View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5875_high_12 (Length: 420)

Name: NF5875_high_12
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5875_high_12
NF5875_high_12
[»] chr3 (11 HSPs)
chr3 (140-354)||(29189347-29189571)
chr3 (4-56)||(46886727-46886779)
chr3 (5-51)||(2719456-2719502)
chr3 (5-51)||(18405867-18405913)
chr3 (5-51)||(22203418-22203464)
chr3 (5-51)||(28622035-28622081)
chr3 (5-47)||(39602246-39602288)
chr3 (142-176)||(45730044-45730078)
chr3 (14-51)||(25447289-25447326)
chr3 (14-51)||(32095236-32095273)
chr3 (5-46)||(33405203-33405244)
[»] chr5 (10 HSPs)
chr5 (1-164)||(41016452-41016615)
chr5 (5-115)||(41018050-41018161)
chr5 (8-47)||(15246825-15246864)
chr5 (125-164)||(41017976-41018015)
chr5 (5-47)||(12425563-12425605)
chr5 (5-51)||(32942606-32942652)
chr5 (5-47)||(39105456-39105498)
chr5 (14-51)||(443923-443960)
chr5 (6-47)||(28776985-28777026)
chr5 (135-164)||(35070012-35070041)
[»] chr8 (3 HSPs)
chr8 (9-51)||(8062317-8062359)
chr8 (8-51)||(32841347-32841390)
chr8 (5-46)||(18931334-18931375)
[»] chr4 (6 HSPs)
chr4 (5-47)||(35571667-35571709)
chr4 (5-44)||(20031744-20031783)
chr4 (14-52)||(679242-679280)
chr4 (5-51)||(16200017-16200063)
chr4 (13-46)||(46860360-46860393)
chr4 (1-46)||(50800061-50800106)
[»] chr6 (4 HSPs)
chr6 (5-47)||(9093592-9093634)
chr6 (125-161)||(10536417-10536453)
chr6 (5-41)||(835285-835321)
chr6 (16-52)||(1401096-1401132)
[»] chr1 (9 HSPs)
chr1 (5-51)||(7137034-7137080)
chr1 (8-46)||(26946486-26946524)
chr1 (5-51)||(34290224-34290270)
chr1 (5-52)||(9572144-9572191)
chr1 (8-51)||(45975678-45975721)
chr1 (5-51)||(24915087-24915133)
chr1 (5-51)||(27976583-27976629)
chr1 (5-47)||(49888759-49888801)
chr1 (141-178)||(24462205-24462242)
[»] chr7 (5 HSPs)
chr7 (6-51)||(39907791-39907836)
chr7 (5-47)||(12110352-12110394)
chr7 (5-51)||(33678768-33678814)
chr7 (9-46)||(28340884-28340921)
chr7 (5-46)||(38010707-38010748)
[»] chr2 (7 HSPs)
chr2 (5-46)||(18066121-18066162)
chr2 (8-51)||(33931609-33931652)
chr2 (5-51)||(12464509-12464555)
chr2 (9-46)||(938550-938587)
chr2 (5-46)||(22681221-22681262)
chr2 (14-51)||(30990419-30990456)
chr2 (14-46)||(25800822-25800854)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 140 - 354
Target Start/End: Complemental strand, 29189571 - 29189347
Alignment:
Q  140 agacacaccttcaatcagaa--gtgtctatgcaacaaagatgagtttggcaaaatc--------gtgattctaatgaagtttcaaagtgtgacttttctc 229  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||         || |||||| ||||||||||||||||||||||||||    
T  29189571 agacacaccttcaatcagaattgtgtctatgcaacagagatgagtttggcaaaataacgacattgtaattctattgaagtttcaaagtgtgacttttctc 29189472  T
Q  230 aaaatcatgatggcaaagtgtgattctacaagattcactatcaatctaaatatagaccaagatcacaaacaagtagaattagatcatagtggtgccaagt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29189471 aaaatcatgatggcaaagtgtgattctacaagattcactatcaatctaaatatagaccaagatcacaaacaagtagaattagatcatagtggtgccaagt 29189372  T
Q  330 gtcatctagtagaatattcttggtc 354  Q
    |||||||||||||||||||||||||    
T  29189371 gtcatctagtagaatattcttggtc 29189347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 46886727 - 46886779
Alignment:
Q  4 aaagttctctaagatagcttatgaaaacggcttatagcttatacaaaagtaat 56  Q
    ||||||||| |||||||||||||||||| |||||||||| |||||||| ||||    
T  46886727 aaagttctccaagatagcttatgaaaacagcttatagctcatacaaaaataat 46886779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 2719502 - 2719456
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    |||||||| |||||||||||||||||| | |||||||||| ||||||    
T  2719502 aagttctccaagatagcttatgaaaacagtttatagcttaaacaaaa 2719456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 18405867 - 18405913
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    |||||||| ||||||||||||||||||  |||||||| |||||||||    
T  18405867 aagttctccaagatagcttatgaaaacaacttatagcatatacaaaa 18405913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 22203464 - 22203418
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    |||||||| ||||||||||||||||||  ||||||| ||||||||||    
T  22203464 aagttctccaagatagcttatgaaaacaacttatagattatacaaaa 22203418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 28622035 - 28622081
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    |||||||| ||||||| |||||||||| |||||||||||| ||||||    
T  28622035 aagttctcgaagatagtttatgaaaacagcttatagcttacacaaaa 28622081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 39602246 - 39602288
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatac 47  Q
    |||||||| |||||||||||||||||| ||||||| |||||||    
T  39602246 aagttctcaaagatagcttatgaaaacagcttataacttatac 39602288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 176
Target Start/End: Complemental strand, 45730078 - 45730044
Alignment:
Q  142 acacaccttcaatcagaagtgtctatgcaacaaag 176  Q
    ||||||||||||||||||||||| |||||||||||    
T  45730078 acacaccttcaatcagaagtgtccatgcaacaaag 45730044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 25447289 - 25447326
Alignment:
Q  14 aagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    |||||||||||||||||| | |||||||||||||||||    
T  25447289 aagatagcttatgaaaacagtttatagcttatacaaaa 25447326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 32095236 - 32095273
Alignment:
Q  14 aagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  32095236 aagatagattatgaaaacggcttatagtttatacaaaa 32095273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 33405203 - 33405244
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttata 46  Q
    |||||||  |||||||||||||||||| ||||||||||||||    
T  33405203 aagttcttcaagatagcttatgaaaacagcttatagcttata 33405244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 9e-83; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 41016615 - 41016452
Alignment:
Q  1 tccaaagttctctaagatagcttatgaaaacggcttatagcttatacaaaagtaatattgttaacctatgaagcattgacactgacacgtccacactggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  41016615 tccaaagttctctaagatagcttatgaaaacggcttatagcttatacaaaagtaatattgttaacccctgaagcattgacactgacacgtccacactggt 41016516  T
Q  101 agtaatttcaaaaaattacatgtggtcgtgtcagacactagacacaccttcaatcagaagtgtc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41016515 agtaatttcaaaaaattacatgtggtcgtgtcagacactagacacaccttcaatcagaagtgtc 41016452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 41018161 - 41018050
Alignment:
Q  5 aagttctctaagat-agcttatgaaaacggcttatagcttatacaaaagtaatattgttaacctatgaagcattgacactgacacgtccacactggtagt 103  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  41018161 aagttctctaagattagcttatgaaaacggcttatatcttatacaaaagtaatattgttaacctatgaagcattgacattgacacgtacacactggtagt 41018062  T
Q  104 aatttcaaaaaa 115  Q
    ||||| ||||||    
T  41018061 aatttaaaaaaa 41018050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 15246864 - 15246825
Alignment:
Q  8 ttctctaagatagcttatgaaaacggcttatagcttatac 47  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  15246864 ttctctaagatagcttatgaaaacagctcatagcttatac 15246825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 41018015 - 41017976
Alignment:
Q  125 gtcgtgtcagacactagacacaccttcaatcagaagtgtc 164  Q
    ||||| |||||||| |||||||||||||||||||||||||    
T  41018015 gtcgtatcagacaccagacacaccttcaatcagaagtgtc 41017976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 12425605 - 12425563
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatac 47  Q
    |||||||| |||||||||| ||||||| |||||||||||||||    
T  12425605 aagttctccaagatagcttgtgaaaacagcttatagcttatac 12425563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 32942652 - 32942606
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    |||||||| |||||||||||||||||| ||||||||| |||| ||||    
T  32942652 aagttctccaagatagcttatgaaaacagcttatagcatataaaaaa 32942606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 39105498 - 39105456
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatac 47  Q
    |||||||| |||||||||||||||||| | |||||||||||||    
T  39105498 aagttctccaagatagcttatgaaaacagattatagcttatac 39105456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 443960 - 443923
Alignment:
Q  14 aagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  443960 aagatagcttatgaaaacatcttatagcttatacaaaa 443923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 28777026 - 28776985
Alignment:
Q  6 agttctctaagatagcttatgaaaacggcttatagcttatac 47  Q
    ||||||| |||||||||||||||||| ||||||||| |||||    
T  28777026 agttctccaagatagcttatgaaaacagcttatagcctatac 28776985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 35070041 - 35070012
Alignment:
Q  135 acactagacacaccttcaatcagaagtgtc 164  Q
    ||||||||||||||||||||||||||||||    
T  35070041 acactagacacaccttcaatcagaagtgtc 35070012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 8062359 - 8062317
Alignment:
Q  9 tctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  8062359 tctctaagatagcttatgaaaacagcttatagcttatacaaaa 8062317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 32841347 - 32841390
Alignment:
Q  8 ttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    ||||| |||||||||||||||||| |||||||||||||||||||    
T  32841347 ttctccaagatagcttatgaaaacagcttatagcttatacaaaa 32841390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 18931334 - 18931375
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttata 46  Q
    |||||||||| |||||||||||||||| ||||| ||||||||    
T  18931334 aagttctctaggatagcttatgaaaacagcttacagcttata 18931375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 35571667 - 35571709
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatac 47  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  35571667 aagttctctaagatagcttatgaaaacagcttatagcttatac 35571709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 20031783 - 20031744
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagctta 44  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  20031783 aagttctctaaaatagcttatgaaaactgcttatagctta 20031744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 679280 - 679242
Alignment:
Q  14 aagatagcttatgaaaacggcttatagcttatacaaaag 52  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  679280 aagataacttatgaaaacagcttatagcttatacaaaag 679242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 16200017 - 16200063
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    |||| ||| |||||||||||||||||| ||||||||| |||||||||    
T  16200017 aagtcctccaagatagcttatgaaaacagcttatagcatatacaaaa 16200063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 46860393 - 46860360
Alignment:
Q  13 taagatagcttatgaaaacggcttatagcttata 46  Q
    ||||| ||||||||||||||||||||||||||||    
T  46860393 taagaaagcttatgaaaacggcttatagcttata 46860360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 50800061 - 50800106
Alignment:
Q  1 tccaaagttctctaagatagcttatgaaaacggcttatagcttata 46  Q
    |||||||||||| | ||||||||| |||||| ||||||||||||||    
T  50800061 tccaaagttctccatgatagcttaagaaaacagcttatagcttata 50800106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 9093592 - 9093634
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatac 47  Q
    ||||||||||||| ||||||||||||| |||||||||||||||    
T  9093592 aagttctctaagacagcttatgaaaacagcttatagcttatac 9093634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 10536417 - 10536453
Alignment:
Q  125 gtcgtgtcagacactagacacaccttcaatcagaagt 161  Q
    |||||||| ||||||||||||||||||||||||||||    
T  10536417 gtcgtgtcggacactagacacaccttcaatcagaagt 10536453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 835285 - 835321
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagc 41  Q
    |||||||| |||||||||||||||||| |||||||||    
T  835285 aagttctccaagatagcttatgaaaactgcttatagc 835321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 1401132 - 1401096
Alignment:
Q  16 gatagcttatgaaaacggcttatagcttatacaaaag 52  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  1401132 gatagcttatgaaaacagcttatagcttatactaaag 1401096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 7137034 - 7137080
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    |||||||| |||||||||||||||||| |||||||| ||||||||||    
T  7137034 aagttctccaagatagcttatgaaaacagcttatagattatacaaaa 7137080  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 26946486 - 26946524
Alignment:
Q  8 ttctctaagatagcttatgaaaacggcttatagcttata 46  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  26946486 ttctctaagatagcttatgaaaacgacttatagcttata 26946524  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 34290270 - 34290224
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    |||||||  |||||||||||||||||| |||||||||||||||||||    
T  34290270 aagttcttcaagatagcttatgaaaacagcttatagcttatacaaaa 34290224  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 9572144 - 9572191
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatacaaaag 52  Q
    |||||||| | ||| || ||||||||||||||||||||||||||||||    
T  9572144 aagttctcaatgatggcatatgaaaacggcttatagcttatacaaaag 9572191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 45975721 - 45975678
Alignment:
Q  8 ttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||    
T  45975721 ttctccaagatagcttatgaaaacagcttgtagcttatacaaaa 45975678  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 24915087 - 24915133
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    |||||||| |||| ||||||||||||| ||||||||| |||||||||    
T  24915087 aagttctccaagacagcttatgaaaacagcttatagcatatacaaaa 24915133  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 27976629 - 27976583
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    |||||||| ||||||||||||||||||  |||||||| |||||||||    
T  27976629 aagttctcgaagatagcttatgaaaacaacttatagcatatacaaaa 27976583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 49888801 - 49888759
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatac 47  Q
    |||||||||||||||||||||||||||  || |||||||||||    
T  49888801 aagttctctaagatagcttatgaaaacaactaatagcttatac 49888759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 24462242 - 24462205
Alignment:
Q  141 gacacaccttcaatcagaagtgtctatgcaacaaagat 178  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  24462242 gacacgccttcaatcagaagtgtctgtgcaacaaagat 24462205  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 39907836 - 39907791
Alignment:
Q  6 agttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    ||||||||||||||| |||||||||| | |||||||||||||||||    
T  39907836 agttctctaagatagtttatgaaaacagtttatagcttatacaaaa 39907791  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 12110394 - 12110352
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatac 47  Q
    |||||||  |||||||||||||||||| |||||||||||||||    
T  12110394 aagttcttcaagatagcttatgaaaacagcttatagcttatac 12110352  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 33678814 - 33678768
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    ||||| || |||||||||||||||||| ||||||||||| |||||||    
T  33678814 aagttttccaagatagcttatgaaaacagcttatagcttttacaaaa 33678768  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 28340884 - 28340921
Alignment:
Q  9 tctctaagatagcttatgaaaacggcttatagcttata 46  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  28340884 tctctaggatagcttatgaaaacagcttatagcttata 28340921  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 38010748 - 38010707
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttata 46  Q
    |||||||||| ||||| |||||||||| ||||||||||||||    
T  38010748 aagttctctaggatagattatgaaaacagcttatagcttata 38010707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 18066162 - 18066121
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttata 46  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  18066162 aagttctccaagatagcttatgaaaacagcttatagcttata 18066121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 33931609 - 33931652
Alignment:
Q  8 ttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    ||||| || ||||||||||||||| |||||||||||||||||||    
T  33931609 ttctccaaaatagcttatgaaaacagcttatagcttatacaaaa 33931652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 12464509 - 12464555
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    |||||||| |||||||||||||||||  ||||||||| |||||||||    
T  12464509 aagttctccaagatagcttatgaaaatagcttatagcatatacaaaa 12464555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 938550 - 938587
Alignment:
Q  9 tctctaagatagcttatgaaaacggcttatagcttata 46  Q
    |||||||||||||||||||| || ||||||||||||||    
T  938550 tctctaagatagcttatgaataccgcttatagcttata 938587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 22681221 - 22681262
Alignment:
Q  5 aagttctctaagatagcttatgaaaacggcttatagcttata 46  Q
    |||||||||| ||||| |||||||||| ||||||||||||||    
T  22681221 aagttctctaggatagattatgaaaacagcttatagcttata 22681262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 30990419 - 30990456
Alignment:
Q  14 aagatagcttatgaaaacggcttatagcttatacaaaa 51  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  30990419 aagatatcttatgaaaacagcttatagcttatacaaaa 30990456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 25800854 - 25800822
Alignment:
Q  14 aagatagcttatgaaaacggcttatagcttata 46  Q
    |||||||||||||||||| ||||||||||||||    
T  25800854 aagatagcttatgaaaacagcttatagcttata 25800822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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