View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5874-Insertion-4 (Length: 792)
Name: NF5874-Insertion-4
Description: NF5874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5874-Insertion-4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 664; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 8 - 792
Target Start/End: Original strand, 53792967 - 53793753
Alignment:
| Q |
8 |
atgcctctcatagtgaaaggatgaaactttgttcttgttcatgctctatagcctctcatcatgagttagaaacgttatctcaccggttacaagctttaaa |
107 |
Q |
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| T |
53792967 |
atgcctctcatagtgaaaggatgaaactttgttcttgttcatgctctatagcctctcatcatgagttagaaacgttatctcaccggttacaagctttaaa |
53793066 |
T |
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| Q |
108 |
gcatgcggcaagctttaaataggattttgtgagatgagtaggaagggatggtcctcgtgaagtaactgttgctagtctgattttgtgcagggtcaggtag |
207 |
Q |
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| T |
53793067 |
gcatgcggcaagctttcaataggattttgtgagatgagtaggaagggatggtcctcgtgaagtaactgttgctagtctgattttgtgcagggtcaggtag |
53793166 |
T |
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| Q |
208 |
catatttgagacattgcggctacgcaaacctttaattgtggttgtaaatgaagatttaatggataatcatcaaagtgaacttgcagaagaacttgccaac |
307 |
Q |
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| T |
53793167 |
catatttgagacattgcggctacgcaaacctttaattgtggttgtaaatgaagatttaatggataatcatcaaagtgaacttgcagaagaacttgccaac |
53793266 |
T |
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| Q |
308 |
acaaaacatttgtattgtgctagtccacaaacactccatcaaactgtagcagatatggatttaaattctcta---ccttatactccaggtgatgcaacac |
404 |
Q |
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| T |
53793267 |
acaaaacatttgtattgtgctagtccacaaacactccatcaaactgtagcagatatggatttaaattctctacttccttatactccaggtgatgcaacac |
53793366 |
T |
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| Q |
405 |
cagtggccaagcatataaacagattccttggttttcctgatgattgatctgaaggctttcacnnnnnnnncctggttaaaagttgtggtgaggggttaat |
504 |
Q |
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| T |
53793367 |
cagtggccaagcatataaacagattccttggttttcctgatgattgatctgaaggctttcacttttttttcctggttaaaagttgtggtgaggggataat |
53793466 |
T |
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| Q |
505 |
aatctctattttggttaacatacgtgcttgatgttcaggtgtagtgaannnnnnnnnncttctataaatcagacatcatgtttaaatatgttatttatag |
604 |
Q |
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| T |
53793467 |
aatctctattttggttaacatacgtgcttgatgttcaggtgtagtg-attttttttttcttctataaatcagacatcatgtttaaatatgttatttatag |
53793565 |
T |
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| Q |
605 |
cttcnnnnnnnnggtccaggctcttgttatagtaagtgtacgcccatacaaggggttaaagtttgaaaacaacaatgcccacccctacattactaaaaac |
704 |
Q |
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| T |
53793566 |
cttc-tttttttggtccaggctcttgttatagtaagtgtgcgcccatacaaggggttaaagtttgaaaacaacaatgcccacccctacattactaaaaac |
53793664 |
T |
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| Q |
705 |
tctcccgaagtgtattttcagat-ggggcaaaaactgtatttttatttgtaagcacacttccggacagcacaaaaactgttatttccta |
792 |
Q |
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| T |
53793665 |
tctcccgaagtgtattttcagatgggggcaaaaactgtatttttatttgtaagcacacttccggacagcacaaaaactgttatttccta |
53793753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 168 - 464
Target Start/End: Original strand, 44202924 - 44203223
Alignment:
| Q |
168 |
agtaactgttgctagtctgattttgtgcagggtcaggtagcatatttgagacattgcggctacgcaaacctttaattgtggttgtaaatgaagatttaat |
267 |
Q |
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| T |
44202924 |
agtaactgtaactagtctgattttatgcagggtcaggtagcatatttgagacgctgcagctatgcaaacctttaattgtggttgtaaatgaggatttgat |
44203023 |
T |
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| Q |
268 |
ggataatcatcaaagtgaacttgcagaagaacttgccaacacaaaacatttgtattgtgctagtccacaaacactccatcaaactgtagcagatatggat |
367 |
Q |
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|||||||||||||||||| ||||| ||||||||||| || | ||||||||||| |||||||||||| ||||||||||||||||| | || ||||||||| |
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| T |
44203024 |
ggataatcatcaaagtgagcttgcggaagaacttgcaaatagaaaacatttgttttgtgctagtcctcaaacactccatcaaaccattgctgatatggat |
44203123 |
T |
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| Q |
368 |
ttaaattctct---accttatactccaggtgatgcaacaccagtggccaagcatataaacagattccttggttttcctgatgattgatctgaaggctttc |
464 |
Q |
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|||||| |||| ||||| ||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||| |
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| T |
44203124 |
ttaaatgctctccgtccttactctccaggtgatgctacgccagtggccaagcatataaacagatttcttggttttcctgatgattgagccgaagactttc |
44203223 |
T |
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