View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5874_low_3 (Length: 304)
Name: NF5874_low_3
Description: NF5874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5874_low_3 |
 | |
|
| [»] scaffold0017 (2 HSPs) |
| | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 8342349 - 8342626
Alignment:
| Q |
18 |
cagttaacatcatcgacgatattccactgggtgcttaaccacagctctaatcttcaagagcttcaacttaatgataacttgttaaaaggtaccattcatc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8342349 |
cagttaacatcatcgacgatattccactgggtgcttaactacaactctaatcttcaagagcttcaacttcatgataacttgttaaaaggtaccattcatc |
8342448 |
T |
|
| Q |
118 |
atgattttggcaacaaaatgcattcacttgtgaatttctatctctctggtaacaatctagaaggcaatatcccaaaatccattgggaatatatgcacctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8342449 |
atgattttggcaacaaaatgcattcacttgtgaatttctatctctctggtaacaatctagaaggcaatatcccaaaatccattgggaatatatgcacctt |
8342548 |
T |
|
| Q |
218 |
ggagagatttgaagcttttgataacaacttgagcggagaaatttcaggttctatcatccataataactactctcattg |
295 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8342549 |
ggagagatttgaagcttttgataaccacttgagcggagaaatttcaggttctatcatccataataactactctcattg |
8342626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 26728034 - 26728248
Alignment:
| Q |
35 |
gatattccactgggtgcttaaccacagctctaatcttcaagagcttcaacttaatgataacttgttaaaaggtaccattcatcatgattttggcaacaaa |
134 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||||||||| || | ||| | ||||||| ||| |||||| |||| | ||||||||||||||| | |
|
|
| T |
26728034 |
gatattccacttggtgcttaactacacctctaatcttcaagacctctacctttctaataactttgtaagaggtactattcctgatgattttggcaacata |
26728133 |
T |
|
| Q |
135 |
atgcattcacttgtgaatttctatctctctggtaacaatctagaaggcaatatcccaaaatccattgggaatatatgcaccttggagagatttgaagctt |
234 |
Q |
| |
|
|||||||||||||||||| || | ||||| | |||| |||||||||||| ||||||||||||||||||| ||||||||||||| | | ||||| ||||| |
|
|
| T |
26728134 |
atgcattcacttgtgaatctcgaactctcagacaacagtctagaaggcaagatcccaaaatccattgggagtatatgcaccttgcaaaaatttgcagctt |
26728233 |
T |
|
| Q |
235 |
ttgataacaacttga |
249 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26728234 |
ttgataacaacttga |
26728248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 83 - 286
Target Start/End: Complemental strand, 11544672 - 11544469
Alignment:
| Q |
83 |
acttaatgataacttgttaaaaggtaccattcatcatgattttggcaacaaaatgcattcacttgtgaatttctatctctctggtaacaatctagaaggc |
182 |
Q |
| |
|
|||| ||| ||||||||||| ||||||||||| | |||||||||||||| |||||| ||||||||| || |||||||||| | |||| |||||||||| |
|
|
| T |
11544672 |
actttatggtaacttgttaagaggtaccattcctgatgattttggcaacgtaatgcaatcacttgtgcatctctatctctcagagaacagtctagaaggc |
11544573 |
T |
|
| Q |
183 |
aatatcccaaaatccattgggaatatatgcaccttggagagatttgaagcttttgataacaacttgagcggagaaatttcaggttctatcatccataata |
282 |
Q |
| |
|
|| ||||||||||||||||| || |||||||||||| || |||||||||| ||||||| |||||| |||| ||||||| || |||||||||||||| |
|
|
| T |
11544572 |
aagatcccaaaatccattggaaacatatgcaccttgcagtcatttgaagctcgtgataaccgcttgagtggagggatttcagattttatcatccataata |
11544473 |
T |
|
| Q |
283 |
acta |
286 |
Q |
| |
|
|||| |
|
|
| T |
11544472 |
acta |
11544469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 44612478 - 44612682
Alignment:
| Q |
25 |
catcatcgacgatattccactgggtgcttaaccacagctctaatcttcaagagcttcaacttaatgataacttgttaaaaggtaccattcatcatgattt |
124 |
Q |
| |
|
||||||| | ||||||| | ||| |||||||| ||| ||| ||||||||| | ||| | ||| | |||||||||| | ||||||||||| | ||||||| |
|
|
| T |
44612478 |
catcatcaatgatattcgattggatgcttaactacaactccaatcttcaacaccttgacctttctaataacttgttgagaggtaccattcctaatgattt |
44612577 |
T |
|
| Q |
125 |
tggcaacaaaatgcattcacttgtgaatttctatctctctggtaacaatctagaaggcaatatcccaaaatccattgggaatatatgcaccttggagaga |
224 |
Q |
| |
|
||| |||| ||||||||| ||||| | | || ||||| | | ||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||||| | |
|
|
| T |
44612578 |
tggaaacataatgcattcgcttgtaagtctcaatctcacaagcaactatctagaaggcaagatcccaaaatcaattgggaatatttgcaccttggagaca |
44612677 |
T |
|
| Q |
225 |
tttga |
229 |
Q |
| |
|
||||| |
|
|
| T |
44612678 |
tttga |
44612682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 44145281 - 44145484
Alignment:
| Q |
25 |
catcatcgacgatattccactgggtgcttaaccacagctctaatcttcaagagcttcaacttaatgataacttgttaaaaggtaccattcatcatgattt |
124 |
Q |
| |
|
||||||| | ||||||| | |||||||||||| ||| ||| ||||||||| | ||| | ||| ||| ||||||||||| || |||||||| | ||||||| |
|
|
| T |
44145281 |
catcatcaatgatattcaattgggtgcttaactacaactccaatcttcaacaccttgagctttatggtaacttgttaagagataccattcctgatgattt |
44145380 |
T |
|
| Q |
125 |
tggcaacaaaatgcattcacttgtgaatttctatctctctggtaacaatctagaaggcaatatcccaaaatccattgggaatatatgcaccttggagaga |
224 |
Q |
| |
|
||| |||| ||||||||| ||||| | | | ||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||||||| ||| | |
|
|
| T |
44145381 |
tggaaacataatgcattcgcttgtaagtcttgatctctcatacaacaatctagaaggaaagatcccaaaatcaattgggaatatttgcaccttgcagaca |
44145480 |
T |
|
| Q |
225 |
tttg |
228 |
Q |
| |
|
|||| |
|
|
| T |
44145481 |
tttg |
44145484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 284
Target Start/End: Original strand, 16817999 - 16818259
Alignment:
| Q |
24 |
acatcatcgacgatattccactgggtgcttaaccacagctctaatcttcaagagcttcaacttaatgataacttgttaaaaggtaccattcatcatgatt |
123 |
Q |
| |
|
|||||||| | |||| |||| || |||||||| ||| || ||||||||| ||||| | ||| | |||||||||||| ||||||||||| |||||| |
|
|
| T |
16817999 |
acatcatcaatgataatccatcggatgcttaactacaacttcaatcttcaaaagcttgacctttctaataacttgttaagaggtaccattctagatgatt |
16818098 |
T |
|
| Q |
124 |
ttggcaacaaaatgcattcacttgtgaatttctatctctctggtaacaatctagaaggcaatatcccaaaatccattgggaatatatgcaccttggagag |
223 |
Q |
| |
|
|||| ||| ||||||||||||||| ||| || ||||||| || | ||| ||||| || ||||||||||| ||||||||||||||||||||| | |
|
|
| T |
16818099 |
ttggttacataatgcattcacttgttaatgtcgatctctcctacaatagtcttgaaggaaagatcccaaaatcgattgggaatatatgcaccttgcaagc |
16818198 |
T |
|
| Q |
224 |
atttgaagcttttgataacaacttgagcggagaaatttcaggttctatcatccataataac |
284 |
Q |
| |
|
|||| ||| |||| || ||||||| || || ||||||| || |||||||||||||||| |
|
|
| T |
16818199 |
atttagggctaatgattaccacttgagtggggagatttcagattttatcatccataataac |
16818259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 227
Target Start/End: Original strand, 174202 - 174394
Alignment:
| Q |
35 |
gatattccactgggtgcttaaccacagctctaatcttcaagagcttcaacttaatgataacttgttaaaaggtaccattcatcatgattttggcaacaaa |
134 |
Q |
| |
|
||||||| | |||||| ||||| ||||||| ||||||||| | ||| | ||| |||||||||||| | |||| |||||| |||||||||| |||| | |
|
|
| T |
174202 |
gatattcaattgggtgtttaactacagctccaatcttcaacaacttgacctttctgataacttgttgagaggtcccattccggatgattttggaaacata |
174301 |
T |
|
| Q |
135 |
atgcattcacttgtgaatttctatctctctggtaacaatctagaaggcaatatcccaaaatccattgggaatatatgcaccttggagagattt |
227 |
Q |
| |
|
|||||||||||||| | | | ||||||| | |||| | ||||||| || ||||||||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
174302 |
atgcattcacttgtaagtcttgatctctcatggaacagtttagaaggaaagatcccaaaatcagttgggaatatttgcaccttggagacattt |
174394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 169296 - 169408
Alignment:
| Q |
36 |
atattccactgggtgcttaaccacagctctaatcttcaagagcttcaacttaatgataacttgttaaaaggtaccattcatcatgattttggcaacaaaa |
135 |
Q |
| |
|
|||||| | |||||||||||| ||||||||||||||||| | ||| | ||| | ||||||||| | |||| | |||| | |||||||||| |||| || |
|
|
| T |
169296 |
atattcaattgggtgcttaactacagctctaatcttcaacacctttacctttctcgtaacttgttgagaggtcctattcctgatgattttggaaacataa |
169395 |
T |
|
| Q |
136 |
tgcattcacttgt |
148 |
Q |
| |
|
||||||||||||| |
|
|
| T |
169396 |
tgcattcacttgt |
169408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 29228242 - 29228084
Alignment:
| Q |
26 |
atcatcgacgatattccactgggtgcttaaccacagctctaatcttcaagagcttcaacttaatgataacttgttaaaaggtaccattcatcatgatttt |
125 |
Q |
| |
|
|||||||| ||||||| ||| |||| ||||| ||||||| || |||||| | ||| | || ||||||| || | || ||||||||||| | ||||||| |
|
|
| T |
29228242 |
atcatcgatgatattcaacttggtgtttaactacagctcaaaccttcaacaccttgacctctatgataatttatcaagaggtaccattcctggtgatttt |
29228143 |
T |
|
| Q |
126 |
ggcaacaaaatgcattcacttgtgaatttctatctctctggtaacaatctagaaggcaa |
184 |
Q |
| |
|
|| |||| ||||||||||||||| | | || |||| || |||||| |||||||||||| |
|
|
| T |
29228142 |
gggaacataatgcattcacttgtaagtctcaatctgtcaagtaacagtctagaaggcaa |
29228084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 29341541 - 29341383
Alignment:
| Q |
26 |
atcatcgacgatattccactgggtgcttaaccacagctctaatcttcaagagcttcaacttaatgataacttgttaaaaggtaccattcatcatgatttt |
125 |
Q |
| |
|
|||||||| ||||||| ||| |||| ||||| ||||||| || |||||| | ||| | || ||||||| || | || ||||||||||| | ||||||| |
|
|
| T |
29341541 |
atcatcgatgatattcaacttggtgtttaactacagctcaaaccttcaacaccttgacctctatgataatttatcaagaggtaccattcctggtgatttt |
29341442 |
T |
|
| Q |
126 |
ggcaacaaaatgcattcacttgtgaatttctatctctctggtaacaatctagaaggcaa |
184 |
Q |
| |
|
|| |||| ||||||||||||||| | | || |||| || |||||| |||||||||||| |
|
|
| T |
29341441 |
gggaacataatgcattcacttgtaagtctcaatctgtcaagtaacagtctagaaggcaa |
29341383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 12249394 - 12249350
Alignment:
| Q |
156 |
tatctctctggtaacaatctagaaggcaatatcccaaaatccatt |
200 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
12249394 |
tatctatctggtaacaagctacaaggcaatattccaaaatccatt |
12249350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 29496 - 29384
Alignment:
| Q |
36 |
atattccactgggtgcttaaccacagctctaatcttcaagagcttcaacttaatgataacttgttaaaaggtaccattcatcatgattttggcaacaaaa |
135 |
Q |
| |
|
|||||| | |||||||||||| ||||||||||||||||| | ||| | ||| | ||||||||| | |||| | |||| | |||||||||| |||| || |
|
|
| T |
29496 |
atattcaattgggtgcttaactacagctctaatcttcaacacctttacctttctcgtaacttgttgagaggtcctattcctgatgattttggaaacataa |
29397 |
T |
|
| Q |
136 |
tgcattcacttgt |
148 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29396 |
tgcattcacttgt |
29384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University