View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_high_20 (Length: 358)
Name: NF5875_high_20
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 33213927 - 33214125
Alignment:
| Q |
19 |
gaagggttcttgatgccctctgatgtgggtatttattcttagaaaaacccttattcttaattaaactatgttatgcataactcatgagcaagtattgtga |
118 |
Q |
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| T |
33213927 |
gaagggttcttgatgccctctgatgtgggtatttattcttagaaaaacccttattcttaattaaactatgttatgcataactcatgagcaagtcttgtga |
33214026 |
T |
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| Q |
119 |
tcaacgatgtattagtaggatttcgaatagtttcgtacttgacctcgatagtgggtacttttttatatatggtgtaatcactaactatatatttagcta |
217 |
Q |
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| T |
33214027 |
tcaacgatgtattagtaggatttcgaatagtttcgtacttgacctcgatagtggatacttttttatatatggtgtaatcactaactatatatttagcta |
33214125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 33214167 - 33214204
Alignment:
| Q |
210 |
tttagctatcaatgaatgaaatatctatttatttgacc |
247 |
Q |
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| T |
33214167 |
tttagctatcaatgaatgaaatacctatttatttgacc |
33214204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 42319351 - 42319261
Alignment:
| Q |
153 |
gtacttgacctcgatagtgggtacttttttatatatggtgtaatcactaactatatatttagctatcaatgaatgaaatatctatttatttgacc |
247 |
Q |
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|||||||||| | |||||| | |||||| |||| | |||||||||||| |||| |||||||||||||||||||||||||| || ||||||| |
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| T |
42319351 |
gtacttgaccccaatagtgagcacttttctatacacagtgtaatcactagctat----ttagctatcaatgaatgaaatatctacttgtttgacc |
42319261 |
T |
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