View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_high_10 (Length: 451)
Name: NF5875_high_10
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 129 - 443
Target Start/End: Original strand, 49229767 - 49230089
Alignment:
| Q |
129 |
aaattaaataccacataaaatatccaat--------cttaacatccggttttagttagacctttgcaaagttcgtttaatttgcacctatatttaaaaag |
220 |
Q |
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| T |
49229767 |
aaattaaataccacataaaatatccaatctaacaatcttaacatccggttttagttagacctttgcaaagttcgtttaatttgcacctatatttaaaaag |
49229866 |
T |
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| Q |
221 |
aaaatactcatttttaacaaatgccgttgattcaaaaaagcatacaaacataagaaaggtattaatggtgtgatattattttttaagggtactagtatta |
320 |
Q |
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| T |
49229867 |
aaaatactcatttttaacaaatgccgttgattcaaaaaagcatacaaacataagaaaggtattaatggtgtgatattattttttaagggtactagtatta |
49229966 |
T |
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| Q |
321 |
tagatatgattttcacctattccaatttgtccggtcaaatatagaaataattgcatgtatgttgatgttggatcatgagagcagttcaaagaaaaaatca |
420 |
Q |
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| T |
49229967 |
tagatatgattttcacctattccaatttgtccagtcaaatatagaaataattgcatgtatgttgatgttggatcatgagagcagttcgaagaaagaatca |
49230066 |
T |
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| Q |
421 |
ttcacattttgtcaagaataatc |
443 |
Q |
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|||| |||||||||||||||||| |
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| T |
49230067 |
ttcatattttgtcaagaataatc |
49230089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 49229530 - 49229650
Alignment:
| Q |
16 |
catatgaactttgattgaatttcattaatttgcttgaaaatttgggaaaaatatttt-ttagacgaaattacaaactcccttcacacaaaatggaaaaac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49229530 |
catatgaactttgattgaatttcattaatttgcttgaaaaattggggaaaatatttttttagacgaaattacaaactcccttcacacaaaatggaaaaac |
49229629 |
T |
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| Q |
115 |
acaaatttaacatgaaattaa |
135 |
Q |
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||||||||||||||||||||| |
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| T |
49229630 |
acaaatttaacatgaaattaa |
49229650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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