View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5874-Insertion-6 (Length: 576)

Name: NF5874-Insertion-6
Description: NF5874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5874-Insertion-6
NF5874-Insertion-6
[»] chr4 (9 HSPs)
chr4 (9-368)||(16066389-16066756)
chr4 (403-576)||(16066824-16066997)
chr4 (137-243)||(16189706-16189813)
chr4 (186-238)||(32915610-32915662)
chr4 (136-193)||(4383426-4383484)
chr4 (173-223)||(8402733-8402783)
chr4 (134-171)||(22234818-22234855)
chr4 (175-211)||(20950420-20950456)
chr4 (186-214)||(25742913-25742941)
[»] chr6 (19 HSPs)
chr6 (135-235)||(7377984-7378098)
chr6 (183-243)||(34073348-34073409)
chr6 (183-246)||(7265594-7265658)
chr6 (138-223)||(9025448-9025535)
chr6 (183-223)||(9617452-9617492)
chr6 (183-223)||(9629401-9629441)
chr6 (187-242)||(30866149-30866205)
chr6 (173-246)||(9658873-9658947)
chr6 (173-246)||(19040346-19040420)
chr6 (135-169)||(21424744-21424778)
chr6 (173-211)||(30851630-30851668)
chr6 (178-246)||(20371106-20371175)
chr6 (177-214)||(33419200-33419237)
chr6 (183-223)||(7996379-7996419)
chr6 (183-223)||(8022382-8022422)
chr6 (188-235)||(24832593-24832641)
chr6 (173-221)||(26314625-26314673)
chr6 (183-234)||(26562695-26562747)
chr6 (173-213)||(33001280-33001320)
[»] chr1 (14 HSPs)
chr1 (137-246)||(29163323-29163446)
chr1 (183-246)||(6427344-6427408)
chr1 (127-213)||(13436486-13436570)
chr1 (183-235)||(34371719-34371771)
chr1 (183-226)||(30749855-30749898)
chr1 (183-226)||(30771306-30771349)
chr1 (134-213)||(22881566-22881647)
chr1 (183-221)||(52903269-52903307)
chr1 (183-235)||(38503325-38503378)
chr1 (173-213)||(5898257-5898297)
chr1 (183-269)||(7918212-7918300)
chr1 (136-172)||(12919027-12919063)
chr1 (183-246)||(36878455-36878519)
chr1 (183-223)||(44482248-44482288)
[»] chr5 (13 HSPs)
chr5 (173-231)||(42029762-42029820)
chr5 (184-223)||(23012410-23012449)
chr5 (177-223)||(17925167-17925213)
chr5 (175-213)||(18145296-18145334)
chr5 (176-226)||(32426863-32426913)
chr5 (134-213)||(6247650-6247730)
chr5 (183-223)||(15086489-15086529)
chr5 (183-223)||(16203796-16203836)
chr5 (173-240)||(30502379-30502447)
chr5 (173-240)||(30542722-30542790)
chr5 (183-223)||(32630736-32630776)
chr5 (186-226)||(39758287-39758327)
chr5 (173-241)||(42126311-42126378)
[»] chr8 (9 HSPs)
chr8 (182-223)||(12606829-12606870)
chr8 (173-223)||(14134717-14134767)
chr8 (184-226)||(18964192-18964234)
chr8 (173-212)||(8293854-8293893)
chr8 (134-264)||(27213522-27213645)
chr8 (136-223)||(31236532-31236618)
chr8 (182-220)||(28384994-28385032)
chr8 (183-224)||(26902176-26902217)
chr8 (183-223)||(4786339-4786379)
[»] chr3 (8 HSPs)
chr3 (183-246)||(8039836-8039900)
chr3 (148-226)||(13414484-13414559)
chr3 (183-226)||(35222953-35222996)
chr3 (183-246)||(8383251-8383315)
chr3 (177-223)||(48202264-48202310)
chr3 (184-212)||(24633403-24633431)
chr3 (183-223)||(40150572-40150612)
chr3 (173-213)||(40993326-40993366)
[»] chr7 (11 HSPs)
chr7 (185-223)||(3520345-3520383)
chr7 (188-223)||(8239056-8239091)
chr7 (136-239)||(9482935-9483040)
chr7 (183-226)||(24146831-24146874)
chr7 (184-229)||(3142080-3142125)
chr7 (173-213)||(640141-640181)
chr7 (173-213)||(5835275-5835315)
chr7 (174-226)||(18213025-18213077)
chr7 (183-246)||(19206044-19206108)
chr7 (183-223)||(22602711-22602751)
chr7 (177-213)||(48438574-48438610)
[»] chr2 (8 HSPs)
chr2 (173-213)||(34993973-34994013)
chr2 (183-226)||(20242728-20242771)
chr2 (183-221)||(34691806-34691844)
chr2 (183-221)||(34714218-34714256)
chr2 (183-235)||(44860325-44860378)
chr2 (173-213)||(5367220-5367260)
chr2 (183-223)||(35056886-35056926)
chr2 (135-175)||(42511322-42511362)
[»] scaffold0110 (1 HSPs)
scaffold0110 (184-223)||(28868-28907)
[»] scaffold0376 (1 HSPs)
scaffold0376 (183-213)||(6340-6370)
[»] scaffold0123 (1 HSPs)
scaffold0123 (186-235)||(44529-44579)
[»] scaffold0011 (1 HSPs)
scaffold0011 (182-223)||(240021-240062)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 368
Target Start/End: Original strand, 16066389 - 16066756
Alignment:
Q  9 gcagggccatcttaatccaatacgatctcatccccaaacaaccatggg--acttgccatcccgtccaaatcgaaaaaacactc-tatgtgggccccaaat 105  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  16066389 gcagggccatcttaatccaatatgatctcatccccaaacaaccatggggtacttgccatcccgtccaaatggaaaaaacactcgtatgtgggccccaaat 16066488  T
Q  106 ggagcagtgcgcagggagttcctactttcctatgaagcacgaacacttctcagattagccgtgtccctgtcgtgtttgacaccgacacatataattacat 205  Q
    ||||||||||||| |||||||||||||| |||| ||||||| | |||||| ||||||||| ||||  |||| ||| ||||| ||||||||||||||||||    
T  16066489 ggagcagtgcgcaaggagttcctacttttctattaagcacggagacttcttagattagccatgtctatgtcatgtctgacatcgacacatataattacat 16066588  T
Q  206 tga-------attataagattttctaaa-tttttagcgatgttggcgtggcttatctgtgtcgtgtctggtggtgttcgtgcttcatagctactttcaga 297  Q
    |||       |||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||   ||||||||||| ||||||||||||||||||    
T  16066589 tgaattatatattatatgattttctaaattttttagcaatgttggcgtggcttatctgtgttgtgtc---tggtgttcgtgtttcatagctactttcaga 16066685  T
Q  298 tgcaaattgacatttctattaagaatatttttcaatttgatgtatttaggaactatagtaataccgtttta 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16066686 tgcaaattgacatttctattaagaatatttttcaatttgatgtatttaggaactatagtaataccgtttta 16066756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 403 - 576
Target Start/End: Original strand, 16066824 - 16066997
Alignment:
Q  403 taactgacctgcaaaagaacttgaagggtaagaagttgatgatctttctgattaacaagaaggttatagatacgtttctctctaaacctatgaagcacca 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  16066824 taactgacctgcaaaagaacttgaagggtaagaagttgatgatctttctgattaacaagaagattgtagatacgtttctctctaaacctatgaagcacca 16066923  T
Q  503 taacaccaagaagtgcagcaccaaatgtcatcaataatatcaacacataaggccttcctctttgactccctccc 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16066924 taacaccaagaagtgcagcaccaaatgtcatcaataatatcaacacataaggccttcctctttgactccctccc 16066997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 137 - 243
Target Start/End: Complemental strand, 16189813 - 16189706
Alignment:
Q  137 atgaagcacgaacacttctcagattagccgtgtccctgtcgtgtttgacaccgacacatataattacattgaattataagattttct-aaatttttagcg 235  Q
    |||||||| | |||||||||||||||||| |||||| |  ||||  | |||||||||| ||||||||| ||||||||  |||||||| ||||||||||||    
T  16189813 atgaagcatggacacttctcagattagccatgtcccggctgtgtccgtcaccgacacacataattacactgaattatgtgattttctcaaatttttagcg 16189714  T
Q  236 atgttggc 243  Q
     |||||||    
T  16189713 gtgttggc 16189706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 32915610 - 32915662
Alignment:
Q  186 accgacacatataattacattgaattataagattttctaaatttttagcgatg 238  Q
    ||||| ||||||||||||||||||||||  |||||| |||||| |||||||||    
T  32915610 accgaaacatataattacattgaattatgtgattttttaaattattagcgatg 32915662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 4383484 - 4383426
Alignment:
Q  136 tatgaagcacgaacacttctcagattagccgtgtccc-tgtcgtgtttgacaccgacac 193  Q
    ||||||||||| ||||| ||| |||||| |||||||  |||||||||||||||||||||    
T  4383484 tatgaagcacggacactcctcggattaggcgtgtccggtgtcgtgtttgacaccgacac 4383426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 8402733 - 8402783
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattataagattttct 223  Q
    |||||||| |||||| || ||||||||||||| ||||||||| ||||||||    
T  8402733 tgtcgtgtctgacactgagacatataattacactgaattatatgattttct 8402783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 22234818 - 22234855
Alignment:
Q  134 cctatgaagcacgaacacttctcagattagccgtgtcc 171  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  22234818 cctatgaagcacgaacacttctcggattagctgtgtcc 22234855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 20950420 - 20950456
Alignment:
Q  175 tcgtgtttgacaccgacacatataattacattgaatt 211  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  20950420 tcgtgtctgacaccgacacatataattacactgaatt 20950456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 25742913 - 25742941
Alignment:
Q  186 accgacacatataattacattgaattata 214  Q
    |||||||||||||||||||||||||||||    
T  25742913 accgacacatataattacattgaattata 25742941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 135 - 235
Target Start/End: Complemental strand, 7378098 - 7377984
Alignment:
Q  135 ctatgaagcacgaacacttctcagattagccgtgtccc-------------tgtcgtgtttgacaccgacacatataattacattgaattataagatttt 221  Q
    |||||||||||| |||||||||||||||||||||||||             ||||||||  |||||||||||||||||||||||||||||||  ||||||    
T  7378098 ctatgaagcacggacacttctcagattagccgtgtcccggtgtcggatgcatgtcgtgtccgacaccgacacatataattacattgaattatgtgatttt 7377999  T
Q  222 ct-aaatttttagcg 235  Q
    || ||||||||||||    
T  7377998 ctcaaatttttagcg 7377984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 34073348 - 34073409
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggc 243  Q
    ||||||||| |||||||||||| |||||||| ||||||||| ||||| ||||||||||||||    
T  34073348 gacaccgacccatataattacactgaattatgagattttctcaaattattagcgatgttggc 34073409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 7265594 - 7265658
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 246  Q
    |||||||||||||||||||||| ||||||||  |||||||| ||||| |||||| ||||||||||    
T  7265594 gacaccgacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtg 7265658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 9025448 - 9025535
Alignment:
Q  138 tgaagcacgaacacttctcagattagccgtgtccc--tgtcgtgtttgacaccgacacatataattacattgaattataagattttct 223  Q
    ||||||||| ||||||||| |||||| ||||||||  |||||     |||||||||||||||||||||| ||||||||  ||||||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgacaccgacacatataattacactgaattatgtgattttct 9025535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 9617492 - 9617452
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct 223  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  9617492 gacaccgacacatataattacattgaattatgtgattttct 9617452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 9629441 - 9629401
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct 223  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  9629441 gacaccgacacatataattacattgaattatgtgattttct 9629401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 30866149 - 30866205
Alignment:
Q  187 ccgacacatataattacattgaattataagattttct-aaatttttagcgatgttgg 242  Q
    |||||||||||||||||||||||||||  |||||||| ||||| |||||| ||||||    
T  30866149 ccgacacatataattacattgaattatgtgattttctcaaattattagcggtgttgg 30866205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 9658947 - 9658873
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattataagattttc-taaatttttagcgatgttggcgtg 246  Q
    |||||||| | ||||||||| ||||||||||| ||||||||  ||||||| |||||| |||||| ||| ||||||    
T  9658947 tgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttcttaaattattagcggtgtcggcgtg 9658873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 19040420 - 19040346
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 246  Q
    ||||||||  ||||| |||||||||||||||| ||||||||  |||||||| ||||| |||||| ||| ||||||    
T  19040420 tgtcgtgtccgacacagacacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtg 19040346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 21424744 - 21424778
Alignment:
Q  135 ctatgaagcacgaacacttctcagattagccgtgt 169  Q
    |||||||||||| ||||||||||||||||||||||    
T  21424744 ctatgaagcacggacacttctcagattagccgtgt 21424778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 30851668 - 30851630
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaatt 211  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  30851668 tgtcgtgtccgacaccgacacatataattacattgaatt 30851630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 20371106 - 20371175
Alignment:
Q  178 tgtttgacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 246  Q
    |||| |||||||||||||||||| ||||||| ||||  |||||||| ||||| |||||| ||| ||||||    
T  20371106 tgttcgacaccgacacatataatcacattgagttatgtgattttctcaaattattagcggtgtcggcgtg 20371175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 33419237 - 33419200
Alignment:
Q  177 gtgtttgacaccgacacatataattacattgaattata 214  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  33419237 gtgtctgacaccaacacatataattacattgaattata 33419200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 7996379 - 7996419
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct 223  Q
    ||||||||| |||||||||||| ||||||||| ||||||||    
T  7996379 gacaccgacgcatataattacactgaattatatgattttct 7996419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 8022422 - 8022382
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct 223  Q
    ||||||||| |||||||||||| ||||||||| ||||||||    
T  8022422 gacaccgacgcatataattacactgaattatatgattttct 8022382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 24832641 - 24832593
Alignment:
Q  188 cgacacatataattacattgaattataagattttct-aaatttttagcg 235  Q
    ||||||||||||||||| | |||||||||||||||| ||||| ||||||    
T  24832641 cgacacatataattacactaaattataagattttctcaaattattagcg 24832593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 26314625 - 26314673
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattataagatttt 221  Q
    |||||| | |||| |||||| ||||||||||||||||||||| ||||||    
T  26314625 tgtcgtatctgaccccgacatatataattacattgaattatatgatttt 26314673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 26562747 - 26562695
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct-aaatttttagc 234  Q
    |||| ||||||||||||||||| ||||||||  |||||||| |||||||||||    
T  26562747 gacatcgacacatataattacactgaattatgtgattttctcaaatttttagc 26562695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 33001280 - 33001320
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattat 213  Q
    ||||||||  |||||||||||||||||||||||| ||||||    
T  33001280 tgtcgtgtccgacaccgacacatataattacatttaattat 33001320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 246
Target Start/End: Original strand, 29163323 - 29163446
Alignment:
Q  137 atgaagcacgaacacttctcagattagccgtgtccc-------------tgtcgtgtttgacaccgacacatataattacattgaattataagatttt-c 222  Q
    |||||||||||||||||||| |||||||||||||||             ||||||||  |||||||||||||||||||| ||||||||||  |||||| |    
T  29163323 atgaagcacgaacacttctctgattagccgtgtcccggtgtcaggcacgtgtcgtgtccgacaccgacacatataattaaattgaattatgtgattttcc 29163422  T
Q  223 taaatttttagcgatgttggcgtg 246  Q
    ||||||||||||| ||| ||||||    
T  29163423 taaatttttagcggtgtcggcgtg 29163446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 6427408 - 6427344
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 246  Q
    |||||| ||||||||||||||||||||||||  |||||||| ||||| |||||| ||||||||||    
T  6427408 gacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtg 6427344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 13436570 - 13436486
Alignment:
Q  127 ctactttcctatgaagcacgaacacttctcagattagccgtgtccctgtcgtgtttgacaccgacacatataattacattgaattat 213  Q
    |||||||||||||||||||| ||||||||| |||||| ||||| |    |||||  |||||| ||||||||||||||| ||||||||    
T  13436570 ctactttcctatgaagcacggacacttctcggattagtcgtgttc--tacgtgtccgacaccaacacatataattacactgaattat 13436486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 34371771 - 34371719
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttctaaatttttagcg 235  Q
    |||||||||||||||||||||| ||||||||  |||||||| |||| ||||||    
T  34371771 gacaccgacacatataattacactgaattatgtgattttctcaattattagcg 34371719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 30749898 - 30749855
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttctaaa 226  Q
    |||||||||||||||||||||| ||||||||  |||||||||||    
T  30749898 gacaccgacacatataattacactgaattatgtgattttctaaa 30749855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 30771349 - 30771306
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttctaaa 226  Q
    |||||||||||||||||||||| ||||||||  |||||||||||    
T  30771349 gacaccgacacatataattacactgaattatgtgattttctaaa 30771306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 22881566 - 22881647
Alignment:
Q  134 cctatgaagcacgaacacttctcagattagccgtgtccc--tgtcgtgtttgacaccgacacatataattacattgaattat 213  Q
    ||||||||||||| ||||| ||| |||||| ||||||||  ||||||||  ||||||||||| | |||||||| | ||||||    
T  22881566 cctatgaagcacggacactcctcggattagacgtgtcccggtgtcgtgtccgacaccgacacttgtaattacactaaattat 22881647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 52903307 - 52903269
Alignment:
Q  183 gacaccgacacatataattacattgaattataagatttt 221  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  52903307 gacaccgacacatataattacactgaattatatgatttt 52903269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 38503378 - 38503325
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct-aaatttttagcg 235  Q
    |||||||||||||||||||||| |||| |||| |||||||| ||||| ||||||    
T  38503378 gacaccgacacatataattacactgaaatatatgattttctcaaattattagcg 38503325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 5898257 - 5898297
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattat 213  Q
    |||||||| |||||||||| |||||||||||| ||||||||    
T  5898257 tgtcgtgtctgacaccgacgcatataattacactgaattat 5898297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 7918212 - 7918300
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtggc-ttatctgtgtcgtgtctggtg 269  Q
    ||||| |||||||||||||||| ||||||||  |||||||| ||||| |||| |||||  ||||| | || ||||||||||||| ||||    
T  7918212 gacactgacacatataattacactgaattatgtgattttctcaaattattagtgatgtcagcgtgtcattgtctgtgtcgtgtccggtg 7918300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 12919063 - 12919027
Alignment:
Q  136 tatgaagcacgaacacttctcagattagccgtgtccc 172  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  12919063 tatgaagcacgaacacttctcggataagccgtgtccc 12919027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 36878519 - 36878455
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 246  Q
    ||||||||||| |||||||||| ||||||||  |||||||| ||||| |||||| ||| ||||||    
T  36878519 gacaccgacacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtg 36878455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 44482288 - 44482248
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct 223  Q
    |||||||||||||||||||||| ||||||||  ||||||||    
T  44482288 gacaccgacacatataattacactgaattatgtgattttct 44482248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 42029820 - 42029762
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattataagattttctaaattttt 231  Q
    ||||||||  |||||||| ||||||||||||||||||||||  ||||||||||||||||    
T  42029820 tgtcgtgtccgacaccgatacatataattacattgaattatgtgattttctaaattttt 42029762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 23012410 - 23012449
Alignment:
Q  184 acaccgacacatataattacattgaattataagattttct 223  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  23012410 acaccgacacatataattacattaaattatatgattttct 23012449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 17925167 - 17925213
Alignment:
Q  177 gtgtttgacaccgacacatataattacattgaattataagattttct 223  Q
    ||||| ||||||||||||||| |||||||||||||||  ||||||||    
T  17925167 gtgttcgacaccgacacatattattacattgaattatgtgattttct 17925213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 18145296 - 18145334
Alignment:
Q  175 tcgtgtttgacaccgacacatataattacattgaattat 213  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  18145296 tcgtgtttgacaccaacacatatgattacattgaattat 18145334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 32426863 - 32426913
Alignment:
Q  176 cgtgtttgacaccgacacatataattacattgaattataagattttctaaa 226  Q
    |||||| |||||||||||| ||||||||| ||||||||  |||||||||||    
T  32426863 cgtgttagacaccgacacaaataattacaatgaattatgtgattttctaaa 32426913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 6247730 - 6247650
Alignment:
Q  134 cctatgaagcacgaacacttctcagattagccgtgtccc-tgtcgtgtttgacaccgacacatataattacattgaattat 213  Q
    ||||||||||||  ||||||||| ||||||  ||||||| || |||||  ||||||||||| | |||||||| ||||||||    
T  6247730 cctatgaagcacagacacttctcggattaggtgtgtcccgtgccgtgtccgacaccgacacttgtaattacactgaattat 6247650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 15086529 - 15086489
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct 223  Q
    ||||||||||||||||||||||||  |||||| ||||||||    
T  15086529 gacaccgacacatataattacattacattatatgattttct 15086489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 16203796 - 16203836
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct 223  Q
    |||||||||||||||||||||| | |||||| |||||||||    
T  16203796 gacaccgacacatataattacactaaattatgagattttct 16203836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 30502379 - 30502447
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgtt 240  Q
    ||||||||  |||||||||||||||||||||| |||||||   |||||||| ||||| |||||| ||||    
T  30502379 tgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattattagcggtgtt 30502447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 30542722 - 30542790
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgtt 240  Q
    ||||||||  |||||||||||||||||||||| |||||||   |||||||| ||||| |||||| ||||    
T  30542722 tgtcgtgtccgacaccgacacatataattacactgaattaagtgattttctcaaattattagcggtgtt 30542790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 32630736 - 32630776
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct 223  Q
    ||||| ||||||||||||||||||||||||||  |||||||    
T  32630736 gacactgacacatataattacattgaattatataattttct 32630776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 39758327 - 39758287
Alignment:
Q  186 accgacacatataattacattgaattataagattttctaaa 226  Q
    ||||||||||||||||||| ||||||||  |||||||||||    
T  39758327 accgacacatataattacactgaattatgtgattttctaaa 39758287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 42126311 - 42126378
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattataagattttctaaatttttagcgatgttg 241  Q
    |||||||||||||||  ||| ||||||||||| ||||||||||  ||||  ||||| ||||||||||||    
T  42126311 tgtcgtgtttgacactaacatatataattacactgaattataa-tttttgcaaattattagcgatgttg 42126378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 12606829 - 12606870
Alignment:
Q  182 tgacaccgacacatataattacattgaattataagattttct 223  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  12606829 tgacaccgacacatataattacattgaattatatgattttct 12606870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 14134767 - 14134717
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattataagattttct 223  Q
    |||||||||||||||||||| ||||||||||| ||||||||  ||||||||    
T  14134767 tgtcgtgtttgacaccgacatatataattacactgaattatgtgattttct 14134717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 18964234 - 18964192
Alignment:
Q  184 acaccgacacatataattacattgaattataagattttctaaa 226  Q
    ||||||||||||||||||||||||||||||  |||||||||||    
T  18964234 acaccgacacatataattacattgaattatgtgattttctaaa 18964192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 8293893 - 8293854
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaatta 212  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  8293893 tgtcatgtttgacaccgacacatataattacactgaatta 8293854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 264
Target Start/End: Complemental strand, 27213645 - 27213522
Alignment:
Q  134 cctatgaagcacgaacacttctcagattagccgtgtccctgtcgtgtttgacaccgacacatataattacattgaattataagattttct-aaattttta 232  Q
    ||||||||||||| ||||||||| ||||||||||||||| || ||        |||||||||||||||||| ||||||||  |||||||| ||||| |||    
T  27213645 cctatgaagcacggacacttctcggattagccgtgtcccggt-gt--------ccgacacatataattacagtgaattatgtgattttctgaaattatta 27213555  T
Q  233 gcgatgttggcgtggct-tatctgtgtcgtgtc 264  Q
    ||  ||| |||||| || |||| ||||||||||    
T  27213554 gcagtgtcggcgtgtctgtatccgtgtcgtgtc 27213522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 31236532 - 31236618
Alignment:
Q  136 tatgaagcacgaacacttctcagattagccgtgtccctgtcgtgtttgacaccgacacatataattacattgaattataagattttct 223  Q
    ||||| ||||| ||||||||  | ||||| |||||||  ||||||  | |||||||||||||||||||||||||||||  ||||||||    
T  31236532 tatgaggcacggacacttctagggttagctgtgtccca-tcgtgtccgtcaccgacacatataattacattgaattatgtgattttct 31236618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 28384994 - 28385032
Alignment:
Q  182 tgacaccgacacatataattacattgaattataagattt 220  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  28384994 tgacaccgacacatataattacactgaattatgagattt 28385032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 26902176 - 26902217
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttcta 224  Q
    |||||||||||||||||||||| ||||||||  |||||||||    
T  26902176 gacaccgacacatataattacactgaattatgtgattttcta 26902217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 4786339 - 4786379
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct 223  Q
    |||||||||||||||||||||| ||||||||  ||||||||    
T  4786339 gacaccgacacatataattacactgaattatgtgattttct 4786379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 8039836 - 8039900
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 246  Q
    |||||||||||||||||||||| |||||||||  ||||||| ||||| |||||| ||||||||||    
T  8039836 gacaccgacacatataattacactgaattatataattttctcaaattattagcggtgttggcgtg 8039900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 226
Target Start/End: Complemental strand, 13414559 - 13414484
Alignment:
Q  148 acacttctcagattagccgtgtccctgtcgtgtttgacaccgacacatataattacattgaattataagattttctaaa 226  Q
    ||||||||| ||| || |||||||||||   ||  |||||||||||||||||||||||||||||||  |||||||||||    
T  13414559 acacttctcggataaggcgtgtccctgt---gtccgacaccgacacatataattacattgaattatttgattttctaaa 13414484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 35222996 - 35222953
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttctaaa 226  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  35222996 gacaccgacacatataattacattgaattatgtgattttctaaa 35222953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 8383315 - 8383251
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 246  Q
    ||||||||||| |||||||||| ||||||||| |||||||| ||||| |||||| ||| ||||||    
T  8383315 gacaccgacacttataattacactgaattatatgattttctcaaattattagcggtgtcggcgtg 8383251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 48202264 - 48202310
Alignment:
Q  177 gtgtttgacaccgacacatataattacattgaattataagattttct 223  Q
    ||||||||||| |||||||||||||||||| ||||||  ||||||||    
T  48202264 gtgtttgacacagacacatataattacattaaattatgtgattttct 48202310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 212
Target Start/End: Original strand, 24633403 - 24633431
Alignment:
Q  184 acaccgacacatataattacattgaatta 212  Q
    |||||||||||||||||||||||||||||    
T  24633403 acaccgacacatataattacattgaatta 24633431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 40150572 - 40150612
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct 223  Q
    ||||||||||||||| ||||||||||||||||  |||||||    
T  40150572 gacaccgacacatatgattacattgaattatatcattttct 40150612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 40993326 - 40993366
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattat 213  Q
    ||||||||  |||||||||||||||||||||| ||||||||    
T  40993326 tgtcgtgtccgacaccgacacatataattacactgaattat 40993366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 3520345 - 3520383
Alignment:
Q  185 caccgacacatataattacattgaattataagattttct 223  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  3520345 caccgacacatataattacattgaattatatgattttct 3520383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 8239056 - 8239091
Alignment:
Q  188 cgacacatataattacattgaattataagattttct 223  Q
    ||||||||||||||||| ||||||||||||||||||    
T  8239056 cgacacatataattacactgaattataagattttct 8239091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 239
Target Start/End: Complemental strand, 9483040 - 9482935
Alignment:
Q  136 tatgaagcacgaacacttctcagattagccgtgtccc--tgtcgtgtttgacaccgacacatataattacattgaattataagattttct-aaattttta 232  Q
    ||||||||||| |||||||||  |||||| |||||||  ||||| ||  |||||||||||||||||||||| |||||| |  |||||||| ||||| | |    
T  9483040 tatgaagcacggacacttctcgtattagc-gtgtcccggtgtcgcgtccgacaccgacacatataattacactgaattgtgtgattttctcaaattatca 9482942  T
Q  233 gcgatgt 239  Q
    |||||||    
T  9482941 gcgatgt 9482935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 24146874 - 24146831
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttctaaa 226  Q
    |||||||||||||||||||| ||||||||||  |||||||||||    
T  24146874 gacaccgacacatataattatattgaattatgtgattttctaaa 24146831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 3142080 - 3142125
Alignment:
Q  184 acaccgacacatataattacattgaattataagattttctaaattt 229  Q
    |||||||||||||| |||||||||||||||| ||||| || |||||    
T  3142080 acaccgacacatatgattacattgaattatatgatttactcaattt 3142125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 640181 - 640141
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattat 213  Q
    |||||| | ||||||||||||||||||||||| ||||||||    
T  640181 tgtcgtatctgacaccgacacatataattacactgaattat 640141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 5835315 - 5835275
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattat 213  Q
    |||| ||| ||||||||||||||||||||||| ||||||||    
T  5835315 tgtcatgtctgacaccgacacatataattacactgaattat 5835275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 18213025 - 18213077
Alignment:
Q  174 gtcgtgtttgacaccgacacatataattacattgaattataagattttctaaa 226  Q
    |||||||  |||||||||||||||||||||| | ||||||  |||||||||||    
T  18213025 gtcgtgtccgacaccgacacatataattacactaaattatgtgattttctaaa 18213077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 19206108 - 19206044
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 246  Q
    |||||||||||||||||||| | ||||||||  |||||||| ||||| |||||| ||| ||||||    
T  19206108 gacaccgacacatataattataatgaattatgtgattttctcaaattattagcggtgtcggcgtg 19206044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 22602711 - 22602751
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct 223  Q
    |||||||||||||||||||||| ||||||||  ||||||||    
T  22602711 gacaccgacacatataattacactgaattatgtgattttct 22602751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 48438610 - 48438574
Alignment:
Q  177 gtgtttgacaccgacacatataattacattgaattat 213  Q
    ||||||||||||||||| | |||||||||||||||||    
T  48438610 gtgtttgacaccgacacgtgtaattacattgaattat 48438574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 34993973 - 34994013
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattat 213  Q
    ||||||||| ||||| |||||||||||||||||||||||||    
T  34993973 tgtcgtgttcgacactgacacatataattacattgaattat 34994013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 20242728 - 20242771
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttctaaa 226  Q
    |||||||||||||||||||||| ||||||||  |||||||||||    
T  20242728 gacaccgacacatataattacactgaattatgtgattttctaaa 20242771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 34691806 - 34691844
Alignment:
Q  183 gacaccgacacatataattacattgaattataagatttt 221  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  34691806 gacaccgacacatataattacactgaattatatgatttt 34691844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 34714218 - 34714256
Alignment:
Q  183 gacaccgacacatataattacattgaattataagatttt 221  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  34714218 gacaccgacacatataattacactgaattatatgatttt 34714256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Complemental strand, 44860378 - 44860325
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct-aaatttttagcg 235  Q
    |||||||||||||||||||||| ||||||||  |||||||| ||||| ||||||    
T  44860378 gacaccgacacatataattacactgaattatgcgattttctcaaattattagcg 44860325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 5367260 - 5367220
Alignment:
Q  173 tgtcgtgtttgacaccgacacatataattacattgaattat 213  Q
    ||||||||  |||||||||||||||||||||| ||||||||    
T  5367260 tgtcgtgtccgacaccgacacatataattacactgaattat 5367220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 35056926 - 35056886
Alignment:
Q  183 gacaccgacacatataattacattgaattataagattttct 223  Q
    |||||||||||||||||||||| ||||||||| | ||||||    
T  35056926 gacaccgacacatataattacactgaattatatggttttct 35056886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 42511322 - 42511362
Alignment:
Q  135 ctatgaagcacgaacacttctcagattagccgtgtccctgt 175  Q
    |||||||||||| ||||| ||| ||||||||||||||||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtccctgt 42511362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 28907 - 28868
Alignment:
Q  184 acaccgacacatataattacattgaattataagattttct 223  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  28907 acaccgacacatataattacattgaattatgcgattttct 28868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 213
Target Start/End: Complemental strand, 6370 - 6340
Alignment:
Q  183 gacaccgacacatataattacattgaattat 213  Q
    |||||||||||||||||||||||||||||||    
T  6370 gacaccgacacatataattacattgaattat 6340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 44529 - 44579
Alignment:
Q  186 accgacacatataattacattgaattataagattttct-aaatttttagcg 235  Q
    ||||||||||||||||||| ||||||||  |||||||| ||||||||||||    
T  44529 accgacacatataattacactgaattatgtgattttctcaaatttttagcg 44579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 240021 - 240062
Alignment:
Q  182 tgacaccgacacatataattacattgaattataagattttct 223  Q
    |||||||||||||||| ||||||||||||||||  |||||||    
T  240021 tgacaccgacacatatgattacattgaattatattattttct 240062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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