View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5873_low_13 (Length: 282)
Name: NF5873_low_13
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5873_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 39126034 - 39125762
Alignment:
| Q |
1 |
atgaatgaataaaatctaaaataatattatgtccatgtcaaccttccactcnnnnnnnnnntccgtatcaaccttgagcaacaatccaaatgtgaaggac |
100 |
Q |
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| T |
39126034 |
atgaatgaataaaatctaaaataatattatgtccatgtcaaccttccactcaaaaaaaaaatccgtatcaaccttgagcaacaatccaaatgtgaaggac |
39125935 |
T |
|
| Q |
101 |
aacagctcacagccgcagaaagctaactaaatcgtagatcatgcctttcttattgatgtatatcgacgtcaagagcatatgaaaattatgtatgaataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39125934 |
aacagctcacagccgcagaaagctaactaaatcgtagatcatgcctttcttattgatgtatatcgacgtcaagagcatatgaaaattatgtatgaataat |
39125835 |
T |
|
| Q |
201 |
caagcatgagatggcatcatataagtaaattgtagatgtagagtttgtcatctgaaaggttccacaggttctg |
273 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39125834 |
caagcatgagatggtatcatataagtaaattgtagatgtagagtttgtcatctgaaaggttccactggttctg |
39125762 |
T |
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