View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5875-Insertion-3 (Length: 776)

Name: NF5875-Insertion-3
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5875-Insertion-3
NF5875-Insertion-3
[»] chr4 (3 HSPs)
chr4 (7-389)||(32803852-32804234)
chr4 (447-609)||(32804295-32804446)
chr4 (647-776)||(32804516-32804646)
[»] chr1 (2 HSPs)
chr1 (14-389)||(49028673-49029051)
chr1 (493-546)||(49029196-49029248)


Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Original strand, 32803852 - 32804234
Alignment:
Q  7 caagaacctatcgattccgtaaacaaagagaactccattgtcgtagatcggagatccaatgattttgatattgttaacagatgtcacgcgatcggaggaa 106  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32803852 caagaatctatctattccgtaaacaaagagaactccattgtcgtagatcggagatccaatgattttgatattgttaacagatgtcacgcgatcggaggaa 32803951  T
Q  107 gaggtagtgacggttagagactgatcggtgagcatcgttggaagcttagtgccagcgggaagacgccggaggctttgctgcgggagcggtaacatgacga 206  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32803952 gaggtagtgacggttagcgactgaccggtgagcatcgttggaagcttagtgccagcgggaagacgccggaggctttgctgcgggagcggtaagatgacga 32804051  T
Q  207 agtgaaagagaagaagatcgagtgatggttgaccagatttcttgaacgctgaatcggagggagcgaagatggtggtggaaggtgagtgttcaagaagact 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32804052 agtgaaagagaagaagatcgagtgatggttgaccagatttcttgaacgctgaatcggagggagcgaagatggtggcggaaggtgagtgttcaagaagact 32804151  T
Q  307 ttcggcgatttcgagagttagggacatagagtcgaagcctgaatagtagagaatgtcggcggcttcgaaaatggtttggcgag 389  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32804152 ttcggcgagttcgagagttagggacatagagtcgaagcctgaatagtagagaatgtcggcggcttcgaaaatggtttggcgag 32804234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 447 - 609
Target Start/End: Original strand, 32804295 - 32804446
Alignment:
Q  447 gtaacgacgccattgttgaacttgaaatttagcgggaaatgaaagattgttgaagaaatcgtttactccttttcatttaaaaagacagaaacgccccttc 546  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32804295 gtaacgacgccattgttgaacttgaaatttagcgggaaatgaaagattgttgaagaaatcgtttactccttttcatttaaaaagacagaaacgccccttc 32804394  T
Q  547 cataatggagttgtattgtatctgtttgttgccacgttaccatttttactcttccaaccataa 609  Q
    ||           || ||||||||||||||||||||||  |||||| ||||||||||||||||    
T  32804395 ca-----------tactgtatctgtttgttgccacgttggcattttaactcttccaaccataa 32804446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 647 - 776
Target Start/End: Original strand, 32804516 - 32804646
Alignment:
Q  647 ataagttaaaattacaataactattttacaattaaattttctagactaaagattaatatcaacaaaaattac-gaaaaaatgaatgtgtatccaactatc 745  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  32804516 ataagttaaaattgcaataactattttacaattaaattttctagactaaagattaatatcaacaaaaattacaaaaaaaataaatgtgtatccaactatc 32804615  T
Q  746 taacaagaacgtgtgagattaaagttatgtc 776  Q
    ||||||| |||| ||||||||||||||||||    
T  32804616 taacaaggacgtatgagattaaagttatgtc 32804646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 181; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 14 - 389
Target Start/End: Original strand, 49028673 - 49029051
Alignment:
Q  14 ctatcgattccgtaaacaaagagaactccattgtcgtagatcggagatccaatgattttgatattgttaacagatgtcacgcgatcggaggaagaggtag 113  Q
    |||||||||||||||||||  |||||||| | |||||||||||| | |||  |||| ||||||||||||||||| ||||||||||||||| | || ||||    
T  49028673 ctatcgattccgtaaacaagaagaactccgtcgtcgtagatcggcgttccgttgatcttgatattgttaacagaggtcacgcgatcggagaatgatgtag 49028772  T
Q  114 tgacggttagagactgatcggtgagcatcgttggaagcttagtgccagcgggaagacgccggaggctttgctgcgggagcggtaacatgacgaagtgaaa 213  Q
    |||||||||| |||||| |||| |||||||| |||||||||| ||| ||||||||||| || | |||||||||||| |||||||||||||||||||| ||    
T  49028773 tgacggttagcgactgaccggtaagcatcgtcggaagcttagcgccggcgggaagacggcgtaagctttgctgcggaagcggtaacatgacgaagtggaa 49028872  T
Q  214 gagaagaagatcgagtgatggttgaccagatttcttgaacgctgaatcggagggagcgaagatggtggtggaaggtgagtgttcaagaagactttcgg-- 311  Q
      |||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||| ||||| |||  |||| ||||| ||||||  |||||      
T  49028873 acgaagaagatcgagtgaaggttgaccggatttcttgaacgcggaatcggagggagcaaagacggtggcggagtgtgactgttccagaagagattcggcg 49028972  T
Q  312 -cgatttcgagagttagggacatagagtcgaagcctgaatagtagagaatgtcggcggcttcgaaaatggtttggcgag 389  Q
     |||||||||||||||||||||| ||| |||||||||||| |  ||||||||| ||||| ||||||||||||| |||||    
T  49028973 acgatttcgagagttagggacatggagacgaagcctgaatcgaggagaatgtctgcggcgtcgaaaatggtttcgcgag 49029051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 493 - 546
Target Start/End: Original strand, 49029196 - 49029248
Alignment:
Q  493 ttgttgaagaaatcgtttactccttttcatttaaaaagacagaaacgccccttc 546  Q
    ||||||||||||||||| |||||||| |||| |||||||||||||| |||||||    
T  49029196 ttgttgaagaaatcgtt-actcctttccattcaaaaagacagaaacaccccttc 49029248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University