View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5875_high_13 (Length: 411)

Name: NF5875_high_13
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5875_high_13
NF5875_high_13
[»] chr6 (16 HSPs)
chr6 (18-392)||(34898644-34899016)
chr6 (234-345)||(1485125-1485235)
chr6 (185-305)||(34620921-34621041)
chr6 (185-305)||(34748358-34748478)
chr6 (184-298)||(882728-882842)
chr6 (197-305)||(34027359-34027467)
chr6 (234-305)||(31305826-31305897)
chr6 (261-305)||(2234550-2234595)
chr6 (267-345)||(30926790-30926868)
chr6 (197-301)||(25388116-25388219)
chr6 (234-305)||(4910943-4911014)
chr6 (182-271)||(434163-434253)
chr6 (175-229)||(19601372-19601426)
chr6 (187-229)||(34026417-34026459)
chr6 (249-305)||(852567-852623)
chr6 (245-305)||(17225887-17225947)
[»] chr7 (11 HSPs)
chr7 (173-345)||(27571858-27572029)
chr7 (187-345)||(38123598-38123755)
chr7 (182-305)||(45557400-45557523)
chr7 (175-303)||(40561678-40561806)
chr7 (175-285)||(33853404-33853514)
chr7 (181-305)||(22310385-22310509)
chr7 (235-301)||(40795969-40796035)
chr7 (197-301)||(12306760-12306866)
chr7 (234-303)||(41788353-41788422)
chr7 (175-204)||(45823307-45823336)
chr7 (197-305)||(40491613-40491721)
[»] chr4 (12 HSPs)
chr4 (173-288)||(33843763-33843878)
chr4 (234-305)||(55927749-55927820)
chr4 (259-305)||(4243422-4243468)
chr4 (265-305)||(33844012-33844052)
chr4 (234-305)||(8604601-8604672)
chr4 (178-229)||(48045675-48045726)
chr4 (259-305)||(2207114-2207160)
chr4 (239-305)||(32818354-32818420)
chr4 (235-280)||(25319108-25319153)
chr4 (259-296)||(32100336-32100373)
chr4 (245-305)||(10185229-10185289)
chr4 (245-304)||(16551993-16552050)
[»] chr2 (11 HSPs)
chr2 (179-305)||(1976788-1976916)
chr2 (234-305)||(44439289-44439360)
chr2 (234-280)||(15220840-15220886)
chr2 (234-305)||(16013683-16013760)
chr2 (233-303)||(37420171-37420243)
chr2 (245-339)||(42982546-42982639)
chr2 (166-204)||(11650668-11650706)
chr2 (259-305)||(42741012-42741058)
chr2 (233-278)||(40401621-40401666)
chr2 (175-219)||(3476349-3476393)
chr2 (234-278)||(4908852-4908896)
[»] scaffold0361 (1 HSPs)
scaffold0361 (234-305)||(14093-14164)
[»] chr3 (15 HSPs)
chr3 (177-301)||(36302222-36302348)
chr3 (180-305)||(46853459-46853584)
chr3 (259-336)||(30301002-30301079)
chr3 (166-305)||(51285605-51285744)
chr3 (237-345)||(40147832-40147939)
chr3 (259-345)||(35058357-35058443)
chr3 (236-305)||(35264392-35264461)
chr3 (234-338)||(27266773-27266876)
chr3 (239-305)||(31708223-31708289)
chr3 (179-280)||(5406964-5407061)
chr3 (246-305)||(37335025-37335084)
chr3 (179-298)||(40136096-40136214)
chr3 (195-305)||(3776557-3776667)
chr3 (234-304)||(35253446-35253516)
chr3 (234-295)||(29475364-29475425)
[»] chr1 (21 HSPs)
chr1 (234-339)||(48548993-48549095)
chr1 (180-295)||(1233350-1233465)
chr1 (259-301)||(28287340-28287382)
chr1 (240-305)||(213522-213587)
chr1 (233-298)||(1514385-1514450)
chr1 (175-276)||(6932104-6932205)
chr1 (259-345)||(8381962-8382047)
chr1 (259-303)||(20026168-20026212)
chr1 (259-303)||(24587949-24587993)
chr1 (233-297)||(52263625-52263689)
chr1 (234-305)||(4458421-4458492)
chr1 (234-305)||(34915101-34915172)
chr1 (259-305)||(7790646-7790692)
chr1 (260-305)||(47892393-47892438)
chr1 (237-305)||(3016197-3016265)
chr1 (245-305)||(10324928-10324988)
chr1 (265-305)||(17284131-17284171)
chr1 (234-305)||(30557539-30557608)
chr1 (249-301)||(30850393-30850445)
chr1 (207-271)||(35961437-35961501)
chr1 (246-302)||(52339719-52339775)
[»] chr8 (9 HSPs)
chr8 (196-301)||(16972005-16972110)
chr8 (234-301)||(32927931-32927998)
chr8 (234-305)||(35495295-35495366)
chr8 (259-305)||(13384658-13384704)
chr8 (234-305)||(32767422-32767495)
chr8 (180-226)||(38386430-38386476)
chr8 (176-276)||(2778577-2778677)
chr8 (197-305)||(26100088-26100196)
chr8 (175-203)||(43024963-43024991)
[»] chr5 (8 HSPs)
chr5 (180-305)||(15368508-15368632)
chr5 (234-302)||(8591519-8591587)
chr5 (199-286)||(35138967-35139054)
chr5 (235-305)||(36639972-36640042)
chr5 (258-295)||(7925431-7925468)
chr5 (175-220)||(9952555-9952600)
chr5 (260-304)||(9185020-9185064)
chr5 (236-280)||(37886019-37886063)


Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 34899016 - 34898644
Alignment:
Q  18 attaggtcatggaaagtggatcaacaattttcgaccccctttaaggaaggtctttcttggcaggcacacagaggtcccgttcttgccatgatcataagca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899016 attaggtcatggaaagtggatcaacaattttcgaccccctttaaggaaggtctttcttggcaggcacacagaggtcccgttcttgccatgatcataagca 34898917  T
Q  118 gctacggtaggcctctccctctagtagtcttttcaaaattaagtgtatgtttggcgttgacaaaaattgattttgattgaattgattctggcttaaagtg 217  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34898916 gctacggtaggcctctccctctagtagtattttcaaaattaagtgtatgtttggcgttgacaaaaattgattttgattgaattgattctggc-taaagtg 34898818  T
Q  218 agtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctcca 317  Q
    |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| |    
T  34898817 agtcgaaggtaatacaatttatg-ttcgatacatttgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaataaaaaaactcta 34898719  T
Q  318 atttctagcttcaagtagaatcgattctcaccacttatttgctaacttactgtttcttcgtctaggtgatctctg 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34898718 atttctagcttcaagtagaatcgattctcaccacttatttgctaatttactgtttcttcgtctaggtgatctctg 34898644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 345
Target Start/End: Original strand, 1485125 - 1485235
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagt 333  Q
    ||||| |||| |||||| |  ||| |||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||| |||||||    
T  1485125 atttacgtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaat-caaaagctccaatttctagattcaagt 1485223  T
Q  334 agaatcgattct 345  Q
    |||||| |||||    
T  1485224 agaatcaattct 1485235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 34621041 - 34620921
Alignment:
Q  185 tgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgag 284  Q
    ||||||||| ||||| ||||||||||  || ||||| |||| |||    |||||||||| ||||||||  ||| ||||||||||||| ||||||||  ||    
T  34621041 tgattttgagtgaatggattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttag 34620942  T
Q  285 tgttaaaatcaattctagaat 305  Q
    ||| |||||||||||||||||    
T  34620941 tgtaaaaatcaattctagaat 34620921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 34748478 - 34748358
Alignment:
Q  185 tgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgag 284  Q
    ||||||||| ||||| ||||||||||  || ||||| |||| |||    |||||||||| ||||||||  ||| ||||||||||||| ||||||||  ||    
T  34748478 tgattttgagtgaatggattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttag 34748379  T
Q  285 tgttaaaatcaattctagaat 305  Q
    ||| |||||||||||||||||    
T  34748378 tgtaaaaatcaattctagaat 34748358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 298
Target Start/End: Complemental strand, 882842 - 882728
Alignment:
Q  184 ttgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcga 283  Q
    |||| ||||| |||||||||||| | | ||| ||||| |||| ||| |  |||||||||| ||||||||| ||  |||||||||| ||||||||||| ||    
T  882842 ttgagtttgagtgaattgattctagttaaaattgagttgaaggtaaaatgatttatgtttggatacattcatgcaaaagtgagttaaacaataaatttga 882743  T
Q  284 gtgttaaaatcaatt 298  Q
     ||| ||||||||||    
T  882742 atgtaaaaatcaatt 882728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 305
Target Start/End: Original strand, 34027359 - 34027467
Alignment:
Q  197 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 296  Q
    |||||||| ||||| ||||||||| |||  | | ||  |||||| || |||| |||| ||| | ||||||||||| |||||||| |||||| ||||||||    
T  34027359 aattgattgtggctaaaagtgagttgaaagtgagacggtttatggttagatatattcatgtaagagtgagttgaataataaatttgagtgtaaaaatcaa 34027458  T
Q  297 ttctagaat 305  Q
    |||||||||    
T  34027459 ttctagaat 34027467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 31305826 - 31305897
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||| |||| |||  ||| |||||||||||| ||||||||| ||||||  ||||||||||||||||    
T  31305826 atttatgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaat 31305897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 2234595 - 2234550
Alignment:
Q  261 agtgagttgaacaa-taaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  2234595 agtgagttgaacaaataaatttgagtgttaaaatcaattctagaat 2234550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 30926790 - 30926868
Alignment:
Q  267 ttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaag-tagaatcgattct 345  Q
    |||||||||||||| |||||| |||||||||||||||||       |||||||||||||||||||| ||||||| |||||    
T  30926790 ttgaacaataaatttgagtgtaaaaatcaattctagaat-aaaaaactccaatttctagcttcaagttagaatccattct 30926868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 25388219 - 25388116
Alignment:
Q  197 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 296  Q
    ||||||||||| |||||| ||||| | || |||||  |||||  ||| |||| |||  ||| |||||||||||| ||||||||| |||||| ||||||||    
T  25388219 aattgattctgacttaaaatgagttggaggtaatatgatttacatttggatatatttatgtaaaagtgagttga-caataaatttgagtgtcaaaatcaa 25388121  T
Q  297 ttcta 301  Q
    |||||    
T  25388120 ttcta 25388116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 4911014 - 4910943
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||| ||||||||  ||| ||||||||| |||| ||||||| |  ||| |||||||||||||||||    
T  4911014 atttatgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaat 4910943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 434163 - 434253
Alignment:
Q  182 aattgattttga-ttgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaa 271  Q
    |||||||||||| |||||| |||| ||||| ||||||||| | || ||| |  |||| ||||| |||| |||||||| |||||||||||||    
T  434163 aattgattttgagttgaatggattatggctaaaagtgagttgcaggtaaaatgatttgtgtttggatatattcgtgtaaaagtgagttgaa 434253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 19601372 - 19601426
Alignment:
Q  175 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataa 229  Q
    |||||||||||||||||||||||||||||| |  || | ||||||| ||||||||    
T  19601372 tgacaaaaattgattttgattgaattgattttaactaatagtgagttgaagataa 19601426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 34026417 - 34026459
Alignment:
Q  187 attttgattgaattgattctggcttaaagtgagtcgaagataa 229  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||    
T  34026417 attttgagtgaattgattctggctaaaagtgagttgaagataa 34026459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 852623 - 852567
Alignment:
Q  249 cattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    ||||| ||| |||||||||| ||||||| ||| | |||| |||||||||||||||||    
T  852623 cattcatgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaattctagaat 852567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 17225947 - 17225887
Alignment:
Q  245 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    ||||||||| ||| ||| |||||||||| ||||||| |  ||| |||||||||||||||||    
T  17225947 gatacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaat 17225887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 173 - 345
Target Start/End: Complemental strand, 27572029 - 27571858
Alignment:
Q  173 gttgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaac 272  Q
    ||||||||||||||||||||  |||||||||| ||||| |||||||||  ||| ||| |  ||||||| || ||||||||  ||| || ||||||||||     
T  27572029 gttgacaaaaattgattttgggtgaattgattatggctaaaagtgagttaaaggtaaaatgatttatggttggatacatttatgtaaatgtgagttgaat 27571930  T
Q  273 aataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 345  Q
    |||||| | ||||||||||||||||||||||||       |||||||||||| |||||||||||||| |||||    
T  27571929 aataaacttgagtgttaaaatcaattctagaat-caaaagctccaatttctaacttcaagtagaatcaattct 27571858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 345
Target Start/End: Original strand, 38123598 - 38123755
Alignment:
Q  187 attttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtg 286  Q
    ||||||| | |||||||| || || ||| ||||| |||| |||   ||||| ||||  || |||||| ||| |||||||||||| ||||||||| |||||    
T  38123598 attttgagtaaattgattatgactaaaattgagttgaaggtaaagtaatttgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtg 38123697  T
Q  287 ttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 345  Q
    | |||||||||||||||||       || |||||||||||||||||||||||| |||||    
T  38123698 taaaaatcaattctagaat-tagaagctacaatttctagcttcaagtagaatcaattct 38123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 182 - 305
Target Start/End: Complemental strand, 45557523 - 45557400
Alignment:
Q  182 aattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattc 281  Q
    |||||||||||| ||||||||||||| || ||||||||| |||| |||    |||| ||||| ||||||||| ||| |||||||||||| | | |||||     
T  45557523 aattgattttgaatgaattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaattt 45557424  T
Q  282 gagtgttaaaatcaattctagaat 305  Q
    | |||| ||||||||| |||||||    
T  45557423 gtgtgtaaaaatcaatcctagaat 45557400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 303
Target Start/End: Original strand, 40561678 - 40561806
Alignment:
Q  175 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 274  Q
    |||||||| |||||||||| |||||||||||| |   ||| ||||| |||  |||    |||||||||| ||||||||| ||| ||||||||||||||||    
T  40561678 tgacaaaagttgattttgagtgaattgattctagtaaaaattgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaacaa 40561777  T
Q  275 taaattcgagtgttaaaatcaattctaga 303  Q
    || ||| ||||||  |||| |||||||||    
T  40561778 tatatttgagtgtataaattaattctaga 40561806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 285
Target Start/End: Original strand, 33853404 - 33853514
Alignment:
Q  175 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 274  Q
    ||||||||||||||||| | |||||||||||||||| | ||||||| |||| |||    |||||||||| ||||||||| ||| ||||  || || ||||    
T  33853404 tgacaaaaattgatttttagtgaattgattctggctaagagtgagttgaagctaaagtgatttatgtttggatacattcatgtaaaagcaagctggacaa 33853503  T
Q  275 taaattcgagt 285  Q
    |||||| ||||    
T  33853504 taaatttgagt 33853514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 305
Target Start/End: Original strand, 22310385 - 22310509
Alignment:
Q  181 aaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 280  Q
    ||||||||||||| || ||||| | |||   ||| ||||| |||||||| |  |||||||||| |||||||||  || ||||||| ||||| ||||||||    
T  22310385 aaattgattttgagtggattgagtttggtaaaaattgagttgaagataaaaagatttatgtttggatacattctcgtaaaagtgaattgaaaaataaatt 22310484  T
Q  281 cgagtgttaaaatcaattctagaat 305  Q
      ||||| ||||| |||||||||||    
T  22310485 taagtgtaaaaattaattctagaat 22310509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 40795969 - 40796035
Alignment:
Q  235 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 301  Q
    |||||| || ||||||||| ||| ||||||| ||||| | |||||| ||||||||||||||||||||    
T  40795969 tttatgattggatacattcatgtaaaagtgatttgaatagtaaatttgagtgttaaaatcaattcta 40796035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 12306866 - 12306760
Alignment:
Q  197 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa--taaattcgagtgttaaaatc 294  Q
    |||||||||||||| ||||||||| ||||||||    |||||||||| | || |||| ||| ||||||||||||| |   | |||| |||||| ||||||    
T  12306866 aattgattctggctaaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtgagttgaatatagtgaatttgagtgtaaaaatc 12306767  T
Q  295 aattcta 301  Q
    |||||||    
T  12306766 aattcta 12306760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 41788422 - 41788353
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 303  Q
    ||||||||||  |||||||  | | |||||||||||||||  ||||| ||||||||||||||||| ||||    
T  41788422 atttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattataga 41788353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 204
Target Start/End: Complemental strand, 45823336 - 45823307
Alignment:
Q  175 tgacaaaaattgattttgattgaattgatt 204  Q
    ||||||||||||||||||||||||||||||    
T  45823336 tgacaaaaattgattttgattgaattgatt 45823307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 305
Target Start/End: Complemental strand, 40491721 - 40491613
Alignment:
Q  197 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 296  Q
    |||||||| || || ||||||||| |||| |||    |||||| ||| ||||||||| ||| |||||||||| |||  |||||| | |||| ||| ||||    
T  40491721 aattgattttgactaaaagtgagttgaaggtaaagtgatttatttttggatacattcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaa 40491622  T
Q  297 ttctagaat 305  Q
    |||||||||    
T  40491621 ttctagaat 40491613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 173 - 288
Target Start/End: Complemental strand, 33843878 - 33843763
Alignment:
Q  173 gttgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaac 272  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| | |  |||    |||||||||| |||| |||| ||| | ||||||||||||    
T  33843878 gttgacaaaaattgattttgattgaattgattctggctaaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaac 33843779  T
Q  273 aataaattcgagtgtt 288  Q
    ||||||||||||||||    
T  33843778 aataaattcgagtgtt 33843763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 55927749 - 55927820
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||| ||||||||| ||| ||||||| |||||||||||||| |||||| |  ||||||||||||||    
T  55927749 atttatgtttggatacattcatgtaaaagtgacttgaacaataaatttgagtgtgacgatcaattctagaat 55927820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 4243468 - 4243422
Alignment:
Q  259 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    ||||||||| |||||||||||| |||||| |||||||||||||||||    
T  4243468 aaagtgagtagaacaataaatttgagtgtaaaaatcaattctagaat 4243422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 33844052 - 33844012
Alignment:
Q  265 agttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  33844052 agttgaacaataaatttgagtgttaaaatcaattttagaat 33844012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 8604601 - 8604672
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||| ||||||||| ||| ||||||  || ||| ||||||| | |||| |||||||||||||||||    
T  8604601 atttatgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaat 8604672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 48045675 - 48045726
Alignment:
Q  178 caaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataa 229  Q
    |||||||||||||||| | |||||||||||||| ||| ||||| ||||||||    
T  48045675 caaaaattgattttgagtaaattgattctggctaaaactgagttgaagataa 48045726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 2207160 - 2207114
Alignment:
Q  259 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||||||| ||||||| ||||||| ||||||||| ||||||    
T  2207160 aaagtgagttgaaccataaattggagtgttgaaatcaattatagaat 2207114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 32818354 - 32818420
Alignment:
Q  239 tgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    ||||| ||||||||| ||| ||||| |||||||| ||||||| | |||  |||||||||||||||||    
T  32818354 tgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaat 32818420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 25319153 - 25319108
Alignment:
Q  235 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 280  Q
    ||||||||||||||||||   || ||||||||||||||||||||||    
T  25319153 tttatgtttcgatacatttacgtaaaagtgagttgaacaataaatt 25319108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 32100373 - 32100336
Alignment:
Q  259 aaagtgagttgaacaataaattcgagtgttaaaatcaa 296  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  32100373 aaagtgagttgaacaataaatttgagtgtaaaaatcaa 32100336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 10185289 - 10185229
Alignment:
Q  245 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    ||||||||  ||| |||||||||| ||||||||||| |||||| || ||||||| ||||||    
T  10185289 gatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaat 10185229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 16552050 - 16551993
Alignment:
Q  245 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 304  Q
    ||||||||| ||| |||||||||||||| |||||||   |||| ||||||||||||||||    
T  16552050 gatacattcatgtaaaagtgagttgaactataaatt--tgtgtgaaaatcaattctagaa 16551993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 305
Target Start/End: Original strand, 1976788 - 1976916
Alignment:
Q  179 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 278  Q
    |||||||| |||||| ||||||||||||||||  || ||||| |||| |||  | | |||||||| ||||||||| ||| |||||||||| |||||||||    
T  1976788 aaaaattgtttttgagtgaattgattctggctagaattgagttgaaggtaaagcgacttatgtttggatacattcatgtaaaagtgagttcaacaataaa 1976887  T
Q  279 ttcgagtgt--taaaatcaattctagaat 305  Q
    || ||||||   |||||||||||||||||    
T  1976888 tttgagtgtaaaaaaatcaattctagaat 1976916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 44439360 - 44439289
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||| ||||  ||  ||| |||||||||||||||||||||| ||||||||||||||||| ||||||    
T  44439360 atttatgtttggatatgtttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaat 44439289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 280
Target Start/End: Original strand, 15220840 - 15220886
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 280  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||    
T  15220840 atttatgtttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 16013683 - 16013760
Alignment:
Q  234 atttatgtttcgatacattcgtgt------taaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||| |||||||||||||      ||||||||||||| ||||||||| |||||| ||||||| |||||||||    
T  16013683 atttatgtttggatacattcgtgtaaactgtaaagtgagttgaccaataaatttgagtgtaaaaatcatttctagaat 16013760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 37420171 - 37420243
Alignment:
Q  233 aatttatgtttcgatacattcgt--gttaaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 303  Q
    |||||||||||| ||| || |||  || ||||||||||||| |||||||| |||||| |||||||||||||||    
T  37420171 aatttatgtttcaatatatacgtaagtaaaagtgagttgaataataaatttgagtgtaaaaatcaattctaga 37420243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 339
Target Start/End: Complemental strand, 42982639 - 42982546
Alignment:
Q  245 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatc 339  Q
    ||||||||| ||| ||||||||||| | |||||||| | |||| |||||||||||| ||||       || ||||||||||||||||||||||||    
T  42982639 gatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaat-caaaagctacaatttctagcttcaagtagaatc 42982546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 11650668 - 11650706
Alignment:
Q  166 gtttggcgttgacaaaaattgattttgattgaattgatt 204  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  11650668 gttttgcgttgacaaaaattgattttgagtgaattgatt 11650706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 42741058 - 42741012
Alignment:
Q  259 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    ||||||||||| ||| |||||| |||||| |||||||||||||||||    
T  42741058 aaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaat 42741012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 40401621 - 40401666
Alignment:
Q  233 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 278  Q
    ||||||||||| ||||||||| ||| ||||| ||||||||||||||    
T  40401621 aatttatgtttggatacattcatgtaaaagtcagttgaacaataaa 40401666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 3476349 - 3476393
Alignment:
Q  175 tgacaaaaattgattttgattgaattgattctggcttaaagtgag 219  Q
    ||||||||||||||||| | |||||||||||||| | ||||||||    
T  3476349 tgacaaaaattgattttaagtgaattgattctggataaaagtgag 3476393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 4908896 - 4908852
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 278  Q
    |||||||||| ||||||||| ||||||||||  ||||||||||||    
T  4908896 atttatgtttggatacattcatgttaaagtggattgaacaataaa 4908852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 14093 - 14164
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||| ||||||||| ||| ||||||||||||| |||||||| |||||| |||||||||||||||||    
T  14093 atttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaattctagaat 14164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 177 - 301
Target Start/End: Complemental strand, 36302348 - 36302222
Alignment:
Q  177 acaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataataca--atttatgtttcgatacattcgtgttaaagtgagttgaacaa 274  Q
    ||||||||||||||||| ||||||||||| || | ||| ||||| |||||||| | |  ||| |||| | ||| ||||| ||| ||||||||||||||||    
T  36302348 acaaaaattgattttgagtgaattgattccggttaaaattgagttgaagataaaaaatgattaatgtgtggattcattcatgtaaaagtgagttgaacaa 36302249  T
Q  275 taaattcgagtgttaaaatcaattcta 301  Q
    ||||||  |||| ||||||||||||||    
T  36302248 taaatttaagtgctaaaatcaattcta 36302222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 46853459 - 46853584
Alignment:
Q  180 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 279  Q
    ||||||||| |||| |||||||||| |||||  |||| ||| |||| |||    ||||||||   |||| |||  ||| |||||||||||||||||||||    
T  46853459 aaaattgatcttgagtgaattgattttggctacaagtaagttgaaggtaaagtgatttatgtcaggatatatttatgtaaaagtgagttgaacaataaat 46853558  T
Q  280 tcgagtgttaaaatcaattctagaat 305  Q
    | ||||||||||||||||||||||||    
T  46853559 ttgagtgttaaaatcaattctagaat 46853584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 30301002 - 30301079
Alignment:
Q  259 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtaga 336  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||       ||||||||||||||||||| ||||    
T  30301002 aaagtgggttgaacaataaatttgagtgttaaaaccaattctagaattaaaaaactccaatttctagcttcaaataga 30301079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 305
Target Start/End: Complemental strand, 51285744 - 51285605
Alignment:
Q  166 gtttggcgttgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtga 265  Q
    |||| ||| ||| ||||||||||||||| |||||| ||| ||||| ||||||||| |||  |||   |||| ||| || ||||||||| ||| |||| |     
T  51285744 gttttgcggtgagaaaaattgattttgagtgaatttattatggctaaaagtgagttgaatgtaaagtaattcatgcttggatacattcatgtaaaagcgg 51285645  T
Q  266 gttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    ||| ||||| ||||| |||||  |||||||||||||||||    
T  51285644 gttaaacaacaaatttgagtgcaaaaatcaattctagaat 51285605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 237 - 345
Target Start/End: Original strand, 40147832 - 40147939
Alignment:
Q  237 tatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtaga 336  Q
    ||||||| ||||||||  ||| |||||||||||||  |||||||| |||||| ||||||||||||||||       |||||| ||||||||| |||||||    
T  40147832 tatgtttggatacattaatgtaaaagtgagttgaatgataaattcaagtgttgaaatcaattctagaat-caaaagctccaaattctagcttgaagtaga 40147930  T
Q  337 atcgattct 345  Q
    ||| |||||    
T  40147931 atcaattct 40147939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 345
Target Start/End: Complemental strand, 35058443 - 35058357
Alignment:
Q  259 aaagtgagttgaacaataa-attcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 345  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||       ||| ||||||||||| ||||||||||| |||||    
T  35058443 aaagtgagttgaacaataatatttgagtgttaaaatcaattctagaat-caaaagctcgaatttctagctccaagtagaatcaattct 35058357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 305
Target Start/End: Original strand, 35264392 - 35264461
Alignment:
Q  236 ttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||| | ||||||| ||| ||| ||| ||||||||||||||  |||||||||||||||||||||||    
T  35264392 ttatgtttgggtacattcatgtaaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaat 35264461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 338
Target Start/End: Original strand, 27266773 - 27266876
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagt 333  Q
    |||||||||| ||||  ||| ||| ||||| |||||||||||||||| |||||| ||||| |||||| ||||       || ||||||||||||||||||    
T  27266773 atttatgtttagatattttcatgtaaaagttagttgaacaataaatttgagtgtaaaaattaattcttgaat-cattagctacaatttctagcttcaagt 27266871  T
Q  334 agaat 338  Q
    |||||    
T  27266872 agaat 27266876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 31708223 - 31708289
Alignment:
Q  239 tgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    ||||| ||||||||| ||| |||||||||||||  ||||||| | |||||| |||||||||||||||    
T  31708223 tgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaat 31708289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 5407061 - 5406964
Alignment:
Q  179 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 278  Q
    ||||||||||||||| |||||||||||| ||| ||| ||||| |||| ||    || |||||||| ||||||||| ||| ||||||| ||||| | ||||    
T  5407061 aaaaattgattttgagtgaattgattctagctaaaattgagttgaaggta----aagttatgtttggatacattcatgtaaaagtgatttgaagagtaaa 5406966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 37335025 - 37335084
Alignment:
Q  246 atacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||| | | ||| ||||||||||||| ||||| ||||| |||||||||||||||||    
T  37335025 atacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaat 37335084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 298
Target Start/End: Original strand, 40136096 - 40136214
Alignment:
Q  179 aaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaa 278  Q
    ||||||||||||||| |||||| |||||||| |||||||| | |||  ||| | | ||| |||||  |||||||  ||| ||| |||||| |||||| ||    
T  40136096 aaaaattgattttgaatgaattaattctggc-taaagtgacttgaatgtaaaatattttttgttttaatacatttttgtaaaaatgagttcaacaatgaa 40136194  T
Q  279 ttcgagtgttaaaatcaatt 298  Q
    || || ||||||||||||||    
T  40136195 tttgattgttaaaatcaatt 40136214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 305
Target Start/End: Complemental strand, 3776667 - 3776557
Alignment:
Q  195 tgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatc 294  Q
    |||||||||||||||| ||| ||||| |||  |||    ||||||| || ||||||||  ||| |||||||||| | ||| ||||| |||||| |||||     
T  3776667 tgaattgattctggctaaaattgagttgaatgtaaagtgatttatgcttggatacattgatgtaaaagtgagttcagcaacaaatttgagtgtaaaaatt 3776568  T
Q  295 aattctagaat 305  Q
    |||||||||||    
T  3776567 aattctagaat 3776557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 35253446 - 35253516
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 304  Q
    |||||| ||| || ||| || ||| |||||||||||||  ||||||| |||||| ||||||||||||||||    
T  35253446 atttatatttggaaacaatcatgtaaaagtgagttgaatgataaatttgagtgtaaaaatcaattctagaa 35253516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 29475364 - 29475425
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatca 295  Q
    |||||||||| ||||| ||  ||| ||| |||||||||||| ||||| ||||||||||||||    
T  29475364 atttatgttttgatacgtttatgtcaaactgagttgaacaaaaaatttgagtgttaaaatca 29475425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 48548993 - 48549095
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagt 333  Q
    |||||||||| ||||||||  ||| |||||||||||||||||||||  |||| | |||||||||||||||||       || ||||||||||||||||||    
T  48548993 atttatgttttgatacatttatgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaat-cagaagctacaatttctagcttcaagt 48549089  T
Q  334 agaatc 339  Q
    ||||||    
T  48549090 agaatc 48549095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 1233465 - 1233350
Alignment:
Q  180 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 279  Q
    |||||||||||| |||||||| ||| | | | ||  |||||  ||| ||| | ||||||||||| ||||||||| ||| |||||||||| ||||||||||    
T  1233465 aaaattgattttcattgaattaattttagttaaacatgagtttaaggtaaaataatttatgtttagatacattcatgtgaaagtgagttcaacaataaat 1233366  T
Q  280 tcgagtgttaaaatca 295  Q
    | |||||| |||||||    
T  1233365 ttgagtgtaaaaatca 1233350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 28287340 - 28287382
Alignment:
Q  259 aaagtgagttgaacaataaattcgagtgttaaaatcaattcta 301  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  28287340 aaagttagttgaacaataaatttgagtgttaaaatcaattcta 28287382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 213522 - 213587
Alignment:
Q  240 gtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||| ||| ||||| ||| |||||||||||||||| ||||| |||| | |||||||||||||||||    
T  213522 gtttggatgcattcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaat 213587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 1514450 - 1514385
Alignment:
Q  233 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaatt 298  Q
    ||||| ||||| ||||||||| ||| ||| |||||||||||||||||| | |||| ||||||||||    
T  1514450 aatttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaatt 1514385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 276
Target Start/End: Original strand, 6932104 - 6932205
Alignment:
Q  175 tgacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaa 274  Q
    |||||||| |||||||||| ||||||||||||| || ||||||||| |||  ||| |  || |  |||| ||| ||||||||| || |||||||||||||    
T  6932104 tgacaaaatttgattttgaatgaattgattctgactaaaagtgagttgaatgtaaaatgatcttcgtttggattcattcgtgtaaaggtgagttgaacaa 6932203  T
Q  275 ta 276  Q
    ||    
T  6932204 ta 6932205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 259 - 345
Target Start/End: Complemental strand, 8382047 - 8381962
Alignment:
Q  259 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaatnnnnnnnctccaatttctagcttcaagtagaatcgattct 345  Q
    |||||||||||||||||||| | || ||| ||||||||||||||||        || |||||||||||||||||||||||| |||||    
T  8382047 aaagtgagttgaacaataaacttgaatgtaaaaatcaattctagaa-ctagaggctacaatttctagcttcaagtagaatcaattct 8381962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 20026168 - 20026212
Alignment:
Q  259 aaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 303  Q
    ||||||| |||||||||||||| ||||||| ||||||||||||||    
T  20026168 aaagtgaattgaacaataaatttgagtgttcaaatcaattctaga 20026212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 24587993 - 24587949
Alignment:
Q  259 aaagtgagttgaacaataaattcgagtgttaaaatcaattctaga 303  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||    
T  24587993 aaagtgagttgaataataaatttgagtgttaaaatcaattataga 24587949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 52263625 - 52263689
Alignment:
Q  233 aatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaat 297  Q
    ||||||||||| ||||||||  ||| ||| |||||| ||||||||||| |||||| |||||||||    
T  52263625 aatttatgtttggatacattaatgtaaaactgagttaaacaataaatttgagtgtaaaaatcaat 52263689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 4458492 - 4458421
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||| ||| |||||||||  || ||||||| ||| ||||||||||| |||||||||  ||||||||||||    
T  4458492 atttatatttggatacattcaggtaaaagtgaattgtacaataaattcaagtgttaaatccaattctagaat 4458421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 34915172 - 34915101
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    ||||||||||  |||||||| ||| |||||||||||||  ||||| | | |||||| |||||||||||||||    
T  34915172 atttatgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaat 34915101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 7790646 - 7790692
Alignment:
Q  259 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||||||||||||||| | |||| |||||||||| ||||||    
T  7790646 aaagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaat 7790692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Original strand, 47892393 - 47892438
Alignment:
Q  260 aagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||||||||||  ||  |||||||||||||||||||||||    
T  47892393 aagtgagttgaacaatatgttttagtgttaaaatcaattctagaat 47892438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 3016265 - 3016197
Alignment:
Q  237 tatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    ||||||| ||||||||| ||| ||||||||||||||  ||||||   |||| || ||||||||||||||    
T  3016265 tatgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaat 3016197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 10324928 - 10324988
Alignment:
Q  245 gatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    ||||||||  ||| |||||||||  ||||||||||| |||||| |||||||||| ||||||    
T  10324928 gatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaat 10324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 17284171 - 17284131
Alignment:
Q  265 agttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||||||||| |||||| |||||||||| ||||||    
T  17284171 agttgaacaataaatttgagtgtaaaaatcaattttagaat 17284131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 30557608 - 30557539
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||| ||||| ||||||||| | | |||||||||||||| |||||||   |||| |||||||||||||||||    
T  30557608 atttgtgtttggatacattcatataaaagtgagttgaactataaatt--tgtgtgaaaatcaattctagaat 30557539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 30850393 - 30850445
Alignment:
Q  249 cattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 301  Q
    ||||| ||| |||||||||||||| ||||||| |  |||||||||||||||||    
T  30850393 cattcatgtaaaagtgagttgaactataaatttgtatgttaaaatcaattcta 30850445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 271
Target Start/End: Complemental strand, 35961501 - 35961437
Alignment:
Q  207 ggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaa 271  Q
    |||| ||||||||| |||| ||| |  ||||||||||| |||||||| ||| |||||||||||||    
T  35961501 ggctaaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaa 35961437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 52339719 - 52339775
Alignment:
Q  246 atacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctag 302  Q
    |||||||||||| || |||| |||||||||||||| |||| | ||| ||||||||||    
T  52339719 atacattcgtgtaaatgtgacttgaacaataaatttgagtataaaactcaattctag 52339775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 301
Target Start/End: Original strand, 16972005 - 16972110
Alignment:
Q  196 gaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatca 295  Q
    |||||||||| | || ||||||||| |||| ||| |  |||| |||||  |||||||| ||| ||||||| |||||||||||||| | || | |||||||    
T  16972005 gaattgattcagactaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatca 16972104  T
Q  296 attcta 301  Q
    ||||||    
T  16972105 attcta 16972110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 301
Target Start/End: Complemental strand, 32927998 - 32927931
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattcta 301  Q
    |||| ||||| ||||||||| ||| |||||||||||||| ||||||| | |||| ||||| |||||||    
T  32927998 atttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattcta 32927931  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 35495366 - 35495295
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||| |||||||||   | ||||||| |||||||||||||| |||| | |||||||||| ||||||    
T  35495366 atttatgtttggatacattcaaataaaagtgatttgaacaataaatttgagtataaaaatcaattatagaat 35495295  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 13384658 - 13384704
Alignment:
Q  259 aaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||||||| ||||||| | |||| |||||||||||||||||    
T  13384658 aaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaat 13384704  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 32767495 - 32767422
Alignment:
Q  234 atttatgtttcgatacattc--gtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    |||||||||| |||||||||  |||| ||||||||||||||||||||||  ||||| ||| ||| |||| ||||    
T  32767495 atttatgtttggatacattcatgtgtaaaagtgagttgaacaataaatttaagtgtaaaagtcagttctcgaat 32767422  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 38386476 - 38386430
Alignment:
Q  180 aaaattgattttgattgaattgattctggcttaaagtgagtcgaaga 226  Q
    ||||||||||||||| ||||||||||||||| ||||| ||| |||||    
T  38386476 aaaattgattttgatagaattgattctggctaaaagtaagttgaaga 38386430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 2778677 - 2778577
Alignment:
Q  176 gacaaaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaat 275  Q
    ||||||||||||||||   |||| ||||||| ||| ||||||||| ||||||||    |||||| ||| |||| |||  ||  |||||||||||||||||    
T  2778677 gacaaaaattgattttatgtgaactgattctagctaaaagtgagttgaagataaagtgatttatttttggataaatttatgcaaaagtgagttgaacaat 2778578  T
Q  276 a 276  Q
    |    
T  2778577 a 2778577  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 305
Target Start/End: Original strand, 26100088 - 26100196
Alignment:
Q  197 aattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaa 296  Q
    ||||||||||| || |||  |||| |||| |||  | |||| ||||| ||| ||||  ||| |||||||||||||| ||||||| | |||| ||||||||    
T  26100088 aattgattctgactaaaaacgagttgaaggtaaagctatttgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaa 26100187  T
Q  297 ttctagaat 305  Q
    || ||||||    
T  26100188 ttatagaat 26100196  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 43024991 - 43024963
Alignment:
Q  175 tgacaaaaattgattttgattgaattgat 203  Q
    |||||||||||||||||||||||||||||    
T  43024991 tgacaaaaattgattttgattgaattgat 43024963  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 15368632 - 15368508
Alignment:
Q  180 aaaattgattttgattgaattgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaat 279  Q
    |||||||||||||| |||||||||||||||| ||| ||||| ||||  ||    ||||||||||  |||||| | ||| ||||||| |||||||| | ||    
T  15368632 aaaattgattttgagtgaattgattctggctgaaattgagttgaagggaa-gtgatttatgtttgaatacatccatgtaaaagtgacttgaacaacatat 15368534  T
Q  280 tcgagtgttaaaatcaattctagaat 305  Q
    | |||||| || ||||||| ||||||    
T  15368533 ttgagtgtaaagatcaattatagaat 15368508  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 8591587 - 8591519
Alignment:
Q  234 atttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctag 302  Q
    |||||| ||| ||||||||| | | |||||||||||||||| ||||| |||||  ||||||||||||||    
T  8591587 atttatatttggatacattcctataaaagtgagttgaacaacaaatttgagtgaaaaaatcaattctag 8591519  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 35138967 - 35139054
Alignment:
Q  199 ttgattctggcttaaagtgagtcgaagataatacaatttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtg 286  Q
    ||||||||| || ||| ||||| |||| ||| |  |||||||||  ||||||||| | | |||||||||||||||||||||| |||||    
T  35138967 ttgattctgtctaaaattgagttgaaggtaaaatgatttatgttcagatacattcatatgaaagtgagttgaacaataaatttgagtg 35139054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 36640042 - 36639972
Alignment:
Q  235 tttatgtttcgatacattcgtgttaaagtgagttgaacaataaattcgagtgttaaaatcaattctagaat 305  Q
    ||||||||| ||||  ||| ||| |||||||| |||||| |||||| |||||| |||| ||||||||||||    
T  36640042 tttatgttttgataggttcatgtaaaagtgaggtgaacattaaatttgagtgtaaaaaacaattctagaat 36639972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Complemental strand, 7925468 - 7925431
Alignment:
Q  258 taaagtgagttgaacaataaattcgagtgttaaaatca 295  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  7925468 taaagtgagttgaacaataaatttgagtgtaaaaatca 7925431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 9952555 - 9952600
Alignment:
Q  175 tgacaaaaattgattttgattgaattgattctggcttaaagtgagt 220  Q
    ||||||||||||||||||| |||||||||| ||| | |||||||||    
T  9952555 tgacaaaaattgattttgaatgaattgattatggataaaagtgagt 9952600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 9185020 - 9185064
Alignment:
Q  260 aagtgagttgaacaataaattcgagtgttaaaatcaattctagaa 304  Q
    ||||||||||||| |||||||  | ||||||||||||||||||||    
T  9185020 aagtgagttgaacgataaatttaaatgttaaaatcaattctagaa 9185064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 37886019 - 37886063
Alignment:
Q  236 ttatgtttcgatacattcgtgttaaagtgagttgaacaataaatt 280  Q
    ||||||||  ||||||| |||| ||||||||||||||||||||||    
T  37886019 ttatgtttgaatacatttgtgtaaaagtgagttgaacaataaatt 37886063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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