View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5873_low_1 (Length: 851)
Name: NF5873_low_1
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5873_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 767; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 767; E-Value: 0
Query Start/End: Original strand, 1 - 833
Target Start/End: Original strand, 39126165 - 39126996
Alignment:
| Q |
1 |
ttagaatatctaaaagtcttaaaaaccttcacaataattatttggaaaaagataattttattcacagtaattatgaattttccatgtcaatttaaattaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39126165 |
ttagaatatctaaaagtcttaaaaaccttcacaataattatttggaaaaagataattttattcacagtaattatgaattttccatgtcaatttaaattaa |
39126264 |
T |
|
| Q |
101 |
ctttgagatctcaattttttaaccacttataaaaaacttttccgtgaacattgtaagtttagaatgattttttacaaaccaataaatcataaatattatt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39126265 |
ctttgagatctcaattttttaaccacttataaaaaacttttccgtgaacattgtaagtttagaatgattttttacaaaccaataaatcataaatattatt |
39126364 |
T |
|
| Q |
201 |
caattgctcaaaatatattcaagacatttggcatgctgcattaatgatcaacggtagcaatttctggacaatgat-----taatcagcttatcactaata |
295 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39126365 |
caattgctcaaaatatattcaagacatttggcatgctgcattaatgatcaacggtagcaatttctggacaatgatgtacttaatcagcttatcactaatg |
39126464 |
T |
|
| Q |
296 |
aattatcactgaatcagctaatggcctagttttgattataatacacacattacagtttctcacataacatttcttcggtgaatctgttggaaagtctttc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39126465 |
aattatcactgaatcagctaatggcctagttttgattataatacacacattacagtttctcacataacatttcttcggtgaatctgttggaaagtctttc |
39126564 |
T |
|
| Q |
396 |
tgctgtttgtaactttcatccaacttcttagatcgtcctttttccgtttcacaatttttgcagcatttcctgggctagaattcagtcaatattgtaatat |
495 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39126565 |
tgctgtttgtaactttcatccaacttcttagatcgtcctttttccatttcacaatttttgcagcatttcctgggctagaattcagtcaatattgtaatat |
39126664 |
T |
|
| Q |
496 |
actgttactagcagcatgtattaggcatctcttactgatacattactggtgatacaactattggtgcaagttctgtctggaaacaatggctcctggatac |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39126665 |
actgttactagcagcatgtattaggcatctcttactgatacattactggtggtaccactattggtgcaagttctgtctggaaacaatggctcctggatac |
39126764 |
T |
|
| Q |
596 |
cactattggtgccagtgccagcacacttgacaggacattcccattcccaagcaacaatggtgaatgttttagctttgagtttgttggtaatttcactcac |
695 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39126765 |
cactattg------gtgccagcacacttgacaggacactcccattcccaagcaacaatggtgaatgttttagctttgagtttgttggtaatttcactcac |
39126858 |
T |
|
| Q |
696 |
agcagcgagcattttctttccactccaaatcaataacaagccgcaaacacaatttatcaaagaacgacagggtctctgttgttgaatacgaccaagatag |
795 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39126859 |
agcagcgagcattttctttccaccccaaatcaataacaagccgcaaacacaatttagcaaagaacgacagggtctctgttgttgaatacgaccaagatag |
39126958 |
T |
|
| Q |
796 |
ttaccaaagcaccaaatctcaatcttaccactcatcag |
833 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39126959 |
ttaccaaagcaccaaatctcaatcttaccactcatcag |
39126996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 717
Target Start/End: Complemental strand, 34705210 - 34705155
Alignment:
| Q |
662 |
ttttagctttgagtttgttggtaatttcactcacagcagcgagcattttctttcca |
717 |
Q |
| |
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||||||||||||| |||| |||| ||||||||||||||| |||||||||| |||| |
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|
| T |
34705210 |
ttttagctttgagcctgttagtaacttcactcacagcagcaagcattttctctcca |
34705155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 824
Target Start/End: Complemental strand, 11593176 - 11593123
Alignment:
| Q |
772 |
tgttgttgaatacgaccaagatagttaccaaagcacc-aaatctcaatcttacc |
824 |
Q |
| |
|
|||||||||||| || |||||| ||||||||| |||| |||||||||||||||| |
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|
| T |
11593176 |
tgttgttgaatatgatcaagatggttaccaaaacaccaaaatctcaatcttacc |
11593123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 824
Target Start/End: Original strand, 11644943 - 11644996
Alignment:
| Q |
772 |
tgttgttgaatacgaccaagatagttaccaaagcacc-aaatctcaatcttacc |
824 |
Q |
| |
|
|||||||||||| || |||||| ||||||||| |||| |||||||||||||||| |
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|
| T |
11644943 |
tgttgttgaatatgatcaagatggttaccaaaacaccaaaatctcaatcttacc |
11644996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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