View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5875_high_26 (Length: 287)
Name: NF5875_high_26
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 5391448 - 5391702
Alignment:
| Q |
19 |
cctccgtgaaaggggactcatggggcttgatcttaccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagatt |
118 |
Q |
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| T |
5391448 |
cctccgtgaaaggggactcatggggcttgatcttaccgactatttcaaaggatccaaagtagtgcttgattcccgtttgaagggacacatgacaaagatt |
5391547 |
T |
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| Q |
119 |
cagagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaacttcgcagttttgagcctctgtgggcatgctggtccacgagacatag |
218 |
Q |
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| T |
5391548 |
cagagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaactttgcagttttgagcctctgtgggcatgctggtccacgagacatag |
5391647 |
T |
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| Q |
219 |
aaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgat |
273 |
Q |
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| T |
5391648 |
aaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgat |
5391702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 5395259 - 5395511
Alignment:
| Q |
19 |
cctccgtgaaaggggactcatggggcttgatcttaccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagatt |
118 |
Q |
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|||||||||| ||||||||||||| |||||||||||||| |||| |||||||| | ||||||||| |||| || |||||||| ||||| |||||||| |
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| T |
5395259 |
cctccgtgaagggggactcatgggccttgatcttaccgatcgtttcgaaggatcctaggtagtgcttagttcctgtttgaagggacacatggcaaagatt |
5395358 |
T |
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| Q |
119 |
cagagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaacttcgcagttttgagcctctgtgggcatgctggtccacgagacatag |
218 |
Q |
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| T |
5395359 |
gagagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaacttcgcagttttgagcctctgtaggcatgctggtccacgagacatag |
5395458 |
T |
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| Q |
219 |
aaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttg |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5395459 |
aaaatatgtgtcacatcagttaagggagagagcttcaattcgacgtctttttg |
5395511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 5401406 - 5401660
Alignment:
| Q |
19 |
cctccgtgaaaggggactcatggggcttgatcttaccgactatttcaaaggatccaaagtagtgcttgattcccgtctgaagggatacatgacaaagatt |
118 |
Q |
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|||| ||||| ||||||||||| || ||||||||||||| ||||| |||| ||| | ||||||||| || |||||||| || ||||| ||||||| |
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| T |
5401406 |
cctctgtgaagggggactcatgaggtttgatcttaccgatgatttcgaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatt |
5401505 |
T |
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| Q |
119 |
cagagtatttgggatgagggctcgaaggacgttccttaacattgaaccgttaacttcgcagttttgagcctctgtgggcatgctggtccacgagacatag |
218 |
Q |
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||| ||||||||| |||||| ||||||||||||| ||||| | ||| || || || || ||||||||||| ||||| |||||||||||||||||||| |
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| T |
5401506 |
tggagcatttgggattagggcttgaaggacgttcctcaacatggcaccattcacctcacaattttgagcctccgtgggtctgctggtccacgagacatag |
5401605 |
T |
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| Q |
219 |
aaaatatgtgtcacatcagttaagggagagagcttcaattcaacgtctttttgat |
273 |
Q |
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|| ||||| ||||| || ||||| || || |||||||||||||| || ||||||| |
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| T |
5401606 |
aatatatgggtcacgtctgttaaaggggatagcttcaattcaacatcgttttgat |
5401660 |
T |
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