View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_high_15 (Length: 382)
Name: NF5875_high_15
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 36896981 - 36896754
Alignment:
| Q |
19 |
agtactaccattgctgctggttctccttcttcttctggttcaaagaaaggaagaggtgggtcagttcaacattctcaaccacctaggtgtcaagttgaag |
118 |
Q |
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| T |
36896981 |
agtactaccattgctgctggttctccttcttcttctggttcaaagaaaggaagaggtgggtcagttcaacattctcaaccacctaggtgtcaagttgaag |
36896882 |
T |
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| Q |
119 |
gatgtaaactagatctgactgatgctaaagcttactattctagacacaaagtttgtagcatgcactctaaatcccctactgttactgtttctggtcttca |
218 |
Q |
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| T |
36896881 |
gatgtaaactagatctgactgatgctaaagcttactattctagacacaaagtttgtagcatgcactctaaatcccctactgttactgtttctggtcttca |
36896782 |
T |
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| Q |
219 |
acaaaggttttgtcaacaatgtagcagg |
246 |
Q |
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| T |
36896781 |
acaaaggttttgtcaacaatgtagcagg |
36896754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 333
Target Start/End: Complemental strand, 36896698 - 36896667
Alignment:
| Q |
302 |
gatgtaatttgtatggtaaggacattagggtc |
333 |
Q |
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| T |
36896698 |
gatgtaatttgtatggtaaggacattagggtc |
36896667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 97 - 246
Target Start/End: Complemental strand, 22682327 - 22682178
Alignment:
| Q |
97 |
ccacctaggtgtcaagttgaaggatgtaaactagatctgactgatgctaaagcttactattctagacacaaagtttgtagcatgcactctaaatccccta |
196 |
Q |
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| T |
22682327 |
ccacctaggtgtcaagttgaaggttgtaaagtagatctgagtggtgctaaggcttattattctagacataaagtttgttgcatgcattcaaaatctcctt |
22682228 |
T |
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| Q |
197 |
ctgttactgtttctggtcttcaacaaaggttttgtcaacaatgtagcagg |
246 |
Q |
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| T |
22682227 |
ctgttgttgtttctggtttggagcaaaggttttgccaacagtgtagcagg |
22682178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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