View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5874-Insertion-2 (Length: 950)

Name: NF5874-Insertion-2
Description: NF5874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5874-Insertion-2
NF5874-Insertion-2
[»] chr3 (7 HSPs)
chr3 (9-369)||(17003086-17003446)
chr3 (760-950)||(17003442-17003634)
chr3 (815-950)||(45261453-45261588)
chr3 (815-950)||(35455396-35455531)
chr3 (857-939)||(40344894-40344979)
chr3 (880-944)||(36659280-36659347)
chr3 (818-938)||(25294782-25294904)
[»] chr8 (6 HSPs)
chr8 (815-950)||(1445443-1445581)
chr8 (864-939)||(2520102-2520180)
chr8 (880-939)||(16890253-16890315)
chr8 (885-947)||(2207864-2207928)
chr8 (887-944)||(30653623-30653683)
chr8 (857-939)||(8251337-8251422)
[»] chr7 (4 HSPs)
chr7 (872-944)||(20949168-20949243)
chr7 (880-950)||(41508190-41508263)
chr7 (864-944)||(12485372-12485455)
chr7 (864-944)||(12506804-12506887)
[»] chr1 (7 HSPs)
chr1 (857-950)||(9851771-9851871)
chr1 (858-948)||(28470025-28470113)
chr1 (858-939)||(31152536-31152618)
chr1 (864-936)||(25130217-25130292)
chr1 (880-939)||(28165110-28165172)
chr1 (857-944)||(31181014-31181103)
chr1 (857-939)||(31003547-31003631)
[»] chr6 (4 HSPs)
chr6 (858-939)||(12143682-12143766)
chr6 (857-924)||(180458-180526)
chr6 (873-938)||(2950132-2950199)
chr6 (874-924)||(34837129-34837180)
[»] chr2 (7 HSPs)
chr2 (814-950)||(21794926-21795065)
chr2 (857-944)||(38214209-38214299)
chr2 (864-950)||(39063563-39063652)
chr2 (857-950)||(38496563-38496659)
chr2 (857-944)||(40664331-40664421)
chr2 (857-950)||(16781351-16781447)
chr2 (864-914)||(21229611-21229662)
[»] chr4 (6 HSPs)
chr4 (857-950)||(18838841-18838938)
chr4 (864-924)||(31707321-31707382)
chr4 (864-944)||(47231542-47231624)
chr4 (874-924)||(44720561-44720612)
chr4 (885-939)||(27032239-27032295)
chr4 (864-901)||(34320861-34320898)
[»] scaffold0088 (1 HSPs)
scaffold0088 (864-950)||(51363-51452)
[»] chr5 (6 HSPs)
chr5 (857-898)||(5289014-5289055)
chr5 (864-924)||(6688907-6688968)
chr5 (880-950)||(11983567-11983639)
chr5 (880-950)||(2225670-2225743)
chr5 (866-904)||(36477867-36477905)
chr5 (880-945)||(18705094-18705162)
[»] scaffold0024 (1 HSPs)
scaffold0024 (857-948)||(154432-154526)


Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 369
Target Start/End: Original strand, 17003086 - 17003446
Alignment:
Q  9 aaacagactatattgttaaagcaggatgacacaaacattatactaatatttctaattttcaacttatttcatggaaataaagaaaagtatgaacctgtgt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17003086 aaacagactatattgttaaagcaggatgacacaaacattatactaatatttctaattttcaacttatttcatggaaataaagaaaagtatgaacctgtgt 17003185  T
Q  109 agaagttttattgtacttgtctcctatttcagtgatcttctttagcagtggttgaagctgcaaaacaaataaacacttgaggaaccaagtaatatcggta 208  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  17003186 agaagttttattgtatttctctcctatttcagtgatcttctttagcagtggttgaagctgcaaaacaaataaacatttgaggaaccaagtactatcggta 17003285  T
Q  209 tcattcattggatacggaaatttcagaaaagttgtacctttgttaggaattctggagtataaattctacctcgaggcccagatggaggatttcgtggagt 308  Q
    | ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17003286 taattcattagatacggaaatttcagaaaagttgtacctttgttaagaattctggagtataaattctacctcgaggcccagatggaggatttcgtggagt 17003385  T
Q  309 atactttccagtaagaacacctgcttaagataacgattttgcataaattttgcggctatta 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17003386 atactttccagtaagaacacctgcttaagataacgattttgcataaattttgcggctatta 17003446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 760 - 950
Target Start/End: Original strand, 17003442 - 17003634
Alignment:
Q  760 tattaagtgcttatatgaaaagtcatagtttaaggtattagtaacactaccataatactccctcgggtgcttattataagcaacaaaaccnnnnnnncat 859  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||         |||    
T  17003442 tattaagtgcttatatgaaaagtcataatttaaggtattaataacactaccataatactccctccggtgtttattataagcaacaaaataaaaaaaacat 17003541  T
Q  860 caataccaatgcattcattgattaatgtaactttttgaata-ttttacaaatataccctcat-aaaattgtgaaacattaaacacacccacta 950  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17003542 caatactaatgcattcattgattaatgtaactttttgaatatttttacaaatataccctcataaaaattgtgaaacattaaacacacccacta 17003634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 815 - 950
Target Start/End: Complemental strand, 45261588 - 45261453
Alignment:
Q  815 tactccctcgggtgcttattataagcaacaaaaccnnnnnnncatcaataccaatgcattcattgattaatgtaactttttgaatatttt-acaaatata 913  Q
    ||||||||| ||| |||||||||||||||||||||       |||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  45261588 tactccctccggtccttattataagcaacaaaaccaaaaaa-catcaaaaccaatgcattcattgattaatgtaactttttgaacatttttacaaatata 45261490  T
Q  914 ccctcataaaattgtgaaacattaaacacacccacta 950  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  45261489 ccctcaaaaaattgtgaaacattaaatacacccacta 45261453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 815 - 950
Target Start/End: Complemental strand, 35455531 - 35455396
Alignment:
Q  815 tactccctcgggtgcttattataagcaacaaaaccnnnnnnncatcaataccaatgcattcattgattaatgtaactttttgaatattt-tacaaatata 913  Q
    ||||| ||| ||| ||||||||||||||||||||        |||||| ||||||||||| ||||||||| |||||||||||||||||| ||||||||||    
T  35455531 tactcactccggtccttattataagcaacaaaac-taaaaaacatcaaaaccaatgcatttattgattaaagtaactttttgaatatttctacaaatata 35455433  T
Q  914 ccctcataaaattgtgaaacattaaacacacccacta 950  Q
    | |  | ||||||||||||||||||| |||| |||||    
T  35455432 ctcataaaaaattgtgaaacattaaatacactcacta 35455396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 857 - 939
Target Start/End: Original strand, 40344894 - 40344979
Alignment:
Q  857 catcaataccaatgcattcattgattaatgtaactttttgaata-ttttacaaatataccctcat--aaaattgtgaaacattaaa 939  Q
    |||||| ||||||||| |||||||||| || ||||||||||||| ||||||||||||||||| ||  ||||||||||| |||||||    
T  40344894 catcaaaaccaatgcagtcattgattattgcaactttttgaatatttttacaaatatacccttataaaaaattgtgaaccattaaa 40344979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 944
Target Start/End: Complemental strand, 36659347 - 36659280
Alignment:
Q  880 attaatgtaactttttgaata-ttttacaaatataccctcat--aaaattgtgaaacattaaacacac 944  Q
    ||||||||||||||||||||| |||||||| |||||||| ||  |||||| |||||||||||| ||||    
T  36659347 attaatgtaactttttgaatatttttacaagtataccctaataaaaaattatgaaacattaaatacac 36659280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 818 - 938
Target Start/End: Original strand, 25294782 - 25294904
Alignment:
Q  818 tccctcgggtgcttattataagcaacaaaaccnnnnnnncatcaataccaatgcattcattgattaatgtaactttttgaata-ttttacaaatataccc 916  Q
    |||||| ||| ||||||||||| |||||||||       ||||||||||||| || ||||| ||||||| |||| ||| |||| ||||| ||| |||| |    
T  25294782 tccctccggtccttattataagaaacaaaaccaaaaaa-catcaataccaatacaatcattaattaatgaaactatttaaatatttttataaacatactc 25294880  T
Q  917 tcat--aaaattgtgaaacattaa 938  Q
    ||||  ||||||||||||||||||    
T  25294881 tcataaaaaattgtgaaacattaa 25294904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 7e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 815 - 950
Target Start/End: Complemental strand, 1445581 - 1445443
Alignment:
Q  815 tactccctcgggtgcttattataagcaacaaaaccnnnnnnncatcaataccaatgcattcattgattaatgtaactttttgaata-ttttacaaatata 913  Q
    ||||||||||||  ||||||||||||||||||| |       |||||| | |||||||||||||||||||||||| |||||||||| |||||||||||||    
T  1445581 tactccctcgggaccttattataagcaacaaaaacaaaaaatcatcaaaatcaatgcattcattgattaatgtaattttttgaatacttttacaaatata 1445482  T
Q  914 ccctcat--aaaattgtgaaacattaaacacacccacta 950  Q
    || ||||  ||||||||||||||||||| |||| |||||    
T  1445481 ccttcattaaaaattgtgaaacattaaatacactcacta 1445443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 864 - 939
Target Start/End: Original strand, 2520102 - 2520180
Alignment:
Q  864 accaatgcattcattgattaatgtaactttttgaata-ttttacaaatataccctcat--aaaattgtgaaacattaaa 939  Q
    |||||| |||||||| ||||||||||||||||||||| ||||||||||||| ||||||  |||||||||||||||||||    
T  2520102 accaatacattcattaattaatgtaactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaa 2520180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 880 - 939
Target Start/End: Original strand, 16890253 - 16890315
Alignment:
Q  880 attaatgtaactttttgaata-ttttacaaatataccctcat--aaaattgtgaaacattaaa 939  Q
    ||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  16890253 attaatgtaactttttgaatatttttacaaatataccctcataaaaaattgtgaaacattaaa 16890315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 885 - 947
Target Start/End: Complemental strand, 2207928 - 2207864
Alignment:
Q  885 tgtaactttttgaatatttt-acaaatataccctcat-aaaattgtgaaacattaaacacaccca 947  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||    
T  2207928 tgtaactttttgaatatttttacaaatataccctcataaaaattgtgaagcattaaatacaccca 2207864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 887 - 944
Target Start/End: Original strand, 30653623 - 30653683
Alignment:
Q  887 taactttttgaata-ttttacaaatataccctcataaaa--ttgtgaaacattaaacacac 944  Q
    |||||||||||||| ||||||||||||||||||||||||  ||||||||||||||| ||||    
T  30653623 taactttttgaataattttacaaatataccctcataaaaatttgtgaaacattaaatacac 30653683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 857 - 939
Target Start/End: Complemental strand, 8251422 - 8251337
Alignment:
Q  857 catcaataccaatgcattcattgattaatgtaactttttgaatatttt-acaaatataccctcat--aaaattgtgaaacattaaa 939  Q
    |||||| |||||| || ||||| |||| ||||  |||||||||||||| ||||||||||||||||  ||||||||||| |||||||    
T  8251422 catcaaaaccaatacactcattaattagtgtagttttttgaatatttttacaaatataccctcataaaaaattgtgaagcattaaa 8251337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 872 - 944
Target Start/End: Complemental strand, 20949243 - 20949168
Alignment:
Q  872 attcattgattaatgtaactttttgaata-ttttacaaatataccctcat--aaaattgtgaaacattaaacacac 944  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||  ||||||||||||||||||| ||||    
T  20949243 attcattgattaatgtaactttttaaatatttttacaaatataccctcataaaaaattgtgaaacattaaatacac 20949168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 880 - 950
Target Start/End: Complemental strand, 41508263 - 41508190
Alignment:
Q  880 attaatgtaactttttgaatatttt-acaaatataccctcat--aaaattgtgaaacattaaacacacccacta 950  Q
    |||| ||||||||||||||| |||| ||||||||||||||||  ||||||||||| ||||||| ||||||||||    
T  41508263 attagtgtaactttttgaatgtttttacaaatataccctcataaaaaattgtgaagcattaaatacacccacta 41508190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 864 - 944
Target Start/End: Complemental strand, 12485455 - 12485372
Alignment:
Q  864 accaatgcattcattgattaatgtaactttttgaatatt-ttacaaatataccctcat--aaaattgtgaaacattaaacacac 944  Q
    ||||||||| ||||| |||| |||||||||||| ||| | ||||||||||||||||||  |||||||||||||| |||| ||||    
T  12485455 accaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaatacac 12485372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 864 - 944
Target Start/End: Complemental strand, 12506887 - 12506804
Alignment:
Q  864 accaatgcattcattgattaatgtaactttttgaatatt-ttacaaatataccctcat--aaaattgtgaaacattaaacacac 944  Q
    ||||||||| ||||| |||| |||||||||||| ||| | ||||||||||||||||||  |||||||||||||| |||| ||||    
T  12506887 accaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaaaattgtgaaacaataaatacac 12506804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 857 - 950
Target Start/End: Original strand, 9851771 - 9851871
Alignment:
Q  857 catcaataccaatgcattcattg----attaatgtaactttttgaata-ttttacaaatataccctcataaaat--tgtgaaacattaaacacacccact 949  Q
    |||||||||||||||||||||||    ||||||||||||||||||||| ||||||||||||||| | |||||||  |||||||||||||| | |||||||    
T  9851771 catcaataccaatgcattcattgatatattaatgtaactttttgaatatttttacaaatatacctttataaaatactgtgaaacattaaatatacccact 9851870  T
Q  950 a 950  Q
    |    
T  9851871 a 9851871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 858 - 948
Target Start/End: Complemental strand, 28470113 - 28470025
Alignment:
Q  858 atcaataccaatgcattcattgattaatgtaactttttgaatattttacaaatataccctcat--aaaattgtgaaacattaaacacacccac 948  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||    |||| |||||  ||||||||||||||||||| ||||||||    
T  28470113 atcaaaaccaatgcattcattgattaatgcaactttttgaatattttac----atactctcataaaaaattgtgaaacattaaatacacccac 28470025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 858 - 939
Target Start/End: Complemental strand, 31152618 - 31152536
Alignment:
Q  858 atcaataccaatgcattcattgattaatgtaactttttgaatatttt-acaaatataccctcataaaattgtgaaacattaaa 939  Q
    ||||| ||||||||| | | | ||| ||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  31152618 atcaaaaccaatgcaattaataattcatgtaactttttgaatatttttacaaatatacgctcataaaaatgtgaaacattaaa 31152536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 864 - 936
Target Start/End: Complemental strand, 25130292 - 25130217
Alignment:
Q  864 accaatgcattcattgattaatgtaactttttgaata-ttttacaaatataccctcat--aaaattgtgaaacatt 936  Q
    ||||||||| | ||| |||| ||||| |||||||||| ||||||||||||||| ||||  ||||||||||||||||    
T  25130292 accaatgcagttattaattattgtaaatttttgaatacttttacaaatataccatcatagaaaattgtgaaacatt 25130217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 880 - 939
Target Start/End: Original strand, 28165110 - 28165172
Alignment:
Q  880 attaatgtaactttttgaatatttt-acaaatataccctcat--aaaattgtgaaacattaaa 939  Q
    |||| ||||| |||||||||||||| ||||||||||||| ||  |||||||||||||||||||    
T  28165110 attattgtaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaa 28165172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 857 - 944
Target Start/End: Original strand, 31181014 - 31181103
Alignment:
Q  857 catcaataccaatgcattcattgattaatgtaactttttgaatatttt-acaaatataccctcata--aaattgtgaaacattaaacacac 944  Q
    |||||| ||||||||| ||||| || | | |||||||||||||||||| |||| |||||||| |||  |||||||||||||||||| ||||    
T  31181014 catcaaaaccaatgcaatcattaatca-tataactttttgaatatttttacaagtatacccttatagaaaattgtgaaacattaaatacac 31181103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 857 - 939
Target Start/End: Original strand, 31003547 - 31003631
Alignment:
Q  857 catcaataccaatgcattcattgattaatgtaactttttgaata-ttttacaaatataccctcat--aaaattgtgaaacattaaa 939  Q
    |||||| ||||||||| ||||| || | |||||||||||||||| ||||||||||||||| | ||  |||||||| ||||||||||    
T  31003547 catcaaaaccaatgcaatcattaatca-tgtaactttttgaatatttttacaaatatacctttatagaaaattgttaaacattaaa 31003631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 858 - 939
Target Start/End: Original strand, 12143682 - 12143766
Alignment:
Q  858 atcaataccaatgcattcattgattaatgtaactttttgaata-ttttacaaatataccctcat--aaaattgtgaaacattaaa 939  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||  ||||||||||| |||||||    
T  12143682 atcaaaaccaatgcaatcattaattaatgtaactttttgaatatttttacaaatacaccctcataaaaaattgtgaagcattaaa 12143766  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 857 - 924
Target Start/End: Complemental strand, 180526 - 180458
Alignment:
Q  857 catcaataccaatgcattcattgattaatgtaactttttgaatat-tttacaaatataccctcataaaa 924  Q
    |||||| |||||| || ||||| |||| ||||||||||||||||| |||||||||||||||| ||||||    
T  180526 catcaaaaccaatacactcattaattagtgtaactttttgaatatgtttacaaatatacccttataaaa 180458  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 873 - 938
Target Start/End: Original strand, 2950132 - 2950199
Alignment:
Q  873 ttcattgattaatgtaactttttgaata-ttttacaaatataccctcat-aaaattgtgaaacattaa 938  Q
    |||||| |||||||||| |||||||||| ||||||||||||| ||| || ||||||||||||||||||    
T  2950132 ttcattaattaatgtaattttttgaatatttttacaaatatatcctgataaaaattgtgaaacattaa 2950199  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 874 - 924
Target Start/End: Original strand, 34837129 - 34837180
Alignment:
Q  874 tcattgattaatgtaactttttgaatatttt-acaaatataccctcataaaa 924  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||||||||||    
T  34837129 tcattaattagtgtaactttttgaatatttttacaaatataccctcataaaa 34837180  T

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Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 814 - 950
Target Start/End: Complemental strand, 21795065 - 21794926
Alignment:
Q  814 atactccctcgggtgcttattataagcaacaaaaccnnnnnnncatcaataccaatgcattcattgattaatgtaactttttgaatatttt-acaaatat 912  Q
    |||||||||| ||| ||||||||||| ||||||| |       |||||| ||||||  | ||||||||||| | ||||||||||||||||| ||||||||    
T  21795065 atactccctccggtccttattataagaaacaaaatcaaaaaa-catcaaaaccaatataatcattgattaaagaaactttttgaatatttttacaaatat 21794967  T
Q  913 accctcat---aaaattgtgaaacattaaacacacccacta 950  Q
    ||||||||   ||||||||||||||||||| |||| |||||    
T  21794966 accctcataaaaaaattgtgaaacattaaatacacacacta 21794926  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 857 - 944
Target Start/End: Complemental strand, 38214299 - 38214209
Alignment:
Q  857 catcaataccaatgcattcattgattaatgtaactttttgaata-ttttacaaatataccctcat--aaaattgtgaaacattaaacacac 944  Q
    |||||| |||||| || ||||||||||| | ||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||| ||||    
T  38214299 catcaaaaccaatacaatcattgattaaagaaactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatacac 38214209  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 864 - 950
Target Start/End: Original strand, 39063563 - 39063652
Alignment:
Q  864 accaatgcattcattgattaatgtaactttttgaata-ttttacaaatataccctcat--aaaattgtgaaacattaaacacacccacta 950  Q
    |||||| || ||||||||||| | ||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||| |||| |||||    
T  39063563 accaatacaatcattgattaaagaaactttttgaatatttttacaaatataacctcataaaaaattgtgaaacattaaatacacacacta 39063652  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 857 - 950
Target Start/End: Complemental strand, 38496659 - 38496563
Alignment:
Q  857 catcaataccaatgcattcattgattaatgtaactttttgaata-ttttacaaatataccctcataaaattgt--gaaacattaaacacacccacta 950  Q
    |||||| ||||||||  ||||| |||| |||||||||||||||| ||||||||||||||||| |||||| |||  ||||||||||| ||||| ||||    
T  38496659 catcaaaaccaatgctatcattaattagtgtaactttttgaatatttttacaaatataccctgataaaaatgtgcgaaacattaaatacacctacta 38496563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 857 - 944
Target Start/End: Complemental strand, 40664421 - 40664331
Alignment:
Q  857 catcaataccaatgcattcattgattaatgtaactttttgaatatt-ttacaaatataccctc--ataaaattgtgaaacattaaacacac 944  Q
    |||||| |||||| || ||||| ||||| | ||||||||||||||| ||||||||||||||||  | ||||||||||||||||||| ||||    
T  40664421 catcaaaaccaatacaatcattaattaaagaaactttttgaatattcttacaaatataccctcgtaaaaaattgtgaaacattaaatacac 40664331  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 857 - 950
Target Start/End: Complemental strand, 16781447 - 16781351
Alignment:
Q  857 catcaataccaatgcattcattgattaatgtaactttttgaatattt-tacaaatataccctcat--aaaattgtgaaacattaaacacacccacta 950  Q
    |||||| ||||||| | ||||| |||| | ||| |||||||||| || |||||||||||||||||  ||||| ||||||||||||| ||||| ||||    
T  16781447 catcaaaaccaatgtaatcattaattagtctaattttttgaataattatacaaatataccctcattaaaaatggtgaaacattaaatacacctacta 16781351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 864 - 914
Target Start/End: Complemental strand, 21229662 - 21229611
Alignment:
Q  864 accaatgcattcattgattaatgtaactttttgaata-ttttacaaatatac 914  Q
    ||||||||| ||||| |||| |||||||||||||||| ||||||||||||||    
T  21229662 accaatgcaatcattaattattgtaactttttgaatatttttacaaatatac 21229611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 857 - 950
Target Start/End: Complemental strand, 18838938 - 18838841
Alignment:
Q  857 catcaataccaatgcattcattgattaatgtaactttttgaata--ttttacaaatataccctcataaaa--ttgtgaaacattaaacacacccacta 950  Q
    |||||| ||||||| | ||||| |||||| ||| |||||||||   ||||||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  18838938 catcaaaaccaatgtaatcattaattaatataaatttttgaattatttttacaaatataccctcataaaaaattgtgaaacattaaatacacccacta 18838841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 864 - 924
Target Start/End: Original strand, 31707321 - 31707382
Alignment:
Q  864 accaatgcattcattgattaatgtaactttttgaata-ttttacaaatataccctcataaaa 924  Q
    |||||| || ||||| |||| |||||||||||||||| ||||||||||||||||||||||||    
T  31707321 accaatacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaa 31707382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 864 - 944
Target Start/End: Original strand, 47231542 - 47231624
Alignment:
Q  864 accaatgcattcattgattaatgtaactttttgaata-ttttacaaatataccctcataaaa--ttgtgaaacattaaacacac 944  Q
    ||||||| | ||||| ||||||||||||||||||||| |||||||| |||| ||||||||||  ||||||| ||||||| ||||    
T  47231542 accaatggaatcattaattaatgtaactttttgaatatttttacaattata-cctcataaaaagttgtgaatcattaaatacac 47231624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 874 - 924
Target Start/End: Original strand, 44720561 - 44720612
Alignment:
Q  874 tcattgattaatgtaactttttgaata-ttttacaaatataccctcataaaa 924  Q
    ||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||    
T  44720561 tcattgattaatgtaacattttgaatatttttataaatatatcctcataaaa 44720612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 885 - 939
Target Start/End: Complemental strand, 27032295 - 27032239
Alignment:
Q  885 tgtaactttttgaatattttacaaatataccctcat--aaaattgtgaaacattaaa 939  Q
    ||||||||||| ||||||||||||||||||||| ||  ||| |||||||| ||||||    
T  27032295 tgtaactttttaaatattttacaaatatacccttatagaaagttgtgaaatattaaa 27032239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 864 - 901
Target Start/End: Complemental strand, 34320898 - 34320861
Alignment:
Q  864 accaatgcattcattgattaatgtaactttttgaatat 901  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  34320898 accaatgcattcattaattaatgtaaccttttgaatat 34320861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 864 - 950
Target Start/End: Complemental strand, 51452 - 51363
Alignment:
Q  864 accaatgcattcattgattaatgtaactttttgaata-ttttacaaatataccctcataaaa--ttgtgaaacattaaacacacccacta 950  Q
    |||||| || ||||| ||||||||||| ||||||||| |||||||| |||||||||||||||  ||||||||||||||| ||||| ||||    
T  51452 accaatacaatcattaattaatgtaacattttgaatatttttacaattataccctcataaaaagttgtgaaacattaaatacaccaacta 51363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 857 - 898
Target Start/End: Complemental strand, 5289055 - 5289014
Alignment:
Q  857 catcaataccaatgcattcattgattaatgtaactttttgaa 898  Q
    |||||| ||||||||||| |||||||||||||||||||||||    
T  5289055 catcaaaaccaatgcattaattgattaatgtaactttttgaa 5289014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 864 - 924
Target Start/End: Complemental strand, 6688968 - 6688907
Alignment:
Q  864 accaatgcattcattgattaatgtaactttttgaatatt-ttacaaatataccctcataaaa 924  Q
    ||||||||| ||||| |||| |||||||||||| ||| | ||||||||||||||||||||||    
T  6688968 accaatgcaatcattaattagtgtaactttttgcatactattacaaatataccctcataaaa 6688907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 880 - 950
Target Start/End: Original strand, 11983567 - 11983639
Alignment:
Q  880 attaatgtaactttttgaata-ttttacaaatataccctcataaaa-ttgtgaaacattaaacacacccacta 950  Q
    ||||| ||||||||||||||| |||||||||||||| ||  ||||| ||||||||||||||| ||| ||||||    
T  11983567 attaaggtaactttttgaatacttttacaaatatactcttgtaaaaattgtgaaacattaaatacatccacta 11983639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 880 - 950
Target Start/End: Complemental strand, 2225743 - 2225670
Alignment:
Q  880 attaatgtaactttttgaatatttt-acaaatataccctcataaaa--ttgtgaaacattaaacacacccacta 950  Q
    |||| ||||||||||  |||||||| ||||||||||| ||||||||  ||||||||||||||| ||| ||||||    
T  2225743 attagtgtaacttttgaaatatttttacaaatataccttcataaaaagttgtgaaacattaaatacaaccacta 2225670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 866 - 904
Target Start/End: Original strand, 36477867 - 36477905
Alignment:
Q  866 caatgcattcattgattaatgtaactttttgaatatttt 904  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  36477867 caatgcaatcattaattaatgtaactttttgaatatttt 36477905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 945
Target Start/End: Complemental strand, 18705162 - 18705094
Alignment:
Q  880 attaatgtaactttttgaata-ttttacaaatataccctcataaaa--ttgtgaaacattaaacacacc 945  Q
    |||| |||||||||||||||| ||||||||||||| ||| ||||||  ||||||| ||||||| |||||    
T  18705162 attagtgtaactttttgaatatttttacaaatatatccttataaaaagttgtgaagcattaaatacacc 18705094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 857 - 948
Target Start/End: Complemental strand, 154526 - 154432
Alignment:
Q  857 catcaataccaatgcattcattgattaatgtaactttttgaata-ttttacaaatataccctcat--aaaattgtgaaacattaaacacacccac 948  Q
    |||||| |||||| || ||||| |||| |||||||| ||||||| ||||||||| || |||||||  |||| |||||| ||||||| ||||||||    
T  154526 catcaaaaccaatacactcattaattagtgtaacttgttgaatatttttacaaacatgccctcataaaaaactgtgaagcattaaatacacccac 154432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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