattagtgtgattaaatcttcgtaagatttcgttatttagtagcagatctattcgtatgctttagatattcataagttttgatatgtttagtagtaggtt 47273317  T
Q  115 tatag 119  Q
    |||||    
T  47273318 tatag 47273322  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 46374350 - 46374297
Alignment:
Q  51 ttagtagcaaacttagttgtttgctttagacattcataagatttgacctattta 104  Q
    |||||||||||| || |||| |||||||||| |||||||| |||| ||||||||    
T  46374350 ttagtagcaaacatatttgtgtgctttagaccttcataagttttggcctattta 46374297  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 29315178 - 29315267
Alignment:
Q  33 ttcgtaagctttcattatttagtagcaaacttagttgtttgctttagacattcataagatttgacctatttaatagtaagtttataggtg 122  Q
    ||||||||  ||||||||||||||||| ||||| | || ||||||||   |||||||| |||| |||||||| ||||||| |||||||||    
T  29315178 ttcgtaagacttcattatttagtagcagacttactcgtgtgctttaggttttcataagttttggcctatttagtagtaagcttataggtg 29315267  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 22138091 - 22138162
Alignment:
Q  33 ttcgtaagctttcattatttagtagcaaacttagttgtttgctttagacattcataagatttgacctattta 104  Q
    ||||||||  |||||||||||||||||||| || |||| |||||||||| || ||||| |||| ||||||||    
T  22138091 ttcgtaagaattcattatttagtagcaaacatatttgtgtgctttagaccttaataagttttggcctattta 22138162  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 32876607 - 32876697
Alignment:
Q  33 ttcgtaagctttcattatttagtagcaaacttagttgtttgctttagacattcataagatttgacctatttaatagtaagtttataggtgt 123  Q
    |||||||| |||| ||||||||||||| || || ||||  ||||||| | |||||||| || |||||||||| ||||| | ||||||||||    
T  32876607 ttcgtaagatttcgttatttagtagcagacatatttgtgcgctttaggccttcataagtttagacctatttagtagtaggcttataggtgt 32876697  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 18942403 - 18942342
Alignment:
Q  43 ttcattatttagtagcaaacttagttgtttgctttagacattcataagatttgacctattta 104  Q
    |||||||||||||||||||| || |||| |||||||| | || ||||| |||| ||||||||    
T  18942403 ttcattatttagtagcaaacatatttgtgtgctttaggccttaataagttttggcctattta 18942342  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 21964230 - 21964295
Alignment:
Q  14 atattagtgcgattaaatcttcgtaagctttcattatttagtagcaaacttagttgtttgctttag 79  Q
    ||||| ||| ||||| | |||||||||  |||||||||||||||||||| || |||| ||||||||    
T  21964230 atattggtgtgattagaccttcgtaagaattcattatttagtagcaaacatatttgtgtgctttag 21964295  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 21986666 - 21986731
Alignment:
Q  14 atattagtgcgattaaatcttcgtaagctttcattatttagtagcaaacttagttgtttgctttag 79  Q
    ||||| ||| ||||| | |||||||||  |||||||||||||||||||| || |||| ||||||||    
T  21986666 atattggtgtgattagaccttcgtaagaattcattatttagtagcaaacatatttgtgtgctttag 21986731  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 40796110 - 40796053
Alignment:
Q  47 ttatttagtagcaaacttagttgtttgctttagacattcataagatttgacctattta 104  Q
    |||| |||||||| ||||| |||| | |||||| ||||||||||||||||||||||||    
T  40796110 ttatctagtagcagacttaattgtgttctttaggcattcataagatttgacctattta 40796053  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 8804685 - 8804645
Alignment:
Q  76 ttagacattcataagatttgacctatttaatagtaagttta 116  Q
    |||||| |||||||| ||||||||||||||||||| |||||    
T  8804685 ttagaccttcataagttttgacctatttaatagtaggttta 8804645  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 41794909 - 41794813
Alignment:
Q  14 atattagtgcgattaaatcttcgtaagctttcattatttagtagcaaacttagttgtttgctttagacattcataagatttgacctatttaatagta 110  Q
    ||||||||| |||||||  ||| |||| |||  ||||||| ||||| ||||| |||| |||||||| | || ||||| ||||  |||||||||||||    
T  41794909 atattagtgtgattaaactttcctaagattttgttatttaatagcagacttatttgtgtgctttagtcctttataagttttgggctatttaatagta 41794813  T

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Target: scaffold0034 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 24475 - 24543
Alignment:
Q  83 ttcataagatttgacctatttaatagtaagtttataggtgtaattagatcttattgttaaatagacttt 151  Q
    |||||||| |||| |||||||||||||| ||||||||||||  ||||| |||| ||| |||||| ||||    
T  24475 ttcataagttttggcctatttaatagtaggtttataggtgttgttagaccttagtgtaaaataggcttt 24543  T

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