View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5873_low_5 (Length: 440)
Name: NF5873_low_5
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5873_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 43 - 425
Target Start/End: Complemental strand, 41379692 - 41379296
Alignment:
| Q |
43 |
tatcaagtgcagtgtgacacgattcctatgaggtcatcagagagaccaaaatccaaattaagatcgaaattctgtttaatcttgttggatttggcgtgtt |
142 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41379692 |
tatcaagtgcagcgtgacacgattcctgtgagctcatcagagagaccgaaatccaaattaagatcgaaattctgtttagtcttgttggatttggcgtgtt |
41379593 |
T |
|
| Q |
143 |
cgagatcggattcttgaacaacaaaagcatatgatgtgtctaagctaatggttggcatatcattagacatgattttactgccaaaatggtgtggtctgag |
242 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
41379592 |
cgagatcagattcttgaacaacaaaaacatatgaagtgtctaagctaatggttagcatatcattagacatgattttactaccaaaatgatgtggtctgag |
41379493 |
T |
|
| Q |
243 |
ggggaagtgactcacattacttaagcatatgatgtggggttcgattattgacttatgcgtaaga----------------atacataaccgttatatgcg |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || | |||||| ||||||||||| |
|
|
| T |
41379492 |
ggggaagtgactcacattacttaagcatatgatgtggggttcgactattgacttatgcgtaggaaatttcaccatttaatagacataatcgttatatgcg |
41379393 |
T |
|
| Q |
327 |
ctgaagatccttgaaagagtttgtctctgcagactgcagtttctaacgaattaggtgatacctagagaaaccaaaacacatattttgctttggtataat |
425 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41379392 |
ctgaagatcctcgaaagag--tgtctctgcagactacagtttctaacgaattaggtgatacctagagaaaccaaaacacatattttgctttggtataat |
41379296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University