View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5875_high_29 (Length: 258)
Name: NF5875_high_29
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5875_high_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 46565491 - 46565725
Alignment:
| Q |
1 |
catcttgggtggagtctatattcgaaaattaattagtttgccataaatataatagactggtcccatcaa-ctattctagtatatattttttcttgacaca |
99 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46565491 |
catcttaggtggagtctatattcgaaaattaattagtttgccataa------tagactggtcccatcaaactattctagtatatattttttcttgacaca |
46565584 |
T |
|
| Q |
100 |
aaatatactagtatcttgtatagagttagtgggataaaacatgaataatttactaactagtgacaatgtcattttctattaattagtggctagctagtgg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46565585 |
aaatatactagtatcttgtatagagttagtgggataaaacatgaataatttactaactagtgacagtgtcattttctattaattagtggctagctagtgg |
46565684 |
T |
|
| Q |
200 |
gaaattaatcaaaataacaatgatgatgatgatgcataata |
240 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46565685 |
gaaattaaacaaaataacaatgatgatgatgatgcataata |
46565725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University