View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5873_low_17 (Length: 225)
Name: NF5873_low_17
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5873_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 4021151 - 4020952
Alignment:
| Q |
7 |
ctttctatctaccacgacttcccaacacaagttttccatttcaagctttggtatactctgcgcaggaagtgttctcatgtgacaacaatataacaattgt |
106 |
Q |
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| T |
4021151 |
ctttctatctaccacgacttcccaaaacaaattttccatttcaagctttggtatactctgcgcaggaagtgttctcatgtgacaacaatataacaattgt |
4021052 |
T |
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| Q |
107 |
gtgctaattgagtattatcttttttaaatttcaatgaactttttgtctaatatgatttttctttcataaatatttggtgagaattagcctcatccaatgc |
206 |
Q |
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| T |
4021051 |
gtgctaattgggtattatcttttttaaatttcaatgaactttttgtctaatatgatttttctttcataaatatttggtgagaattagcctcatccaatgc |
4020952 |
T |
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