View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5875_high_31 (Length: 250)

Name: NF5875_high_31
Description: NF5875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5875_high_31
NF5875_high_31
[»] chr5 (7 HSPs)
chr5 (1-233)||(11504385-11504617)
chr5 (1-233)||(11511779-11512011)
chr5 (1-233)||(11519155-11519387)
chr5 (1-233)||(11526560-11526792)
chr5 (1-233)||(11533970-11534202)
chr5 (1-233)||(11497058-11497290)
chr5 (1-233)||(11541387-11541619)
[»] scaffold1005 (1 HSPs)
scaffold1005 (1-233)||(2530-2762)
[»] chr1 (5 HSPs)
chr1 (1-147)||(44180824-44180980)
chr1 (2-233)||(41556321-41556565)
chr1 (2-149)||(44208046-44208206)
chr1 (155-233)||(44179884-44179962)
chr1 (155-233)||(44207015-44207093)
[»] chr4 (1 HSPs)
chr4 (154-233)||(4860380-4860459)
[»] chr2 (1 HSPs)
chr2 (86-136)||(45048279-45048329)
[»] chr6 (2 HSPs)
chr6 (172-233)||(14927212-14927273)
chr6 (86-147)||(14929190-14929251)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 11504617 - 11504385
Alignment:
Q  1 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11504617 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 11504518  T
Q  101 tgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgat 200  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11504517 tgaccacgaacacaaaggccccagtagtgcctcaaaccccggtgattacggattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgat 11504418  T
Q  201 tggatacaacttgagagaatttgccatccttgt 233  Q
    |||||||||||||||||||||||||||||||||    
T  11504417 tggatacaacttgagagaatttgccatccttgt 11504385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 11512011 - 11511779
Alignment:
Q  1 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11512011 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 11511912  T
Q  101 tgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgat 200  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11511911 tgaccacgaacacaaaggccccagtagtgcctcaaaccccggtgattacggattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgat 11511812  T
Q  201 tggatacaacttgagagaatttgccatccttgt 233  Q
    |||||||||||||||||||||||||||||||||    
T  11511811 tggatacaacttgagagaatttgccatccttgt 11511779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 11519387 - 11519155
Alignment:
Q  1 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11519387 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 11519288  T
Q  101 tgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgat 200  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11519287 tgaccacgaacacaaaggccccagtagtgcctcaaaccccggtgattacggattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgat 11519188  T
Q  201 tggatacaacttgagagaatttgccatccttgt 233  Q
    |||||||||||||||||||||||||||||||||    
T  11519187 tggatacaacttgagagaatttgccatccttgt 11519155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 11526792 - 11526560
Alignment:
Q  1 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11526792 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 11526693  T
Q  101 tgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgat 200  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11526692 tgaccacgaacacaaaggccccagtagtgcctcaaaccccggtgattacggattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgat 11526593  T
Q  201 tggatacaacttgagagaatttgccatccttgt 233  Q
    |||||||||||||||||||||||||||||||||    
T  11526592 tggatacaacttgagagaatttgccatccttgt 11526560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 11534202 - 11533970
Alignment:
Q  1 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11534202 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 11534103  T
Q  101 tgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgat 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11534102 tgaccacgaacacgaaggccccagtagtgcctcaaaccccggtgattacggattttcttgagtctctcaagatcatccctgagcttcctgtcaagttgat 11534003  T
Q  201 tggatacaacttgagagaatttgccatccttgt 233  Q
    |||||||||||||||||||||||||||||||||    
T  11534002 tggatacaacttgagagaatttgccatccttgt 11533970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 11497290 - 11497058
Alignment:
Q  1 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11497290 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctatagtcgtggtatgc 11497191  T
Q  101 tgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgat 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||    
T  11497190 tgaccacgaacacgaaggccccagtagtgcctcaaaccccggtgattacggattttcttgagtctctcaggatcatccctcagcttcatgtcaagttgat 11497091  T
Q  201 tggatacaacttgagagaatttgccatccttgt 233  Q
    ||||||||| |||||||||||||||||||||||    
T  11497090 tggatacaagttgagagaatttgccatccttgt 11497058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 11541619 - 11541387
Alignment:
Q  1 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11541619 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 11541520  T
Q  101 tgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgat 200  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  11541519 tgaccacgaacacgaaggccccagttgtgcctcaaaccccgatgattacggattttcttgagtctctcaagatcatccctgaatttcatgtcaagttgat 11541420  T
Q  201 tggatacaacttgagagaatttgccatccttgt 233  Q
    |||||||||||||||| ||||||||||||||||    
T  11541419 tggatacaacttgagaaaatttgccatccttgt 11541387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1005 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 2762 - 2530
Alignment:
Q  1 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2762 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtcagcctgtagtcgtggtatgc 2663  T
Q  101 tgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttcatgtcaagttgat 200  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  2662 tgaccacgaacacaaaggccccagtagtgcctcaaaccccggtgattacggattttcttgagtctctcaagatcatccctgaatttcatgtcaagttgat 2563  T
Q  201 tggatacaacttgagagaatttgccatccttgt 233  Q
    |||||||||||||||||||||||||||||||||    
T  2562 tggatacaacttgagagaatttgccatccttgt 2530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 44180980 - 44180824
Alignment:
Q  1 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagt----------cagcctgtagt 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||          | |||||||||    
T  44180980 tgcttaaaatatgcctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacggtctttcccctgcggcctgtagt 44180881  T
Q  91 cgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgatt 147  Q
    | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44180880 cttggtatgctgaccacgaacacgaaggccccagtagtgcctcaaaccccggtgatt 44180824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 41556565 - 41556321
Alignment:
Q  2 gcttaaaatatgc---ctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtca----------gcctgta 88  Q
    |||||||||||||   ||||||||||||||||||||||  ||  |||| || ||||||||||||||||| |||||||| |||           ||| |||    
T  41556565 gcttaaaatatgcttcctcaaaatcatctaatctccaagtcaaaacataacagcttaacgcttctttgacacaccaactgtctttcctctgcggccagta 41556466  T
Q  89 gtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattacgaattttcttgagtctctcaagatcatccctgagcttca 188  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||||| || || |||||||| || |||| ||||||||| | ||||||||| |||||||    
T  41556465 gtcttggtatgctgaccacgaacacgaaggccccagtagtgcctcaatccacgatgattacggatcttctcgagtctctccaaatcatccctcagcttca 41556366  T
Q  189 tgtcaagttgattggatacaacttgagagaatttgccatccttgt 233  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||    
T  41556365 tgtcaaattgattggatacaacttgagagaatttcccatccttgt 41556321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 149
Target Start/End: Complemental strand, 44208206 - 44208046
Alignment:
Q  2 gcttaaaatatgc---ctcaaaatcatctaatctccaaaacaggacatcacggcttaacgcttctttgagacaccaacagtca----------gcctgta 88  Q
    |||||||||||||   ||||||||||||||||||||||  ||  |||| || ||||||||||||||||| |||||||| |||           ||| |||    
T  44208206 gcttaaaatatgcttcctcaaaatcatctaatctccaagtcaaaacataacagcttaacgcttctttgacacaccaactgtctttcctctgcggccagta 44208107  T
Q  89 gtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgattac 149  Q
    ||| ||||||||||||||||||||||||||| |||||||||||||||||| || |||||||    
T  44208106 gtcttggtatgctgaccacgaacacgaaggccccagtagtgcctcaaaccacgatgattac 44208046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 44179962 - 44179884
Alignment:
Q  155 ttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgt 233  Q
    |||||||||||||| | |||||| || | ||||||||| ||||||||||| ||||| ||||||||||| ||||||||||    
T  44179962 ttcttgagtctctccaaatcatctctcaacttcatgtcgagttgattggagacaacctgagagaatttcccatccttgt 44179884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 44207093 - 44207015
Alignment:
Q  155 ttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgt 233  Q
    |||||||||||||| | |||||| || | ||||||||| ||||||||||| ||||| ||||||||||| ||||||||||    
T  44207093 ttcttgagtctctccaaatcatctctcaacttcatgtcgagttgattggagacaacctgagagaatttcccatccttgt 44207015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 4860380 - 4860459
Alignment:
Q  154 tttcttgagtctctcaagatcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgt 233  Q
    ||||||||||||||| | || ||| || | ||||||||||||||| ||||| ||||||||||| ||||| ||||||||||    
T  4860380 tttcttgagtctctccaaattatctctcaacttcatgtcaagttggttggagacaacttgagaaaattttccatccttgt 4860459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 45048279 - 45048329
Alignment:
Q  86 gtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaa 136  Q
    |||||| ||||||||||||||||| |||||||||  |||||||||||||||    
T  45048279 gtagtcttggtatgctgaccacgagcacgaaggccacagtagtgcctcaaa 45048329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 14927273 - 14927212
Alignment:
Q  172 atcatccctgagcttcatgtcaagttgattggatacaacttgagagaatttgccatccttgt 233  Q
    ||||||||| | ||||||||| |||||||| || ||||||||||| || |||||||||||||    
T  14927273 atcatccctcaacttcatgtccagttgatttgaaacaacttgagaaaacttgccatccttgt 14927212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 14929251 - 14929190
Alignment:
Q  86 gtagtcgtggtatgctgaccacgaacacgaaggcgccagtagtgcctcaaaccccggtgatt 147  Q
    |||||| |||||||||| |||||||||||||| | |||||| || |||||||| ||||||||    
T  14929251 gtagtcttggtatgctgtccacgaacacgaagaccccagtaatgtctcaaacctcggtgatt 14929190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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