View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_high_23 (Length: 338)
Name: NF5875_high_23
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_high_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 338
Target Start/End: Original strand, 51738712 - 51739035
Alignment:
| Q |
12 |
tatacttatttttatgttatcttttgtgtacttnnnnnnngtactagcaatttccacaatttgtaagggacttggtgcatgcactggtcggtggtcgcaa |
111 |
Q |
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| T |
51738712 |
tatacttatttttatgttatcttttgtgtacttaaaaaaagtactagcaatttccacaatttgtaagggacttggtgcatgcactggtcggtggtcgcaa |
51738811 |
T |
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| Q |
112 |
gcaattagtttttaattttctattattannnnnnnnaagaaatgattttctagttaattattaaaatttagcaactcatataatattttaatcaaacata |
211 |
Q |
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| T |
51738812 |
gcaattagtttttaattttctattttt---ttttttaagaaatgattttctagttaattattaaaatttagcaactcatataatattttaatcaaacata |
51738908 |
T |
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| Q |
212 |
acaattggttgttagctttagctagagtaaaggaggaaatagtagacatgacaaaatgattggtcgttacttacaagtctttcaccaataatttaggatc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51738909 |
acaattggttgttagctttagctagagtaaaggaggaaatagtagacatgacaaaatgattggtcgttacttacaagtctttcagcaataatttaggatc |
51739008 |
T |
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| Q |
312 |
tgaaacacagactcaaatacctcaaat |
338 |
Q |
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||||||||||||||||||||||||||| |
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| T |
51739009 |
tgaaacacagactcaaatacctcaaat |
51739035 |
T |
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