View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5874_low_1 (Length: 594)
Name: NF5874_low_1
Description: NF5874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5874_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 20 - 485
Target Start/End: Original strand, 32325007 - 32325473
Alignment:
| Q |
20 |
acgtggtggggacagattacactagaaggaaaatgaatatactattcatcatcactttgtagcagccttatggagatattgtttgtttagtgtagtggca |
119 |
Q |
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| T |
32325007 |
acgtggtggggacagattacactagaaggaaaatgaatatactattcatcatcactttgtagcagccttatggagatattgtttgtttagtgtagtggca |
32325106 |
T |
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| Q |
120 |
actaagtaatgcaaactagctagtaactaactagtgcagtgccaagggtataaaagggtggtgcgtgtagcaatattgtgatatatgcattattgggaag |
219 |
Q |
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| T |
32325107 |
actaagtaatgcaaactagctagtaactaactagtgcagtgccaagggtataaaagggtggtgcgtgtagcaatattgtgatatatgcattattgggaag |
32325206 |
T |
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| Q |
220 |
tgcttaataattaggcaagagatggggattatgagagtagtatttgcgatggttctggttgttgtggtgatcgttctaagtccttgtttggttaatggga |
319 |
Q |
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| T |
32325207 |
tgcttaataattaggcaagagatggggattatgagagtagtatttgcgatggttctggttgttgtggtgatcgttgtaagtccttgtttggttaatggga |
32325306 |
T |
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| Q |
320 |
gaaactattttcatgagaagacaatggatgttgaaggcatcaactctaccgatatcgatgaagttttacgtggagataatagttctgtggaagactcaag |
419 |
Q |
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| T |
32325307 |
gaaactattttcatgagaagacaatggatgttgatggcatcaactctaccgataccgatgaagttttacgtggagataatagttctgtggaagactcaag |
32325406 |
T |
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| Q |
420 |
tggaagcaagatagggtactcatctgaaaatgtattagtt-gaaaggaagctcagtaagaacaatgg |
485 |
Q |
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| T |
32325407 |
tggaagcaagatagggtactcatctgaaaatgtattagttggaaaggaagctcagtaagaacaatgg |
32325473 |
T |
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