View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5875-Insertion-5 (Length: 487)
Name: NF5875-Insertion-5
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875-Insertion-5 |
 | |
|
| [»] scaffold0137 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0137 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 9 - 371
Target Start/End: Complemental strand, 4353 - 3997
Alignment:
| Q |
9 |
cattggtctctttataatattatcccaagttgatcataatctaagttaaagctatatttggcttcttgcaggaccagctagacgagcattgagcactgat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4353 |
cattggtctctttataatattatcccaagttgatcataatctaagttaaagctatatttggcttcatgcaggaccagctagacgagcattgagcactgat |
4254 |
T |
|
| Q |
109 |
attccatataggttgacggacgg--tgtattcttcctctgaaggagatgtcattttagacttttagtcattccatataagtgttaattaagaatcaccct |
206 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4253 |
attccatataggttgacagacggggtgtattcttcctctgaaggagatgtcattttag--------tcattccatataagtgttaattaagaatcaccct |
4162 |
T |
|
| Q |
207 |
cattaggtccatcttgcttttgattttagtcattagctaggaggacagggatggtctttttgttgttggtttcagtgttgtaggtgctctttcttcaggt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4161 |
cattaggtccatcttgcttttgattttagtcattagctaggaggacagggatggtctttttgttgttggtttcagtgttgtaggtgctctttctttaggt |
4062 |
T |
|
| Q |
307 |
ttggttggggtgtttttgggcattttgtttgttccattcctcatgtacattgattacctttttct |
371 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4061 |
ttggttggggtgtttttgggcattttgtgtgttccattcctcatgtacattgattacctttttct |
3997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 371
Target Start/End: Complemental strand, 3896699 - 3896332
Alignment:
| Q |
9 |
cattggtctctttataatattatcccaagttgatcataatctaagttaaagctatatttggcttcttgcaggaccagctagacgagcattgagcactgat |
108 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896699 |
cattgatctctttataatattatccaaagttgatcataatctaagttaaagctatatttggcttcttgcaggaccagctagacgagcattgagcactgat |
3896600 |
T |
|
| Q |
109 |
attccatataggttgacggacgg--tgtattcttcctctgaaggagatgtcatttta--gac-ttttagtcattccatataagtgttaattaagaatcac |
203 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| | | | | | ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
3896599 |
attccatataggttgacggacggggtgtattcttcctctgaaggagatgtgctatgaatgtcattttagtcattccatataagtattatttaagaatcac |
3896500 |
T |
|
| Q |
204 |
cctcattaggtccatcttgcttttgattttagtcattagctaggaggacagggatggtctttttgttgttggtttcagtgttgtaggtgctctttcttca |
303 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896499 |
cctcattaggtccattttgcttttgattttagtcattagctaggaggacagggatggtctttttgttgttggtttcagtgttgtaggtgctctttcttca |
3896400 |
T |
|
| Q |
304 |
ggtttggttggggtgtttttgggcattttgtttgttccattcctcatgtacattgattacctttttct |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896399 |
ggtttggttggggtgtttttgggcattttgtgtgttccattcctcatgtacattgattacctttttct |
3896332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 487
Target Start/End: Complemental strand, 3889729 - 3889672
Alignment:
| Q |
430 |
tttttaggtatattttccatgtctcatgcaatcttctttcacgacggtatctatagag |
487 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| |
|
|
| T |
3889729 |
tttttaggtatattttccatgtctcctgcaatcttctttcccgatagtatctatagag |
3889672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 46285282 - 46285347
Alignment:
| Q |
33 |
ccaagttgatcataatctaagttaaagctatatttggcttcttgcaggaccagctagacgagcattga |
100 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||| |||| ||||||||||||||| |||| |||| |
|
|
| T |
46285282 |
ccaaattgatcataatctgagttaa-gctatatttggattct-gcaggaccagctagatgagccttga |
46285347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University