View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_high_17 (Length: 376)
Name: NF5875_high_17
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 32803852 - 32804126
Alignment:
| Q |
16 |
caagaatctatcgattccgtaaacaaagagaactccattgtcgtagatcggagatccaatgattttgatattgttaacagatgtcacgcgatcggaggaa |
115 |
Q |
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| T |
32803852 |
caagaatctatctattccgtaaacaaagagaactccattgtcgtagatcggagatccaatgattttgatattgttaacagatgtcacgcgatcggaggaa |
32803951 |
T |
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| Q |
116 |
gaggtagtgacggttagagactgaccggtgagcatcgttggaagcttagtgccagcgggaagacgccggaggctttgctgcgggagcggtaacatgacga |
215 |
Q |
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| T |
32803952 |
gaggtagtgacggttagcgactgaccggtgagcatcgttggaagcttagtgccagcgggaagacgccggaggctttgctgcgggagcggtaagatgacga |
32804051 |
T |
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| Q |
216 |
agtgaaagagaagaagatcgagtgatggtcgaccagatttcttgaacgctgaatcggagggagcgaagatggtgg |
290 |
Q |
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| T |
32804052 |
agtgaaagagaagaagatcgagtgatggttgaccagatttcttgaacgctgaatcggagggagcgaagatggtgg |
32804126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 49028670 - 49028940
Alignment:
| Q |
20 |
aatctatcgattccgtaaacaaagagaactccattgtcgtagatcggagatccaatgattttgatattgttaacagatgtcacgcgatcggaggaagagg |
119 |
Q |
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|||||||||||||||||||||| |||||||| | |||||||||||| | ||| |||| ||||||||||||||||| ||||||||||||||| | || | |
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| T |
49028670 |
aatctatcgattccgtaaacaagaagaactccgtcgtcgtagatcggcgttccgttgatcttgatattgttaacagaggtcacgcgatcggagaatgatg |
49028769 |
T |
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| Q |
120 |
tagtgacggttagagactgaccggtgagcatcgttggaagcttagtgccagcgggaagacgccggaggctttgctgcgggagcggtaacatgacgaagtg |
219 |
Q |
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| T |
49028770 |
tagtgacggttagcgactgaccggtaagcatcgtcggaagcttagcgccggcgggaagacggcgtaagctttgctgcggaagcggtaacatgacgaagtg |
49028869 |
T |
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| Q |
220 |
aaagagaagaagatcgagtgatggtcgaccagatttcttgaacgctgaatcggagggagcgaagatggtgg |
290 |
Q |
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| T |
49028870 |
gaaacgaagaagatcgagtgaaggttgaccggatttcttgaacgcggaatcggagggagcaaagacggtgg |
49028940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 267 - 359
Target Start/End: Original strand, 4326830 - 4326922
Alignment:
| Q |
267 |
aatcggagggagcgaagatggtggtgaaatgtggttggtagagaagagtttcagacaaatgttcggatgtgagggacacgatttagtctccat |
359 |
Q |
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| T |
4326830 |
aatcggagggagcgaagatggtggtgaaatgtggttggtagagaagagtttcagacaaatattcggatgtgagggacatgatttagtctccat |
4326922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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