View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5873_low_4 (Length: 463)
Name: NF5873_low_4
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5873_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 43 - 459
Target Start/End: Original strand, 32535804 - 32536220
Alignment:
| Q |
43 |
cattgatccaccatcagtgtgagtccctttatagtttacgggtaaattttgagtactactcagaacattagtcatttaacaaaatttaaaactagattta |
142 |
Q |
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| T |
32535804 |
cattgatccaccatcagtgtgagtccctttatagtttatgggtaaattttgagtactactcagaacattagtcatttaacaaaatttaaaactagattta |
32535903 |
T |
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| Q |
143 |
tatcttgagataatannnnnnnnataaatatgaagtgaaaggatttaacatgtcttattttttagtactaatagtagtaaaaatatgcagaatcaagtat |
242 |
Q |
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| T |
32535904 |
tatcttgagataatattttttttataaatatgaagtgaaaggatttaacatgtcttattttttagtactaatagtagtaaaaatatgcagaatcaagtat |
32536003 |
T |
|
| Q |
243 |
gcagataaaggaagggtgtcagaaaggaatagagagccctcgtgaattgggttttgttttttgtttgatatcgggtaagtaaatggtgacgggtgagtgt |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32536004 |
gcagataaaggaagggtgtcagaaaggaatagagagccctcgtgaattgggttttgttttttgtttgatatcgggtaagtaaatggtgacgggtgagtgt |
32536103 |
T |
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| Q |
343 |
gctgtgatcacaactcagaactttgtacttccaaataattgctcccgcttacatcgctgaaccaactcaagcactcaactcaattatgtatgcagtttca |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32536104 |
gctgtgatcacaactcagaactttgtacttccaaataattgctcccgcttacatcgctgaaccaactcaagcactcaactcaattatgcatgcagtttca |
32536203 |
T |
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| Q |
443 |
attcagtataatttacc |
459 |
Q |
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|||||||||| |||||| |
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| T |
32536204 |
attcagtatactttacc |
32536220 |
T |
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