View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5874_high_2 (Length: 401)

Name: NF5874_high_2
Description: NF5874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5874_high_2
NF5874_high_2
[»] chr4 (4 HSPs)
chr4 (217-396)||(16066824-16067003)
chr4 (2-182)||(16066571-16066756)
chr4 (1-52)||(32915611-32915662)
chr4 (1-57)||(16189706-16189763)
[»] chr6 (7 HSPs)
chr6 (1-49)||(7377984-7378033)
chr6 (1-57)||(34073352-34073409)
chr6 (1-60)||(7265598-7265658)
chr6 (1-56)||(30866149-30866205)
chr6 (1-37)||(9617452-9617488)
chr6 (1-37)||(9629401-9629437)
chr6 (2-49)||(24832593-24832641)
[»] chr1 (3 HSPs)
chr1 (4-60)||(6427344-6427401)
chr1 (1-60)||(29163386-29163446)
chr1 (1-49)||(34371719-34371767)
[»] chr8 (3 HSPs)
chr8 (1-37)||(12606834-12606870)
chr8 (1-40)||(18964192-18964231)
chr8 (1-37)||(31236582-31236618)
[»] chr7 (2 HSPs)
chr7 (1-37)||(3520347-3520383)
chr7 (2-37)||(8239056-8239091)
[»] chr5 (2 HSPs)
chr5 (1-45)||(42029762-42029806)
chr5 (1-37)||(23012413-23012449)
[»] chr3 (3 HSPs)
chr3 (1-60)||(8039840-8039900)
chr3 (1-40)||(13414484-13414523)
chr3 (1-40)||(35222953-35222992)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-49)||(44530-44579)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-37)||(28868-28904)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 217 - 396
Target Start/End: Original strand, 16066824 - 16067003
Alignment:
Q  217 taactgacctgcaaaagaacttgaagggtaagaagttgatgatctttctgattaacaagaaggttatagatacgtttctctctaaacctatgaagcacca 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  16066824 taactgacctgcaaaagaacttgaagggtaagaagttgatgatctttctgattaacaagaagattgtagatacgtttctctctaaacctatgaagcacca 16066923  T
Q  317 taacaccaagaagtgcagcaccaaatgtcatcaataatatcaacacataaggccttcctctttgactccctccccctttg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16066924 taacaccaagaagtgcagcaccaaatgtcatcaataatatcaacacataaggccttcctctttgactccctccccctttg 16067003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 2 - 182
Target Start/End: Original strand, 16066571 - 16066756
Alignment:
Q  2 cgacacatataattacattgaattataa-------gattttctaaattttt-agcgatgttggcgtggcttatctgtgtcgtgtctggtggtgttcgtgc 93  Q
    |||||||||||||||||||||||||||        |||||||||||||||| ||| ||||||||||||||||||||||| |||||||||   |||||||     
T  16066571 cgacacatataattacattgaattatatattatatgattttctaaattttttagcaatgttggcgtggcttatctgtgttgtgtctggt---gttcgtgt 16066667  T
Q  94 ttcatagctactttcagatgcaaattgacatttctattaagaatatttttcaatttgatgtatttaggaactatagtaataccgtttta 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16066668 ttcatagctactttcagatgcaaattgacatttctattaagaatatttttcaatttgatgtatttaggaactatagtaataccgtttta 16066756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 32915611 - 32915662
Alignment:
Q  1 ccgacacatataattacattgaattataagattttctaaatttttagcgatg 52  Q
    |||| ||||||||||||||||||||||  |||||| |||||| |||||||||    
T  32915611 ccgaaacatataattacattgaattatgtgattttttaaattattagcgatg 32915662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 16189763 - 16189706
Alignment:
Q  1 ccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggc 57  Q
    |||||||| ||||||||| ||||||||  |||||||| |||||||||||| |||||||    
T  16189763 ccgacacacataattacactgaattatgtgattttctcaaatttttagcggtgttggc 16189706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7378033 - 7377984
Alignment:
Q  1 ccgacacatataattacattgaattataagattttct-aaatttttagcg 49  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  7378033 ccgacacatataattacattgaattatgtgattttctcaaatttttagcg 7377984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 34073352 - 34073409
Alignment:
Q  1 ccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggc 57  Q
    ||||| |||||||||||| |||||||| ||||||||| ||||| ||||||||||||||    
T  34073352 ccgacccatataattacactgaattatgagattttctcaaattattagcgatgttggc 34073409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7265598 - 7265658
Alignment:
Q  1 ccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 60  Q
    |||||||||||||||||| ||||||||  |||||||| ||||| |||||| ||||||||||    
T  7265598 ccgacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtg 7265658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 30866149 - 30866205
Alignment:
Q  1 ccgacacatataattacattgaattataagattttct-aaatttttagcgatgttgg 56  Q
    |||||||||||||||||||||||||||  |||||||| ||||| |||||| ||||||    
T  30866149 ccgacacatataattacattgaattatgtgattttctcaaattattagcggtgttgg 30866205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9617488 - 9617452
Alignment:
Q  1 ccgacacatataattacattgaattataagattttct 37  Q
    |||||||||||||||||||||||||||  ||||||||    
T  9617488 ccgacacatataattacattgaattatgtgattttct 9617452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9629437 - 9629401
Alignment:
Q  1 ccgacacatataattacattgaattataagattttct 37  Q
    |||||||||||||||||||||||||||  ||||||||    
T  9629437 ccgacacatataattacattgaattatgtgattttct 9629401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 24832641 - 24832593
Alignment:
Q  2 cgacacatataattacattgaattataagattttct-aaatttttagcg 49  Q
    ||||||||||||||||| | |||||||||||||||| ||||| ||||||    
T  24832641 cgacacatataattacactaaattataagattttctcaaattattagcg 24832593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 6427401 - 6427344
Alignment:
Q  4 acacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 60  Q
    ||||||||||||||||||||||||  |||||||| ||||| |||||| ||||||||||    
T  6427401 acacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtg 6427344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29163386 - 29163446
Alignment:
Q  1 ccgacacatataattacattgaattataagatttt-ctaaatttttagcgatgttggcgtg 60  Q
    |||||||||||||||| ||||||||||  |||||| |||||||||||||| ||| ||||||    
T  29163386 ccgacacatataattaaattgaattatgtgattttcctaaatttttagcggtgtcggcgtg 29163446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34371767 - 34371719
Alignment:
Q  1 ccgacacatataattacattgaattataagattttctaaatttttagcg 49  Q
    |||||||||||||||||| ||||||||  |||||||| |||| ||||||    
T  34371767 ccgacacatataattacactgaattatgtgattttctcaattattagcg 34371719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12606834 - 12606870
Alignment:
Q  1 ccgacacatataattacattgaattataagattttct 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  12606834 ccgacacatataattacattgaattatatgattttct 12606870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18964231 - 18964192
Alignment:
Q  1 ccgacacatataattacattgaattataagattttctaaa 40  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  18964231 ccgacacatataattacattgaattatgtgattttctaaa 18964192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31236582 - 31236618
Alignment:
Q  1 ccgacacatataattacattgaattataagattttct 37  Q
    |||||||||||||||||||||||||||  ||||||||    
T  31236582 ccgacacatataattacattgaattatgtgattttct 31236618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3520347 - 3520383
Alignment:
Q  1 ccgacacatataattacattgaattataagattttct 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  3520347 ccgacacatataattacattgaattatatgattttct 3520383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 37
Target Start/End: Original strand, 8239056 - 8239091
Alignment:
Q  2 cgacacatataattacattgaattataagattttct 37  Q
    ||||||||||||||||| ||||||||||||||||||    
T  8239056 cgacacatataattacactgaattataagattttct 8239091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42029806 - 42029762
Alignment:
Q  1 ccgacacatataattacattgaattataagattttctaaattttt 45  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||    
T  42029806 ccgatacatataattacattgaattatgtgattttctaaattttt 42029762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23012413 - 23012449
Alignment:
Q  1 ccgacacatataattacattgaattataagattttct 37  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  23012413 ccgacacatataattacattaaattatatgattttct 23012449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8039840 - 8039900
Alignment:
Q  1 ccgacacatataattacattgaattataagattttct-aaatttttagcgatgttggcgtg 60  Q
    |||||||||||||||||| |||||||||  ||||||| ||||| |||||| ||||||||||    
T  8039840 ccgacacatataattacactgaattatataattttctcaaattattagcggtgttggcgtg 8039900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13414523 - 13414484
Alignment:
Q  1 ccgacacatataattacattgaattataagattttctaaa 40  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  13414523 ccgacacatataattacattgaattatttgattttctaaa 13414484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35222992 - 35222953
Alignment:
Q  1 ccgacacatataattacattgaattataagattttctaaa 40  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  35222992 ccgacacatataattacattgaattatgtgattttctaaa 35222953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44530 - 44579
Alignment:
Q  1 ccgacacatataattacattgaattataagattttct-aaatttttagcg 49  Q
    |||||||||||||||||| ||||||||  |||||||| ||||||||||||    
T  44530 ccgacacatataattacactgaattatgtgattttctcaaatttttagcg 44579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28904 - 28868
Alignment:
Q  1 ccgacacatataattacattgaattataagattttct 37  Q
    |||||||||||||||||||||||||||  ||||||||    
T  28904 ccgacacatataattacattgaattatgcgattttct 28868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University