View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5873_low_9 (Length: 360)

Name: NF5873_low_9
Description: NF5873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5873_low_9
NF5873_low_9
[»] chr1 (3 HSPs)
chr1 (181-341)||(28425724-28425878)
chr1 (94-140)||(28425871-28425918)
chr1 (33-91)||(28425939-28425997)
[»] chr7 (1 HSPs)
chr7 (33-85)||(19243224-19243276)
[»] chr5 (1 HSPs)
chr5 (33-85)||(22705220-22705272)
[»] scaffold0243 (1 HSPs)
scaffold0243 (33-85)||(22067-22119)
[»] scaffold0020 (1 HSPs)
scaffold0020 (33-81)||(105596-105644)
[»] chr6 (1 HSPs)
chr6 (33-83)||(14778413-14778463)
[»] chr3 (1 HSPs)
chr3 (33-91)||(43098864-43098922)
[»] chr2 (1 HSPs)
chr2 (32-82)||(41829123-41829173)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 181 - 341
Target Start/End: Complemental strand, 28425878 - 28425724
Alignment:
Q  181 gcagcaacaaataatgtattggaatcaaaatatacatatatgtcatagacatggcaatacgatgggaatcccattacatatatagcgatagagaataact 280  Q
    ||||||||||||||||||||||||||||||||||      |||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||    
T  28425878 gcagcaacaaataatgtattggaatcaaaatata------tgtcatagacatagcaatacgatgggaatccaattacatatatagcgatggagaataact 28425785  T
Q  281 agagctgagaatcaaagcaagtaaactctatagttaatatatgggttgctggcagctcaaa 341  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  28425784 agagctgagaatcaaagcaagtaaactctatagtcaatatatgggttgttggcagctcaaa 28425724  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 28425918 - 28425871
Alignment:
Q  94 agcaccacaacagggaaaattaat-aaaacgaaagggacagcagcaac 140  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  28425918 agcaccacaacagggaaaattaataaaaacgaaaggggcagcagcaac 28425871  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 28425997 - 28425939
Alignment:
Q  33 ttaactttggagagcgaccacagctttgcaattggaatggagtagaacagccacggcaa 91  Q
    ||||||| |||||||  |||| || |||||||||||||||| |||||||||||||||||    
T  28425997 ttaacttcggagagcagccaccgccttgcaattggaatggaatagaacagccacggcaa 28425939  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 19243224 - 19243276
Alignment:
Q  33 ttaactttggagagcgaccacagctttgcaattggaatggagtagaacagcca 85  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  19243224 ttaactttggagagcaaccacagccttgcaattggaatggagtagaacagcca 19243276  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 22705272 - 22705220
Alignment:
Q  33 ttaactttggagagcgaccacagctttgcaattggaatggagtagaacagcca 85  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  22705272 ttaactttggagagcaaccacagccttgcaattggaatggagtagaacagcca 22705220  T

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Target: scaffold0243 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 22119 - 22067
Alignment:
Q  33 ttaactttggagagcgaccacagctttgcaattggaatggagtagaacagcca 85  Q
    |||| |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  22119 ttaattttggagagcaaccacagccttgcaattggaatggagtagaacagcca 22067  T

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Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 105596 - 105644
Alignment:
Q  33 ttaactttggagagcgaccacagctttgcaattggaatggagtagaaca 81  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  105596 ttaactttggagagcaaccacagccttgcaattggaatggagtagaaca 105644  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 14778413 - 14778463
Alignment:
Q  33 ttaactttggagagcgaccacagctttgcaattggaatggagtagaacagc 83  Q
    |||||||||||||||  |||| || |||||||||||||||| |||||||||    
T  14778413 ttaactttggagagcagccactgccttgcaattggaatggaatagaacagc 14778463  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 43098922 - 43098864
Alignment:
Q  33 ttaactttggagagcgaccacagctttgcaattggaatggagtagaacagccacggcaa 91  Q
    |||||||||||||||    || || |||||||||||||||| |||||||||||||||||    
T  43098922 ttaactttggagagcagttacggccttgcaattggaatggaatagaacagccacggcaa 43098864  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 41829123 - 41829173
Alignment:
Q  32 attaactttggagagcgaccacagctttgcaattggaatggagtagaacag 82  Q
    ||||||||||||||||  |||| || |||||||||||||||| ||||||||    
T  41829123 attaactttggagagcagccactgccttgcaattggaatggaatagaacag 41829173  T

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