View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5873_low_6 (Length: 434)
Name: NF5873_low_6
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5873_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 5 - 419
Target Start/End: Original strand, 44445739 - 44446146
Alignment:
| Q |
5 |
gaggagcagagagattgaactcaaatatatattgtgaccccaaaaacaagttaagtaaatttcattttgcatctttaagtgaaaaaatatcttaaagcat |
104 |
Q |
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| T |
44445739 |
gaggaccaaagagattgaactcaaatat----tgtgaccccaaaaacaagtttagtaaatttcattttgcatctttaagtgaaaaaatatcttaaagcat |
44445834 |
T |
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| Q |
105 |
aggagggccaatattattttcctatattccacaagatcattaattatggcctaccaagaaataaagaacttcaccagcaagtattacatgatcatcactt |
204 |
Q |
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| T |
44445835 |
aggagggccaatatt---ttcctatattccacaagatcattaattatggcctaccaagaaataaagaacttcaccagcaagtattacatgatcatcactt |
44445931 |
T |
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| Q |
205 |
tataaatagggaactaatcctttccaaacaacatatcaatccatttccataatcacttctcattcaccattaatttgatccatttatcttttgaaaccac |
304 |
Q |
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| T |
44445932 |
tataaatagggaactaatcctttccaaacaacatatcaatccatttccataatcacttctcattcaccattaatttgatccatttatcttttgaaaccac |
44446031 |
T |
|
| Q |
305 |
actatgtctgaagaagagaaccgtagccgtggcctcttccaccacaagaagcatgatgatgatgataataggccaatagacactgacagtggttacaaca |
404 |
Q |
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| T |
44446032 |
actatgtctgaagaagagaaccgtagccgtggcctcttccaccacaagaagcatgatgatgatgataataggccaatagacactgacagtggttacaaca |
44446131 |
T |
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| Q |
405 |
aaacatcatcatact |
419 |
Q |
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| T |
44446132 |
aaacatcatcatact |
44446146 |
T |
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