View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5875-Insertion-4 (Length: 549)

Name: NF5875-Insertion-4
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5875-Insertion-4
NF5875-Insertion-4
[»] chr3 (4 HSPs)
chr3 (9-539)||(42534102-42534648)
chr3 (278-459)||(42539020-42539204)
chr3 (98-132)||(31766163-31766197)
chr3 (98-132)||(44771863-44771897)
[»] chr5 (1 HSPs)
chr5 (96-132)||(29923035-29923071)
[»] chr7 (1 HSPs)
chr7 (98-132)||(34536773-34536807)
[»] chr4 (3 HSPs)
chr4 (98-127)||(24364108-24364137)
chr4 (98-131)||(43868272-43868305)
chr4 (145-177)||(51093284-51093316)
[»] chr1 (3 HSPs)
chr1 (140-177)||(4411292-4411329)
chr1 (98-131)||(34730859-34730892)
chr1 (95-132)||(44045110-44045147)


Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 9 - 539
Target Start/End: Complemental strand, 42534648 - 42534102
Alignment:
Q  9 ccatcatcgctattcgtgctgatatcgatggactccctttgcaggttacccctttttagctccttaagtgtgtgtttggtagtgataaatgattttgaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42534648 ccatcatcgctattcgtgctgatatcgatggactccctttgcaggttacccctttttagctccttaagtgtgtgtttggtagtgataaatgattttgaat 42534549  T
Q  109 gaattgattatgtaaaattaatttctgctat----------------aatttaaggctaaaaaacaattgtagaggcaaaagctctgaatgctagttacc 192  Q
    |||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42534548 gaattgattatgtaaaattaatttctgctatgagtgagttgtacataaatttaaggctaaaaaacaattgtagaggcaaaagctctgaatgctagttacc 42534449  T
Q  193 ttagaatcaattctagttgttgaaccaaacatacactgttcttatgctccttgaggagaatattgtttttcaaataaggtaatattttttatctgatgtt 292  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42534448 ttagaatcaattctagttattgaaccaaacatacactgttcttatgctccttgaggagaatattgtttttcaaataaggtaatattttttatctgatgtt 42534349  T
Q  293 ggtgatgcttggttaggaacttgttgagtgggaatacaagagcaaaattgatggcagaatgcatgcttgtggacatgatgctcatgctactatgctatta 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42534348 ggtgatgcttggttaggaacttgttgagtgggaatacaagagcaaaattgatggcagaatgcatgcttgtggacatgatgctcatgctactatgctatta 42534249  T
Q  393 ggggctgcaaagttgctcaatcagcgcaaagataagcttaaggttcttttcaaattgtctgtttctgtattcttatcatttagttttatcactagacttc 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42534248 ggggctgcaaagttgctcaatcagcgcaaagataagcttaaggttcttttcaaattgtctgtttctgtattcttatcatttagttttatcactagacttc 42534149  T
Q  493 ctcttaaggactttcgtattctctacttttttcggtttctacatctt 539  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  42534148 ctcttaaggactttcgtattctctacttttttcgttttctacatctt 42534102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 278 - 459
Target Start/End: Complemental strand, 42539204 - 42539020
Alignment:
Q  278 tttttatctgatgttggtgatgcttggttaggaactt---gttgagtgggaatacaagagcaaaattgatggcagaatgcatgcttgtggacatgatgct 374  Q
    |||| |||||||||   |||||||||||||||| |||   | |||||| |||| |||||||||| || ||||||||||||||||||||||| ||||||||    
T  42539204 ttttgatctgatgtctttgatgcttggttaggagcttagtgatgagtgagaattcaagagcaaagttaatggcagaatgcatgcttgtggagatgatgct 42539105  T
Q  375 catgctactatgctattaggggctgcaaagttgctcaatcagcgcaaagataagcttaaggttcttttcaaattgtctgtttctg 459  Q
    ||||||||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| | ||||||||    
T  42539104 catgctactatgctacttggggctgcaaagttgctcaatcggcgcaaaaataagcttaaggttcttttcaaattatttgtttctg 42539020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 31766163 - 31766197
Alignment:
Q  98 tgattttgaatgaattgattatgtaaaattaattt 132  Q
    |||||||||||||||||||| ||||||||||||||    
T  31766163 tgattttgaatgaattgattttgtaaaattaattt 31766197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 44771897 - 44771863
Alignment:
Q  98 tgattttgaatgaattgattatgtaaaattaattt 132  Q
    |||||||||||||||||||||||||||||| ||||    
T  44771897 tgattttgaatgaattgattatgtaaaattgattt 44771863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 29923071 - 29923035
Alignment:
Q  96 aatgattttgaatgaattgattatgtaaaattaattt 132  Q
    |||||||||||||||||||||||||||||||| ||||    
T  29923071 aatgattttgaatgaattgattatgtaaaattgattt 29923035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 34536807 - 34536773
Alignment:
Q  98 tgattttgaatgaattgattatgtaaaattaattt 132  Q
    |||||||||||||||||||||| ||||||||||||    
T  34536807 tgattttgaatgaattgattatataaaattaattt 34536773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 24364108 - 24364137
Alignment:
Q  98 tgattttgaatgaattgattatgtaaaatt 127  Q
    ||||||||||||||||||||||||||||||    
T  24364108 tgattttgaatgaattgattatgtaaaatt 24364137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 43868305 - 43868272
Alignment:
Q  98 tgattttgaatgaattgattatgtaaaattaatt 131  Q
    |||||||||||||||||||| |||||||||||||    
T  43868305 tgattttgaatgaattgattttgtaaaattaatt 43868272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 51093316 - 51093284
Alignment:
Q  145 aaggctaaaaaacaattgtagaggcaaaagctc 177  Q
    ||||||||||| |||||||||||||||||||||    
T  51093316 aaggctaaaaatcaattgtagaggcaaaagctc 51093284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 4411329 - 4411292
Alignment:
Q  140 aatttaaggctaaaaaacaattgtagaggcaaaagctc 177  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  4411329 aattcaaggctaaaaatcaattgtagaggcaaaagctc 4411292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 34730892 - 34730859
Alignment:
Q  98 tgattttgaatgaattgattatgtaaaattaatt 131  Q
    |||||||||||||||||||||| |||||||||||    
T  34730892 tgattttgaatgaattgattatttaaaattaatt 34730859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 44045147 - 44045110
Alignment:
Q  95 aaatgattttgaatgaattgattatgtaaaattaattt 132  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  44045147 aaatgattttgaatggattgattatgtgaaattaattt 44045110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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