View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875-Insertion-6 (Length: 476)
Name: NF5875-Insertion-6
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875-Insertion-6 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0878 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 476
Target Start/End: Original strand, 31329393 - 31329859
Alignment:
| Q |
9 |
ggttccgttgaaggttcatgttggatttgttgcatcgatgctgcagaaatgtcctggaattttgaggctttcgcttagaatggaaaggtgtgaagttttc |
108 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31329393 |
ggttccggtgaaggttcatgttggatttgttgcatcgatgctgcagaaatgtcctgggattttgaggctttcgcttagaatggaaaggtgtgaaattttc |
31329492 |
T |
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| Q |
109 |
cagatccacgttaagaataagattaattgatgaattatataatattgactaatttaatcgagaattaatggtttagtattgtaaaattatataatgcatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31329493 |
cagatccacgttaagaataagattaattgatgaattatatgatattgactaatttaatcgagaattaatggtttagtattgtaaaattatataatgcatg |
31329592 |
T |
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| Q |
209 |
cgtaaattgaaatatgtgtgttgatttctgaagatggatgcacnnnnnnnntagttataatctgaatctcaatttattaattaatcggtttggttataaa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31329593 |
cgtaaattgaaatatgtgtgttgatttctgaagatggatgcacaaaaaaaatagttataatctgaatctcaatttattaattaatcggtttggttataaa |
31329692 |
T |
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| Q |
309 |
aggatgatgnnnnnnnttagatcttataaatgagattgtgtatcagatttgtttgnnnnnnnnnttgtatttatttatgttctaagatttgtgttgtatt |
408 |
Q |
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| T |
31329693 |
aggatgatgaaaaaaattagatcttataaatgagattgtgtatcagatttgtttg-aaaaaaaattgtatttatttatgttctaagatttgtgttgtatt |
31329791 |
T |
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| Q |
409 |
atttatatgttctaagatttgtatagtattataatgttataaatctgatttgtttcattttgcagtga |
476 |
Q |
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| T |
31329792 |
atttatatgttctaagatttgtataatattataatgttataaatctgatttgtttcattttgcagtga |
31329859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0878 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold0878
Description:
Target: scaffold0878; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 283
Target Start/End: Original strand, 2537 - 2810
Alignment:
| Q |
9 |
ggttccgttgaaggttcatgttggatttgttgcatcgatgctgcagaaatgtcctggaattttgaggctttcgcttagaatggaaaggtgtgaagttttc |
108 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2537 |
ggttccggtgaaggttcatgttggatttgttgtatcgatgctgcagaaatgtcatgggattttgaggctttcgcttagaatggaaaggtgtgaaattttc |
2636 |
T |
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| Q |
109 |
cagatccacgttaagaataagattaattgatgaattatataatattgactaatttaatcgagaattaatggtttagtattgtaaaattatataatgcatg |
208 |
Q |
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| T |
2637 |
cagatccacattaacaataagattaattgatgaattatataatattgactaatttaatcgagaattaatggtttagtattgtaaaattatataatgcatg |
2736 |
T |
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| Q |
209 |
cgtaaattgaaatatgtgtgttgatttctgaagatggatgcacnnnnnnnntagttataatctgaatctcaattt |
283 |
Q |
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| T |
2737 |
gtcaaattgaaatatgtgtgttgatttctgaagatggatgcac-aaaaaaatagttataatctgaatctcaattt |
2810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 283
Target Start/End: Original strand, 27891850 - 27892122
Alignment:
| Q |
9 |
ggttccgttgaaggttcatgttggatttgttgcatcgatgctgcagaaatgtcctggaattttgaggctttcgcttagaatggaaaggtgtgaagttttc |
108 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
27891850 |
ggttccggtgaaggttcatgttggatttgttgcatcgatgctgcataaatgtcttgggattttgaggctttcgcttagaatggaaaggtatgaaattttc |
27891949 |
T |
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| Q |
109 |
cagatccacgttaagaataagattaattgatgaattatataatattgactaatttaatcgagaattaatggtttagtattgtaaaattatataatgcatg |
208 |
Q |
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| T |
27891950 |
cagatccacgttaacaataagattaat-gatgaattatataatattgattaatttaatcgagaattaatggtttagtattgtaaaattatataatgcatg |
27892048 |
T |
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| Q |
209 |
cgtaaattgaaatatgtgtgttgatttctgaagatggatgcacnnnnnnnntagttataatctgaatctcaattt |
283 |
Q |
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| T |
27892049 |
cgtaaattgaaatatgtgtgttgatttctgaagatggatgcac-aaaaaaatagttataatctgaatctcaattt |
27892122 |
T |
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