View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_high_18 (Length: 374)
Name: NF5875_high_18
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 359
Target Start/End: Complemental strand, 39680671 - 39680325
Alignment:
| Q |
13 |
aatatggtaaatagatatagctaaagttagtaaatctaaagcattacaacaaatcaaagtcgtgacaggggatactaatactatagtatagttaattaac |
112 |
Q |
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| T |
39680671 |
aatatggtaaatagatatagctaaagttagtaaatctaaagcattacaacaaatcaaagtcgtgacaggggatactaatactatagtatagttaattaac |
39680572 |
T |
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| Q |
113 |
tgcattgaacattctatttagtcttgcgatggatattgatatctaaagtcccaaatagatttttcttcctcctgaccatgtagattatgctcttgatttt |
212 |
Q |
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| T |
39680571 |
tgcattgaacattctatttagtcttgcgatggatattgatatctaaagtcccaaatagatttttcttcctcctgaccatgtagattatgctcttgatttt |
39680472 |
T |
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| Q |
213 |
gagtaaaatccatgttgttattaccttttaccatttcgagtgccgcttcgaattcatgatcatccacatcgttcagccaatgttcaacatcccatccaaa |
312 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39680471 |
gagtaaaatccatgttgttattacctttcaccatttcgagtgccgcttcgaattcatgatcatccacatcattcagccaatgttcaacatcccatccaaa |
39680372 |
T |
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| Q |
313 |
tttcccaccttcaatctctcccattttcaaccaatcatcaacatttt |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39680371 |
tttcccaccttcaatctctcccattttcaaccaatcatcaacatttt |
39680325 |
T |
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