View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5874-Insertion-5 (Length: 735)

Name: NF5874-Insertion-5
Description: NF5874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5874-Insertion-5
NF5874-Insertion-5
[»] chr1 (3 HSPs)
chr1 (8-351)||(42786111-42786446)
chr1 (414-709)||(42785797-42786084)
chr1 (418-479)||(50039847-50039906)
[»] chr5 (2 HSPs)
chr5 (420-696)||(18908407-18908678)
chr5 (430-710)||(32246860-32247132)
[»] chr3 (1 HSPs)
chr3 (420-711)||(3857460-3857748)
[»] chr4 (1 HSPs)
chr4 (414-711)||(32807272-32807569)
[»] chr7 (2 HSPs)
chr7 (428-711)||(9490712-9490979)
chr7 (414-501)||(24904915-24905001)
[»] chr2 (4 HSPs)
chr2 (552-605)||(12606929-12606982)
chr2 (550-611)||(29691175-29691236)
chr2 (414-479)||(2167332-2167397)
chr2 (414-471)||(29691308-29691365)
[»] chr8 (2 HSPs)
chr8 (420-479)||(43776422-43776481)
chr8 (414-479)||(38233391-38233454)
[»] chr6 (1 HSPs)
chr6 (418-475)||(18672240-18672295)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 42786446 - 42786111
Alignment:
Q  8 aaaatggacatgccaaaccattttgctgtactacttaatgtgtcaaaagtttactttatcgacatatatagttagaaagtttagttattagctagcactt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  42786446 aaaatggacatgccaaaccattttgctgtactacttaatgtgtcaaaactttactttatcaacatatatagttagaaagtttaaatattagctagcactt 42786347  T
Q  108 ggctttatgaataggaagttaaggagtaagtattttgnnnnnnnattcgagaagataagnnnnnnncttggtacatttgagaagggaagtttagttagtt 207  Q
    ||||||||||||||||||||||||||||||||||||         ||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  42786346 ggctttatgaataggaagttaaggagtaagtattttttttcttttttcgagaagataagtttttttcttggtacatttgagaagggaagtttagttagtt 42786247  T
Q  208 accacaagtccacaattgtataattcacatattatcaataacaatgttaccttgaaagtctcatgctctctacccttcatatgcgtatgatttagaacca 307  Q
    |        ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42786246 a--------ccacaattgtataattcacatattatcaataacaatgttgccttgaaagtctcatgctctctacccttcatatgcgtatgatttaaaacca 42786155  T
Q  308 tgaaatcctaattaataaatgataccatacctatcaaagtaaaa 351  Q
    |||||||||||||||||||||||||| | |  ||||||||||||    
T  42786154 tgaaatcctaattaataaatgataccgtgctaatcaaagtaaaa 42786111  T

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Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 414 - 709
Target Start/End: Complemental strand, 42786084 - 42785797
Alignment:
Q  414 agaagttaaaatgaattatattaacacaatcaaatgaccttcctagcattaggtgtgctaaggaaggatacatcaaagttcaaacaatacagtatgtaca 513  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||    ||||||||||||   ||||||||    
T  42786084 agaagctaaaataaattatattaacacaatcaaatggccttcctagcactaggtgtgctaaggaagaa-acat----gttcaaacaata---tatgtaca 42785993  T
Q  514 ataattacaagtcaccaaaagataaacataaagaataactattaactgatgcctaatatcacaaacgggctaagctaccaaccatgatagttggagggaa 613  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| |    
T  42785992 ataattacaagtcaccaaaagataaacagaaagaataactattaaccgatgcctaatatcataaatgggctaagctaccaaccatgatagttggaggg-a 42785894  T
Q  614 agagtaacatattttcctttc-accaagtaaaagtcgacgacttcattttgtcctccacttgcaatatagtggagtttttgttcctgaaaatcctgt 709  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  42785893 agagtaacatattttcctttcaaccaagtaaaagtcgacgacttcattttgtccgccacttgcaatatagaggagtttttgttcttgaaaatcctgt 42785797  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 50039906 - 50039847
Alignment:
Q  418 gttaaaatgaattatattaacacaatcaaatgaccttcctagcattaggtgtgctaaggaag 479  Q
    ||||||||||| |||||||||||||   |||  ||||||||||| |||||||||||||||||    
T  50039906 gttaaaatgaaatatattaacacaac--aatcgccttcctagcactaggtgtgctaaggaag 50039847  T

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Target: chr5 (Bit Score: 148; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 420 - 696
Target Start/End: Original strand, 18908407 - 18908678
Alignment:
Q  420 taaaatgaattatattaacacaatcaaatgaccttcctagcattaggtgtgctaaggaaggatacatcaaagttcaaacaatacagtatgtacaataatt 519  Q
    |||||| |||||||||||| ||||||||||  |||||||||||||||||||||||||||| | ||| ||||||||||||||||   ||||||||||||||    
T  18908407 taaaataaattatattaacgcaatcaaatggtcttcctagcattaggtgtgctaaggaagaa-acaccaaagttcaaacaata---tatgtacaataatt 18908502  T
Q  520 acaagtcaccaaaagataaacataaagaataactattaactgatgcctaatatcacaaacgggctaagctaccaaccatgatagttggagggaaagagta 619  Q
    |||||||||||||||||||| | |||||||||||||||||  ||| ||||| || |||| || |||||| |||||||||| ||||||||||| |||||||    
T  18908503 acaagtcaccaaaagataaatagaaagaataactattaaccaatgtctaat-tcgcaaatggactaagccaccaaccatggtagttggaggg-aagagta 18908600  T
Q  620 acatattttcctttc-accaagtaaaagtcgacgacttcattttgtcctccacttgcaatatagtggagtttttgttc 696  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||| |||||||| |||||||||||||    
T  18908601 acatattttcctttcaaccacgtaaaagtcgacgactttattttgtccgccacttacaatatagaggagtttttgttc 18908678  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 430 - 710
Target Start/End: Complemental strand, 32247132 - 32246860
Alignment:
Q  430 tatattaacacaatcaaatgaccttcctagcattaggtgtgctaaggaaggatacatcaaagttcaaacaatacagtatgtacaataattacaagtcacc 529  Q
    ||||||||| ||| |||||||||||| ||||| ||||||||| ||||||| | ||| ||||||   ||||||   |||| |||||||||||||   ||||    
T  32247132 tatattaacccaaccaaatgaccttcttagcactaggtgtgcgaaggaagaa-acaccaaagtcacaacaat---gtatatacaataattacataccacc 32247037  T
Q  530 aaaagataaacataaagaataactattaactgatgcctaatatcacaaacgggctaagctaccaaccatgatagttggagggaaagagtaacatattttc 629  Q
    |||| | ||    ||||||  |||||||||  |||||||| |||||||| |||||| || |||||||| |||||||||||||  ||||| || ||||| |    
T  32247036 aaaatacaag---aaagaaagactattaaccaatgcctaaaatcacaaatgggctatgccaccaaccaagatagttggaggg-gagagttacgtatttcc 32246941  T
Q  630 ctttc-accaagtaaaagtcgacgacttcattttgtcctccacttgcaatatagtggagtttttgttcctgaaaatcctgtt 710  Q
    | ||| ||||  | |||||  ||||||| ||||||||  |||||||| |||||| | | ||||||||| |||||| ||||||    
T  32246940 ccttcaaccacttgaaagttaacgactttattttgtctaccacttgc-atatagagcaatttttgttcttgaaaaccctgtt 32246860  T

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Target: chr3 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 420 - 711
Target Start/End: Original strand, 3857460 - 3857748
Alignment:
Q  420 taaaatgaattatattaacacaatcaaatgaccttcctagcattaggtgtgctaaggaaggatacatcaaagttcaaacaatacagtatgtacaataatt 519  Q
    |||||||||| |||||||||||| ||| || ||||| ||||| ||||||||||||||||| | ||||||||||||||||||||   | | ||||||||||    
T  3857460 taaaatgaataatattaacacaaccaactggccttcgtagcactaggtgtgctaaggaagaa-acatcaaagttcaaacaata---tttatacaataatt 3857555  T
Q  520 acaagtcaccaaaaga-taaacataaagaataactattaactgatgcctaatatcacaaacgggctaagctaccaaccatgatagttggagggaaagagt 618  Q
    ||||  |||||||  | ||| ||||||||||||||||||||  |  ||||||||| |||||||||||||| |||||||||| ||||| ||||| |||| |    
T  3857556 acaaaccaccaaagcaataaccataaagaataactattaaccaagacctaatatcgcaaacgggctaagccaccaaccatggtagttagaggg-aagact 3857654  T
Q  619 aacatattttcctttc-accaagtaaaagtcgacgacttcattttgtcctccacttgcaatatagtggagtttttgttcctgaaaatcctgtta 711  Q
    ||||||||| |||||| ||||  |||| ||||||||||| ||| ||||| ||||||||||||||| ||||||||||||| |||||| |||||||    
T  3857655 aacatatttccctttcaaccacataaatgtcgacgactttattctgtccgccacttgcaatatagaggagtttttgttcttgaaaaccctgtta 3857748  T

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Target: chr4 (Bit Score: 108; Significance: 7e-54; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 414 - 711
Target Start/End: Original strand, 32807272 - 32807569
Alignment:
Q  414 agaagttaaaatgaattatattaacacaatcaaatgaccttcctagcattaggtgtgctaaggaaggatacatcaaagttcaaacaatacagtatgtaca 513  Q
    ||||| ||||||||||||||||||||| | ||| ||  |||| ||||||||||||||||||||||| | |||||||||| ||||||| |   | | ||||    
T  32807272 agaagctaaaatgaattatattaacacgaccaattggtcttcttagcattaggtgtgctaaggaagaa-acatcaaagtacaaacaaaa---tctataca 32807367  T
Q  514 ataattacaagtcaccaaaagataaacataaagaataactattaactgatgcctaatatcacaaacgggctaa----gctaccaaccatgatagttggag 609  Q
    |||||||||||||||||||| |||||||  |||||||| |||||||  |||||||||||| |||||| |||||    || |||||||||  ||||| |||    
T  32807368 ataattacaagtcaccaaaaaataaacaggaagaataattattaaccaatgcctaatatctcaaacgagctaattatgccaccaaccatcgtagttagag 32807467  T
Q  610 ggaaagagtaacatattttcctttc-accaagtaaaagtcgacgacttcattttgtcctccacttgcaatatagtggagtttttgttcctgaaaatcctg 708  Q
    || |||| |||||||||| |||||| ||||  |||| ||||||||||| ||||||||| |||||||||||||||  || ||||||||| |||||||||||    
T  32807468 gg-aagactaacatatttccctttcaaccacataaatgtcgacgactttattttgtccgccacttgcaatatagatgaatttttgttcttgaaaatcctg 32807566  T

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Target: chr7 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 428 - 711
Target Start/End: Original strand, 9490712 - 9490979
Alignment:
Q  428 attatattaacacaatcaaatgaccttcctagcattaggtgtgctaaggaaggatacatcaaagttcaaacaatacagtatgtacaataattacaagtca 527  Q
    |||||||||| ||||||||  | |||||||| |||||||||||||||||||| | ||||||||||||||||||||   | | ||||||||||||||  ||    
T  9490712 attatattaatacaatcaacgggccttcctaacattaggtgtgctaaggaagaa-acatcaaagttcaaacaata---tctatacaataattacaaacca 9490807  T
Q  528 ccaaaagataaacataaagaataactattaactgatgcctaatatcacaaacgggctaagctaccaaccatgatagttggagggaaagagtaacatattt 627  Q
    |||||  |            ||||||||||||  |||||||||||  |||||||||||||| | |||| ||| ||||||||||||| || ||||||||||    
T  9490808 ccaaagca------------ataactattaaccaatgcctaatattgcaaacgggctaagccatcaacaatggtagttggagggaa-gactaacatattt 9490894  T
Q  628 tcctttca-ccaagtaaaagtcgacgacttcattttgtcctccacttgcaatatagtggagtttttgttcctgaaaatcctgtta 711  Q
     ||||||| |||  |||| ||| ||||||| ||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  9490895 ccctttcaaccacataaatgtcaacgactttattttgtcccccacttgcaatatagaggagtttttgttcttgaaaatcctgtta 9490979  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 414 - 501
Target Start/End: Original strand, 24904915 - 24905001
Alignment:
Q  414 agaagttaaaatgaattatattaacacaatcaaatgaccttcctagcattaggtgtgctaaggaaggatacatcaaagttcaaacaat 501  Q
    ||||| ||||||||| ||||||||| ||| |||||| |||||||||||  ||||||||||||||| || ||| |||||| ||||||||    
T  24904915 agaagataaaatgaaatatattaactcaaccaaatggccttcctagcacaaggtgtgctaaggaa-gaaacaccaaagtacaaacaat 24905001  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 605
Target Start/End: Complemental strand, 12606982 - 12606929
Alignment:
Q  552 ctattaactgatgcctaatatcacaaacgggctaagctaccaaccatgatagtt 605  Q
    ||||||||  ||||||| |||| |||||||||||||| ||||||||||||||||    
T  12606982 ctattaaccaatgcctagtatcgcaaacgggctaagccaccaaccatgatagtt 12606929  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 611
Target Start/End: Complemental strand, 29691236 - 29691175
Alignment:
Q  550 aactattaactgatgcctaatatcacaaacgggctaagctaccaaccatgatagttggaggg 611  Q
    ||||||||||  |||||||  ||| ||||| |||||||| ||||||||||||||||||||||    
T  29691236 aactattaaccaatgcctagaatcgcaaacaggctaagccaccaaccatgatagttggaggg 29691175  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 479
Target Start/End: Original strand, 2167332 - 2167397
Alignment:
Q  414 agaagttaaaatgaattatattaacacaatcaaatgaccttcctagcattaggtgtgctaaggaag 479  Q
    ||||||||||||||||||||||| |||    ||| || ||||||||||| |||||||| |||||||    
T  2167332 agaagttaaaatgaattatattaccacctcaaaaagaacttcctagcataaggtgtgcgaaggaag 2167397  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 471
Target Start/End: Complemental strand, 29691365 - 29691308
Alignment:
Q  414 agaagttaaaatgaattatattaacacaatcaaatgaccttcctagcattaggtgtgc 471  Q
    ||||| ||||||||| ||||||||| ||| |||||| |||||||||||  ||||||||    
T  29691365 agaagctaaaatgaaatatattaactcaaccaaatggccttcctagcacaaggtgtgc 29691308  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 479
Target Start/End: Complemental strand, 43776481 - 43776422
Alignment:
Q  420 taaaatgaattatattaacacaatcaaatgaccttcctagcattaggtgtgctaaggaag 479  Q
    ||||||||||||||||| |||||  ||||| |||||||||||  |||||| |||||||||    
T  43776481 taaaatgaattatattaccacaacaaaatggccttcctagcacaaggtgtactaaggaag 43776422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 414 - 479
Target Start/End: Complemental strand, 38233454 - 38233391
Alignment:
Q  414 agaagttaaaatgaattatattaacacaatcaaatgaccttcctagcattaggtgtgctaaggaag 479  Q
    ||||| ||||||||| |||||||||||||   | || ||||||||||| |||||||||||||||||    
T  38233454 agaagctaaaatgaaatatattaacacaac--attggccttcctagcactaggtgtgctaaggaag 38233391  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 18672295 - 18672240
Alignment:
Q  418 gttaaaatgaattatattaacacaatcaaatgaccttcctagcattaggtgtgctaag 475  Q
    ||||||||||| |||||||||||||   ||||  ||||||||||||||||||||||||    
T  18672295 gttaaaatgaaatatattaacacaac--aatggtcttcctagcattaggtgtgctaag 18672240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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