View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875-Insertion-9 (Length: 145)
Name: NF5875-Insertion-9
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 27725017 - 27724909
Alignment:
| Q |
9 |
cacagaaacccgaaggatcaccaaagcttgcaaattcaacagccgtaannnnnnnctggtctggacatgtgataaaagcttctggagtcagattctctcc |
108 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| || |
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| T |
27725017 |
cacagaaacccgaaggatcaccaaagcttgcaaactcaacagccgtaatttttttctggtccggacacgtgataaaagcttctggagtcagattctcccc |
27724918 |
T |
|
| Q |
109 |
cacaggttc |
117 |
Q |
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|||| |||| |
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| T |
27724917 |
cacacgttc |
27724909 |
T |
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